Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0766 and Synpcc7942_0767 are separated by 375 nucleotides Synpcc7942_0767 and Synpcc7942_0768 are separated by 674 nucleotides
Synpcc7942_0766: Synpcc7942_0766 - DNA-damage-inducible protein, at 758,390 to 759,037
_0766
Synpcc7942_0767: Synpcc7942_0767 - hypothetical protein, at 759,413 to 759,847
_0767
Synpcc7942_0768: Synpcc7942_0768 - hypothetical protein, at 760,522 to 761,178
_0768
Position (kb) 759
760 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 758.420 kb on + strand at 758.420 kb on + strand at 758.437 kb on + strand at 758.437 kb on - strand at 758.520 kb on + strand, within Synpcc7942_0766 at 758.520 kb on + strand, within Synpcc7942_0766 at 758.525 kb on + strand, within Synpcc7942_0766 at 758.525 kb on + strand, within Synpcc7942_0766 at 758.528 kb on - strand, within Synpcc7942_0766 at 758.528 kb on - strand, within Synpcc7942_0766 at 758.528 kb on - strand, within Synpcc7942_0766 at 758.542 kb on + strand, within Synpcc7942_0766 at 758.547 kb on + strand, within Synpcc7942_0766 at 758.578 kb on + strand, within Synpcc7942_0766 at 758.603 kb on + strand, within Synpcc7942_0766 at 758.604 kb on - strand, within Synpcc7942_0766 at 758.613 kb on - strand, within Synpcc7942_0766 at 758.614 kb on - strand, within Synpcc7942_0766 at 758.615 kb on + strand, within Synpcc7942_0766 at 758.615 kb on + strand, within Synpcc7942_0766 at 758.616 kb on - strand, within Synpcc7942_0766 at 758.627 kb on + strand, within Synpcc7942_0766 at 758.655 kb on + strand, within Synpcc7942_0766 at 758.657 kb on - strand, within Synpcc7942_0766 at 758.681 kb on + strand, within Synpcc7942_0766 at 758.691 kb on + strand, within Synpcc7942_0766 at 758.703 kb on + strand, within Synpcc7942_0766 at 758.712 kb on + strand, within Synpcc7942_0766 at 758.735 kb on + strand, within Synpcc7942_0766 at 758.740 kb on + strand, within Synpcc7942_0766 at 758.743 kb on - strand, within Synpcc7942_0766 at 758.748 kb on - strand, within Synpcc7942_0766 at 758.750 kb on + strand, within Synpcc7942_0766 at 758.761 kb on + strand, within Synpcc7942_0766 at 758.763 kb on - strand, within Synpcc7942_0766 at 758.767 kb on + strand, within Synpcc7942_0766 at 758.767 kb on + strand, within Synpcc7942_0766 at 758.767 kb on + strand, within Synpcc7942_0766 at 758.768 kb on - strand, within Synpcc7942_0766 at 758.768 kb on - strand, within Synpcc7942_0766 at 758.769 kb on - strand, within Synpcc7942_0766 at 758.779 kb on - strand, within Synpcc7942_0766 at 758.793 kb on - strand, within Synpcc7942_0766 at 758.809 kb on + strand, within Synpcc7942_0766 at 758.818 kb on - strand, within Synpcc7942_0766 at 758.818 kb on - strand, within Synpcc7942_0766 at 758.823 kb on - strand, within Synpcc7942_0766 at 758.835 kb on + strand, within Synpcc7942_0766 at 758.835 kb on + strand, within Synpcc7942_0766 at 758.843 kb on - strand, within Synpcc7942_0766 at 758.845 kb on + strand, within Synpcc7942_0766 at 758.845 kb on + strand, within Synpcc7942_0766 at 758.853 kb