Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cobW and Synpcc7942_0828 are separated by 69 nucleotides Synpcc7942_0828 and Synpcc7942_0829 are separated by 264 nucleotides Synpcc7942_0829 and asnC are separated by 103 nucleotides
Synpcc7942_0827: cobW - cobalamin synthesis protein cobW-like, at 821,757 to 822,803
cobW
Synpcc7942_0828: Synpcc7942_0828 - hypothetical protein, at 822,873 to 823,241
_0828
Synpcc7942_0829: Synpcc7942_0829 - Lipoproteins-like, at 823,506 to 823,838
_0829
Synpcc7942_0830: asnC - asparaginyl-tRNA synthetase, at 823,942 to 825,330
asnC
Position (kb) 823
824 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 822.824 kb on - strand at 822.834 kb on - strand at 822.879 kb on - strand at 822.879 kb on - strand at 822.884 kb on + strand at 822.885 kb on + strand at 822.885 kb on + strand at 822.892 kb on - strand at 822.916 kb on - strand, within Synpcc7942_0828 at 822.921 kb on - strand, within Synpcc7942_0828 at 822.950 kb on - strand, within Synpcc7942_0828 at 822.961 kb on + strand, within Synpcc7942_0828 at 822.968 kb on - strand, within Synpcc7942_0828 at 822.997 kb on + strand, within Synpcc7942_0828 at 823.005 kb on - strand, within Synpcc7942_0828 at 823.059 kb on + strand, within Synpcc7942_0828 at 823.115 kb on - strand, within Synpcc7942_0828 at 823.121 kb on + strand, within Synpcc7942_0828 at 823.129 kb on - strand, within Synpcc7942_0828 at 823.129 kb on - strand, within Synpcc7942_0828 at 823.230 kb on + strand at 823.231 kb on - strand at 823.267 kb on + strand at 823.280 kb on + strand at 823.288 kb on - strand at 823.342 kb on + strand at 823.347 kb on + strand at 823.347 kb on + strand at 823.351 kb on + strand at 823.355 kb on - strand at 823.383 kb on + strand at 823.447 kb on - strand at 823.481 kb on - strand at 823.481 kb on - strand at 823.563 kb on + strand, within Synpcc7942_0829 at 823.563 kb on + strand, within Synpcc7942_0829 at 823.585 kb on - strand at 823.590 kb on - strand, within Synpcc7942_0829 at 823.650 kb on + strand, within Synpcc7942_0829 at 823.658 kb on - strand, within Synpcc7942_0829 at 823.725 kb on - strand, within Synpcc7942_0829 at 823.758 kb on + strand, within Synpcc7942_0829 at 823.766 kb on - strand, within Synpcc7942_0829 at 823.767 kb on - strand, within Synpcc7942_0829 at 823.791 kb on + strand, within Synpcc7942_0829 at 823.804 kb on - strand, within Synpcc7942_0829 at 823.808 kb on - strand at 823.815 kb on + strand at 823.823 kb on - strand at 823.823 kb on - strand at 823.828 kb on + strand at 823.837 kb on + strand at 823.850 kb on + strand at 823.854 kb on + strand at 823.883 kb on + strand at 823.885 kb on + strand at 823.885 kb on + strand at 823.885 kb on + strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.922 kb on + strand at 823.956 kb on + strand at 823.967 kb on + strand at 823.972 kb on + strand at 823.976 kb on - strand at 823.987 kb on + strand at 823.995 kb on - strand at 824.010 kb on - strand at 824.013 kb on + strand at 824.013 kb on + strand at 824.021 kb on - strand at 824.029 kb on - strand at 824.029 kb on - strand at 824.032 kb on + strand at 824.038 kb on + strand at 824.038 kb on + strand at 824.038 kb on + strand at 824.099 kb on + strand, within asnC at 824.106 kb on - strand, within asnC at 824.136 kb on + strand, within asnC at 824.139 kb on + strand, within asnC at 824.147 kb on - strand, within asnC at 824.147 kb on - strand, within asnC at 824.152 kb on - strand, within asnC at 824.161 kb on + strand, within asnC at 824.161 kb on + strand, within asnC at 824.180 kb on - strand, within asnC at 824.181 kb on - strand, within asnC at 824.187 kb on + strand, within asnC at 824.194 kb on + strand, within asnC at 824.195 kb on - strand at 824.195 kb on - strand, within asnC at 824.201 kb on - strand, within asnC at 824.207 kb on - strand, within asnC at 824.216 kb on - strand, within asnC at 824.242 kb on + strand, within asnC at 824.249 kb on - strand, within asnC at 824.310 kb on + strand, within asnC at 824.330 kb on - strand, within asnC at 824.330 kb on - strand, within asnC at 824.384 kb on + strand, within asnC at 824.384 kb on + strand, within asnC at 824.392 kb on - strand, within asnC at 824.460 kb on + strand, within asnC at 824.468 kb on - strand, within asnC at 824.469 kb on + strand, within asnC at 824.489 kb on + strand, within asnC at 824.489 kb on + strand, within asnC at 824.492 kb on - strand, within asnC at 824.497 kb on - strand, within asnC at 824.497 kb on - strand, within asnC at 824.497 kb on - strand, within asnC at 824.497 kb on - strand, within asnC at 824.549 kb on + strand, within asnC at 824.568 kb on + strand, within asnC at 824.576 kb on - strand, within asnC at 824.580 kb on + strand, within asnC at 824.588 kb on - strand, within asnC at 824.604 kb on + strand, within asnC at 824.604 kb on + strand, within asnC at 824.605 kb on + strand, within asnC at 824.612 kb on + strand, within asnC at 824.612 kb on - strand, within asnC at 824.612 kb on - strand, within asnC at 824.612 kb on - strand, within asnC at 824.613 kb on - strand, within asnC at 824.613 kb on - strand at 824.620 kb on - strand, within asnC at 824.620 kb on - strand, within asnC at 824.640 kb on + strand, within asnC at 824.648 kb on - strand, within asnC at 824.648 kb on - strand, within asnC at 824.667 kb on + strand, within asnC at 824.668 kb on - strand, within asnC at 824.675 kb on - strand, within asnC at 824.713 kb on + strand, within asnC at 824.721 kb on - strand, within asnC at 824.721 kb on - strand, within asnC at 824.756 kb on - strand, within asnC at 824.779 kb on + strand, within asnC at 824.788 kb on - strand, within asnC at 824.815 kb on + strand, within asnC at 824.815 kb on + strand, within asnC at 824.823 kb on - strand, within asnC at 824.836 kb on + strand, within asnC
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 822,824 - +0.3 822,834 - -0.3 822,879 - +1.0 822,879 - +0.7 822,884 + -0.9 822,885 + -2.5 822,885 + +0.9 822,892 - +0.6 822,916 - Synpcc7942_0828 0.12 +0.9 822,921 - Synpcc7942_0828 0.13 -1.7 822,950 - Synpcc7942_0828 0.21 -1.6 822,961 + Synpcc7942_0828 0.24 +0.9 822,968 - Synpcc7942_0828 0.26 +0.9 822,997 + Synpcc7942_0828 0.34 +0.4 823,005 - Synpcc7942_0828 0.36 -0.5 823,059 + Synpcc7942_0828 0.50 -0.5 823,115 - Synpcc7942_0828 0.66 -3.1 823,121 + Synpcc7942_0828 0.67 +0.2 823,129 - Synpcc7942_0828 0.69 -1.0 823,129 - Synpcc7942_0828 0.69 +0.1 823,230 + -1.4 823,231 - -0.3 823,267 + +1.9 823,280 + -2.4 823,288 - +0.0 823,342 + -1.7 823,347 + -0.2 823,347 + +0.2 823,351 + -2.7 823,355 - +0.5 823,383 + -0.3 823,447 - -1.4 823,481 - +0.0 823,481 - +0.8 823,563 + Synpcc7942_0829 0.17 +1.3 823,563 + Synpcc7942_0829 0.17 -1.0 823,585 - -1.1 823,590 - Synpcc7942_0829 0.25 -0.4 823,650 + Synpcc7942_0829 0.43 +0.1 823,658 - Synpcc7942_0829 0.46 +0.6 823,725 - Synpcc7942_0829 0.66 +0.6 823,758 + Synpcc7942_0829 0.76 +0.8 823,766 - Synpcc7942_0829 0.78 +0.3 823,767 - Synpcc7942_0829 0.78 -0.9 823,791 + Synpcc7942_0829 0.86 -0.4 823,804 - Synpcc7942_0829 0.89 +1.5 823,808 - +2.5 823,815 + +2.5 823,823 - +0.1 823,823 - -0.5 823,828 + +1.5 823,837 + +1.2 823,850 + +0.1 823,854 + +0.9 823,883 + +0.1 823,885 + -3.3 823,885 + +0.0 823,885 + -3.1 823,893 - -2.6 823,893 - +2.1 823,893 - +0.6 823,893 - +0.5 823,893 - +0.8 823,893 - +0.7 823,922 + -0.5 823,956 + +0.9 823,967 + -1.0 823,972 + +1.0 823,976 - -1.0 823,987 + -1.1 823,995 - +0.2 824,010 - +0.2 824,013 + +1.9 824,013 + -0.1 824,021 - -0.1 824,029 - -1.1 824,029 - -0.2 824,032 + +1.5 824,038 + -0.1 824,038 + -2.3 824,038 + +1.3 824,099 + asnC Synpcc7942_0830 0.11 +0.3 824,106 - asnC Synpcc7942_0830 0.12 -2.4 824,136 + asnC Synpcc7942_0830 0.14 -0.2 824,139 + asnC Synpcc7942_0830 0.14 -1.4 824,147 - asnC Synpcc7942_0830 0.15 -0.7 824,147 - asnC Synpcc7942_0830 0.15 +1.4 824,152 - asnC Synpcc7942_0830 0.15 +0.5 824,161 + asnC Synpcc7942_0830 0.16 -0.5 824,161 + asnC Synpcc7942_0830 0.16 -2.9 824,180 - asnC Synpcc7942_0830 0.17 -2.1 824,181 - asnC Synpcc7942_0830 0.17 -0.3 824,187 + asnC Synpcc7942_0830 0.18 +1.6 824,194 + asnC Synpcc7942_0830 0.18 -0.7 824,195 - -0.7 824,195 - asnC Synpcc7942_0830 0.18 -0.5 824,201 - asnC Synpcc7942_0830 0.19 +0.1 824,207 - asnC Synpcc7942_0830 0.19 +0.5 824,216 - asnC Synpcc7942_0830 0.20 +0.5 824,242 + asnC Synpcc7942_0830 0.22 -0.7 824,249 - asnC Synpcc7942_0830 0.22 +0.3 824,310 + asnC Synpcc7942_0830 0.26 +0.1 824,330 - asnC Synpcc7942_0830 0.28 -2.9 824,330 - asnC Synpcc7942_0830 0.28 -0.0 824,384 + asnC Synpcc7942_0830 0.32 -0.5 824,384 + asnC Synpcc7942_0830 0.32 -1.7 824,392 - asnC Synpcc7942_0830 0.32 -1.5 824,460 + asnC Synpcc7942_0830 0.37 +1.7 824,468 - asnC Synpcc7942_0830 0.38 +0.6 824,469 + asnC Synpcc7942_0830 0.38 -0.7 824,489 + asnC Synpcc7942_0830 0.39 -0.1 824,489 + asnC Synpcc7942_0830 0.39 -1.2 824,492 - asnC Synpcc7942_0830 0.40 -2.5 824,497 - asnC Synpcc7942_0830 0.40 -2.5 824,497 - asnC Synpcc7942_0830 0.40 -1.1 824,497 - asnC Synpcc7942_0830 0.40 -1.7 824,497 - asnC Synpcc7942_0830 0.40 +1.5 824,549 + asnC Synpcc7942_0830 0.44 -0.0 824,568 + asnC Synpcc7942_0830 0.45 -0.5 824,576 - asnC Synpcc7942_0830 0.46 -0.7 824,580 + asnC Synpcc7942_0830 0.46 +0.5 824,588 - asnC Synpcc7942_0830 0.47 -0.5 824,604 + asnC Synpcc7942_0830 0.48 -0.1 824,604 + asnC Synpcc7942_0830 0.48 +0.5 824,605 + asnC Synpcc7942_0830 0.48 -0.1 824,612 + asnC Synpcc7942_0830 0.48 -1.5 824,612 - asnC Synpcc7942_0830 0.48 -0.0 824,612 - asnC Synpcc7942_0830 0.48 +0.9 824,612 - asnC Synpcc7942_0830 0.48 +1.3 824,613 - asnC Synpcc7942_0830 0.48 -0.1 824,613 - -1.1 824,620 - asnC Synpcc7942_0830 0.49 -0.5 824,620 - asnC Synpcc7942_0830 0.49 +0.3 824,640 + asnC Synpcc7942_0830 0.50 +0.0 824,648 - asnC Synpcc7942_0830 0.51 -1.7 824,648 - asnC Synpcc7942_0830 0.51 -1.1 824,667 + asnC Synpcc7942_0830 0.52 -2.3 824,668 - asnC Synpcc7942_0830 0.52 -1.1 824,675 - asnC Synpcc7942_0830 0.53 -0.7 824,713 + asnC Synpcc7942_0830 0.56 +0.6 824,721 - asnC Synpcc7942_0830 0.56 -0.2 824,721 - asnC Synpcc7942_0830 0.56 -0.1 824,756 - asnC Synpcc7942_0830 0.59 -0.6 824,779 + asnC Synpcc7942_0830 0.60 -0.2 824,788 - asnC Synpcc7942_0830 0.61 -0.1 824,815 + asnC Synpcc7942_0830 0.63 +0.7 824,815 + asnC Synpcc7942_0830 0.63 +1.2 824,823 - asnC Synpcc7942_0830 0.63 +0.0 824,836 + asnC Synpcc7942_0830 0.64 -1.7
Or see this region's nucleotide sequence