on - strand, within Synpcc7942_0766 at 758.853 kb on - strand, within Synpcc7942_0766 at 758.866 kb on - strand at 758.878 kb on + strand, within Synpcc7942_0766 at 758.893 kb on + strand, within Synpcc7942_0766 at 758.911 kb on - strand, within Synpcc7942_0766 at 758.912 kb on + strand, within Synpcc7942_0766 at 758.913 kb on + strand, within Synpcc7942_0766 at 758.913 kb on + strand, within Synpcc7942_0766 at 758.921 kb on + strand, within Synpcc7942_0766 at 758.921 kb on - strand, within Synpcc7942_0766 at 758.921 kb on - strand, within Synpcc7942_0766 at 758.923 kb on + strand, within Synpcc7942_0766 at 758.931 kb on - strand, within Synpcc7942_0766 at 758.970 kb on + strand, within Synpcc7942_0766 at 758.980 kb on + strand at 758.986 kb on - strand at 758.986 kb on - strand at 758.990 kb on + strand at 759.000 kb on + strand at 759.024 kb on + strand at 759.033 kb on + strand at 759.034 kb on - strand at 759.038 kb on + strand at 759.039 kb on - strand at 759.039 kb on - strand at 759.044 kb on + strand at 759.045 kb on + strand at 759.045 kb on + strand at 759.046 kb on - strand at 759.046 kb on - strand at 759.049 kb on - strand at 759.051 kb on - strand at 759.053 kb on - strand at 759.053 kb on - strand at 759.079 kb on + strand at 759.099 kb on + strand at 759.100 kb on + strand at 759.112 kb on - strand at 759.120 kb on - strand at 759.157 kb on - strand at 759.221 kb on + strand at 759.264 kb on - strand at 759.264 kb on - strand at 759.280 kb on + strand at 759.280 kb on + strand at 759.363 kb on + strand at 759.363 kb on + strand at 759.363 kb on + strand at 759.371 kb on - strand at 759.371 kb on - strand at 759.371 kb on - strand at 759.386 kb on + strand at 759.394 kb on - strand at 759.394 kb on - strand at 759.394 kb on - strand at 759.394 kb on - strand at 759.437 kb on - strand at 759.449 kb on + strand at 759.451 kb on + strand at 759.456 kb on + strand at 759.469 kb on - strand, within Synpcc7942_0767 at 759.474 kb on - strand, within Synpcc7942_0767 at 759.487 kb on + strand, within Synpcc7942_0767 at 759.495 kb on - strand, within Synpcc7942_0767 at 759.511 kb on + strand, within Synpcc7942_0767 at 759.519 kb on - strand, within Synpcc7942_0767 at 759.522 kb on + strand, within Synpcc7942_0767 at 759.530 kb on - strand, within Synpcc7942_0767 at 759.530 kb on - strand, within Synpcc7942_0767 at 759.530 kb on - strand, within Synpcc7942_0767 at 759.530 kb on - strand, within Synpcc7942_0767 at 759.536 kb on + strand, within Synpcc7942_0767 at 759.537 kb on - strand, within Synpcc7942_0767 at 759.570 kb on + strand, within Synpcc7942_0767 at 759.573 kb on - strand, within Synpcc7942_0767 at 759.573 kb on - strand, within Synpcc7942_0767 at 759.578 kb on - strand, within Synpcc7942_0767 at 759.584 kb on - strand, within Synpcc7942_0767 at 759.629 kb on + strand, within Synpcc7942_0767 at 759.653 kb on + strand, within Synpcc7942_0767 at 759.653 kb on + strand, within Synpcc7942_0767 at 759.698 kb on + strand, within Synpcc7942_0767 at 759.698 kb on + strand, within Synpcc7942_0767 at 759.698 kb on + strand, within Synpcc7942_0767 at 759.698 kb on + strand, within Synpcc7942_0767 at 759.706 kb on - strand, within Synpcc7942_0767 at 759.711 kb on + strand, within Synpcc7942_0767 at 759.711 kb on - strand, within Synpcc7942_0767 at 759.730 kb on + strand, within Synpcc7942_0767 at 759.730 kb on + strand, within Synpcc7942_0767 at 759.738 kb on - strand, within Synpcc7942_0767 at 759.785 kb on - strand, within Synpcc7942_0767 at 759.814 kb on + strand at 759.834 kb on - strand at 759.913 kb on - strand at 759.961 kb on + strand at 759.973 kb on + strand at 759.978 kb on + strand at 760.015 kb on + strand at 760.015 kb on + strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.023 kb on - strand at 760.084 kb on + strand at 760.093 kb on + strand at 760.101 kb on - strand at 760.101 kb on - strand at 760.101 kb on - strand at 760.103 kb on + strand at 760.106 kb on - strand at 760.125 kb on - strand at 760.142 kb on - strand at 760.158 kb on - strand at 760.165 kb on + strand at 760.165 kb on + strand at 760.202 kb on + strand at 760.202 kb on + strand at 760.207 kb on - strand at 760.210 kb on - strand at 760.222 kb on - strand at 760.244 kb on + strand at 760.252 kb on - strand at 760.252 kb on - strand at 760.252 kb on - strand at 760.252 kb on - strand at 760.260 kb on - strand at 760.311 kb on + strand at 760.337 kb on + strand at 760.337 kb on + strand at 760.342 kb on - strand at 760.345 kb on - strand at 760.347 kb on - strand at 760.349 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.380 kb on + strand at 760.388 kb on - strand at 760.388 kb on - strand at 760.388 kb on - strand at 760.388 kb on - strand at 760.388 kb on - strand at 760.390 kb on + strand at 760.390 kb on + strand at 760.398 kb on - strand at 760.398 kb on - strand at 760.400 kb on - strand at 760.417 kb on - strand at 760.457 kb on + strand at 760.457 kb on + strand at 760.489 kb on - strand at 760.589 kb on + strand, within Synpcc7942_0768 at 760.626 kb on + strand, within Synpcc7942_0768 at 760.633 kb on - strand, within Synpcc7942_0768 at 760.639 kb on + strand, within Synpcc7942_0768 at 760.644 kb on - strand, within Synpcc7942_0768 at 760.666 kb on - strand, within Synpcc7942_0768 at 760.704 kb on + strand, within Synpcc7942_0768 at 760.706 kb on + strand, within Synpcc7942_0768 at 760.712 kb on - strand, within Synpcc7942_0768 at 760.714 kb on - strand, within Synpcc7942_0768 at 760.714 kb on - strand, within Synpcc7942_0768 at 760.755 kb on + strand, within Synpcc7942_0768 at 760.755 kb on - strand, within Synpcc7942_0768 at 760.763 kb on - strand, within Synpcc7942_0768 at 760.769 kb on - strand, within Synpcc7942_0768 at 760.770 kb on + strand, within Synpcc7942_0768 at 760.783 kb on - strand, within Synpcc7942_0768 at 760.817 kb on - strand, within Synpcc7942_0768 at 760.833 kb on + strand, within Synpcc7942_0768 at 760.841 kb on - strand, within Synpcc7942_0768 at 760.844 kb on + strand, within Synpcc7942_0768
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 758,420 + -2.1 758,420 + +1.5 758,437 + +1.1 758,437 - +0.9 758,520 + Synpcc7942_0766 0.20 +0.9 758,520 + Synpcc7942_0766 0.20 +0.1 758,525 + Synpcc7942_0766 0.21 -0.2 758,525 + Synpcc7942_0766 0.21 +0.7 758,528 - Synpcc7942_0766 0.21 +1.0 758,528 - Synpcc7942_0766 0.21 +0.7 758,528 - Synpcc7942_0766 0.21 -0.3 758,542 + Synpcc7942_0766 0.23 +0.5 758,547 + Synpcc7942_0766 0.24 +0.7 758,578 + Synpcc7942_0766 0.29 +0.9 758,603 + Synpcc7942_0766 0.33 +1.5 758,604 - Synpcc7942_0766 0.33 -0.8 758,613 - Synpcc7942_0766 0.34 -0.4 758,614 - Synpcc7942_0766 0.35 -2.1 758,615 + Synpcc7942_0766 0.35 -1.1 758,615 + Synpcc7942_0766 0.35 +2.0 758,616 - Synpcc7942_0766 0.35 -2.7 758,627 + Synpcc7942_0766 0.37 -0.1 758,655 + Synpcc7942_0766 0.41 -0.3 758,657 - Synpcc7942_0766 0.41 -0.9 758,681 + Synpcc7942_0766 0.45 -0.7 758,691 + Synpcc7942_0766 0.46 +0.6 758,703 + Synpcc7942_0766 0.48 +0.8 758,712 + Synpcc7942_0766 0.50 -0.1 758,735 + Synpcc7942_0766 0.53 -0.1 758,740 + Synpcc7942_0766 0.54 -1.1 758,743 - Synpcc7942_0766 0.54 -1.7 758,748 - Synpcc7942_0766 0.55 -1.7 758,750 + Synpcc7942_0766 0.56 -0.3 758,761 + Synpcc7942_0766 0.57 +2.2 758,763 - Synpcc7942_0766 0.58 +0.3 758,767 + Synpcc7942_0766 0.58 +2.2 758,767 + Synpcc7942_0766 0.58 -0.3 758,767 + Synpcc7942_0766 0.58 -0.1 758,768 - Synpcc7942_0766 0.58 -0.2 758,768 - Synpcc7942_0766 0.58 -2.7 758,769 - Synpcc7942_0766 0.58 +0.9 758,779 - Synpcc7942_0766 0.60 -0.7 758,793 - Synpcc7942_0766 0.62 -0.4 758,809 + Synpcc7942_0766 0.65 -0.8 758,818 - Synpcc7942_0766 0.66 -2.4 758,818 - Synpcc7942_0766 0.66 +0.4 758,823 - Synpcc7942_0766 0.67 +1.4 758,835 + Synpcc7942_0766 0.69 +1.4 758,835 + Synpcc7942_0766 0.69 -1.6 758,843 - Synpcc7942_0766 0.70 +0.4 758,845 + Synpcc7942_0766 0.70 +0.2 758,845 + Synpcc7942_0766 0.70 -2.1 758,853 - Synpcc7942_0766 0.71 -0.8 758,853 - Synpcc7942_0766 0.71 -0.4 758,866 - -1.1 758,878 + Synpcc7942_0766 0.75 -0.6 758,893 + Synpcc7942_0766 0.78 -2.7 758,911 - Synpcc7942_0766 0.80 +0.8 758,912 + Synpcc7942_0766 0.81 +2.5 758,913 + Synpcc7942_0766 0.81 -0.3 758,913 + Synpcc7942_0766 0.81 +2.0 758,921 + Synpcc7942_0766 0.82 -0.8 758,921 - Synpcc7942_0766 0.82 -0.7 758,921 - Synpcc7942_0766 0.82 +1.8 758,923 + Synpcc7942_0766 0.82 +2.2 758,931 - Synpcc7942_0766 0.83 -3.1 758,970 + Synpcc7942_0766 0.90 -1.0 758,980 + +0.5 758,986 - -0.8 758,986 - +0.9 758,990 + -0.1 759,000 + -1.1 759,024 + -1.1 759,033 + +0.1 759,034 - -0.1 759,038 + -0.1 759,039 - +1.7 759,039 - -1.4 759,044 + +0.1 759,045 + +0.0 759,045 + +0.3 759,046 - -0.7 759,046 - +0.3 759,049 - -0.7 759,051 - -2.2 759,053 - -1.4 759,053 - -1.5 759,079 + +0.4 759,099 + -0.6 759,100 + -0.5 759,112 - +0.5 759,120 - +1.0 759,157 - -1.0 759,221 + -0.1 759,264 - -0.9 759,264 - +0.1 759,280 + -1.1 759,280 + -1.7 759,363 + +0.5 759,363 + -0.1 759,363 + +0.6 759,371 - +0.2 759,371 - +2.1 759,371 - -2.1 759,386 + -1.1 759,394 - +0.9 759,394 - -0.3 759,394 - -0.1 759,394 - +0.5 759,437 - -1.3 759,449 + -0.1 759,451 + +0.1 759,456 + -1.1 759,469 - Synpcc7942_0767 0.13 -0.8 759,474 - Synpcc7942_0767 0.14 +0.6 759,487 + Synpcc7942_0767 0.17 +0.4 759,495 - Synpcc7942_0767 0.19 +0.6 759,511 + Synpcc7942_0767 0.23 -0.8 759,519 - Synpcc7942_0767 0.24 +1.1 759,522 + Synpcc7942_0767 0.25 -0.3 759,530 - Synpcc7942_0767 0.27 +0.1 759,530 - Synpcc7942_0767 0.27 +0.1 759,530 - Synpcc7942_0767 0.27 -0.3 759,530 - Synpcc7942_0767 0.27 -0.1 759,536 + Synpcc7942_0767 0.28 -0.7 759,537 - Synpcc7942_0767 0.29 +0.4 759,570 + Synpcc7942_0767 0.36 +0.6 759,573 - Synpcc7942_0767 0.37 -0.3 759,573 - Synpcc7942_0767 0.37 +0.8 759,578 - Synpcc7942_0767 0.38 -0.6 759,584 - Synpcc7942_0767 0.39 +0.4 759,629 + Synpcc7942_0767 0.50 -1.1 759,653 + Synpcc7942_0767 0.55 +0.9 759,653 + Synpcc7942_0767 0.55 +0.2 759,698 + Synpcc7942_0767 0.66 +0.6 759,698 + Synpcc7942_0767 0.66 +2.5 759,698 + Synpcc7942_0767 0.66 -1.4 759,698 + Synpcc7942_0767 0.66 -1.1 759,706 - Synpcc7942_0767 0.67 +0.6 759,711 + Synpcc7942_0767 0.69 +0.0 759,711 - Synpcc7942_0767 0.69 +0.9 759,730 + Synpcc7942_0767 0.73 +0.3 759,730 + Synpcc7942_0767 0.73 +0.3 759,738 - Synpcc7942_0767 0.75 +1.5 759,785 - Synpcc7942_0767 0.86 +0.7 759,814 + -0.8 759,834 - -0.9 759,913 - -1.7 759,961 + +1.3 759,973 + -1.7 759,978 + -1.1 760,015 + -0.2 760,015 + -0.1 760,023 - -1.5 760,023 - +0.8 760,023 - +0.9 760,023 - +0.5 760,023 - +0.5 760,023 - +1.5 760,023 - +0.5 760,023 - +1.5 760,023 - -0.5 760,084 + -0.1 760,093 + +0.9 760,101 - +1.6 760,101 - -0.1 760,101 - -3.0 760,103 + +0.9 760,106 - +1.5 760,125 - -0.4 760,142 - -0.1 760,158 - -1.1 760,165 + -1.9 760,165 + +0.1 760,202 + -0.0 760,202 + +1.1 760,207 - -0.8 760,210 - +0.9 760,222 - +0.4 760,244 + +0.9 760,252 - +0.3 760,252 - -1.1 760,252 - +1.6 760,252 - -0.6 760,260 - -0.5 760,311 + -0.1 760,337 + -0.7 760,337 + -1.4 760,342 - -0.2 760,345 - -1.5 760,347 - +1.3 760,349 + -0.1 760,380 + +0.3 760,380 + -0.4 760,380 + +0.5 760,380 + +0.3 760,380 + +0.4 760,380 + -0.7 760,380 + -0.0 760,380 + -1.1 760,380 + -0.1 760,380 + -1.2 760,380 + +0.3 760,380 + +0.4 760,388 - -3.1 760,388 - -2.1 760,388 - +1.5 760,388 - +0.8 760,388 - +0.8 760,390 + -0.9 760,390 + +1.3 760,398 - -0.3 760,398 - -1.1 760,400 - -1.1 760,417 - +0.2 760,457 + +0.7 760,457 + +2.2 760,489 - +0.2 760,589 + Synpcc7942_0768 0.10 -1.8 760,626 + Synpcc7942_0768 0.16 +1.6 760,633 - Synpcc7942_0768 0.17 -1.1 760,639 + Synpcc7942_0768 0.18 +1.5 760,644 - Synpcc7942_0768 0.19 -1.2 760,666 - Synpcc7942_0768 0.22 -0.6 760,704 + Synpcc7942_0768 0.28 -0.6 760,706 + Synpcc7942_0768 0.28 +0.7 760,712 - Synpcc7942_0768 0.29 +0.5 760,714 - Synpcc7942_0768 0.29 +0.5 760,714 - Synpcc7942_0768 0.29 -0.4 760,755 + Synpcc7942_0768 0.35 -1.1 760,755 - Synpcc7942_0768 0.35 +1.3 760,763 - Synpcc7942_0768 0.37 +0.6 760,769 - Synpcc7942_0768 0.38 +0.2 760,770 + Synpcc7942_0768 0.38 +0.0 760,783 - Synpcc7942_0768 0.40 +2.0 760,817 - Synpcc7942_0768 0.45 -1.2 760,833 + Synpcc7942_0768 0.47 -0.3 760,841 - Synpcc7942_0768 0.49 -1.5 760,844 + Synpcc7942_0768 0.49 +2.2
Or see this region's nucleotide sequence