Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0756

Experiment: D-Cycloserine 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0754 and Synpcc7942_0755 overlap by 1 nucleotidesSynpcc7942_0755 and Synpcc7942_0756 are separated by 396 nucleotidesSynpcc7942_0756 and Synpcc7942_0757 are separated by 406 nucleotides Synpcc7942_0754: Synpcc7942_0754 - hypothetical protein, at 749,183 to 749,431 _0754 Synpcc7942_0755: Synpcc7942_0755 - hypothetical protein, at 749,431 to 750,009 _0755 Synpcc7942_0756: Synpcc7942_0756 - chain A, D20c mutant of T4 lysozyme, at 750,406 to 750,870 _0756 Synpcc7942_0757: Synpcc7942_0757 - hypothetical protein, at 751,277 to 751,957 _0757 Position (kb) 750 751Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 749.414 kb on + strandat 749.426 kb on + strandat 749.438 kb on + strandat 749.455 kb on - strandat 749.492 kb on - strand, within Synpcc7942_0755at 749.497 kb on - strand, within Synpcc7942_0755at 749.497 kb on - strand, within Synpcc7942_0755at 749.497 kb on - strand, within Synpcc7942_0755at 749.497 kb on - strand, within Synpcc7942_0755at 749.517 kb on - strand, within Synpcc7942_0755at 749.517 kb on - strand, within Synpcc7942_0755at 749.517 kb on - strand, within Synpcc7942_0755at 749.517 kb on - strand, within Synpcc7942_0755at 749.517 kb on - strand, within Synpcc7942_0755at 749.517 kb on - strand, within Synpcc7942_0755at 749.545 kb on + strand, within Synpcc7942_0755at 749.550 kb on + strand, within Synpcc7942_0755at 749.550 kb on + strand, within Synpcc7942_0755at 749.550 kb on + strand, within Synpcc7942_0755at 749.550 kb on + strand, within Synpcc7942_0755at 749.555 kb on + strand, within Synpcc7942_0755at 749.558 kb on - strand, within Synpcc7942_0755at 749.558 kb on - strand, within Synpcc7942_0755at 749.558 kb on - strand, within Synpcc7942_0755at 749.565 kb on + strand, within Synpcc7942_0755at 749.565 kb on + strand, within Synpcc7942_0755at 749.565 kb on + strand, within Synpcc7942_0755at 749.573 kb on - strand, within Synpcc7942_0755at 749.573 kb on - strand, within Synpcc7942_0755at 749.573 kb on - strand, within Synpcc7942_0755at 749.573 kb on - strand, within Synpcc7942_0755at 749.573 kb on - strand, within Synpcc7942_0755at 749.573 kb on - strand, within Synpcc7942_0755at 749.601 kb on - strand, within Synpcc7942_0755at 749.611 kb on - strand, within Synpcc7942_0755at 749.614 kb on + strand, within Synpcc7942_0755at 749.614 kb on + strand, within Synpcc7942_0755at 749.622 kb on - strand, within Synpcc7942_0755at 749.622 kb on - strand, within Synpcc7942_0755at 749.627 kb on + strand, within Synpcc7942_0755at 749.651 kb on + strand, within Synpcc7942_0755at 749.659 kb on - strand, within Synpcc7942_0755at 749.661 kb on + strand, within Synpcc7942_0755at 749.668 kb on - strand, within Synpcc7942_0755at 749.670 kb on - strand, within Synpcc7942_0755at 749.695 kb on - strand, within Synpcc7942_0755at 749.715 kb on - strand, within Synpcc7942_0755at 749.757 kb on - strand, within Synpcc7942_0755at 749.757 kb on - strand, within Synpcc7942_0755at 749.775 kb on + strand, within Synpcc7942_0755at 749.788 kb on + strand, within Synpcc7942_0755at 749.840 kb on + strand, within Synpcc7942_0755at 749.848 kb on - strand, within Synpcc7942_0755at 749.848 kb on - strand, within Synpcc7942_0755at 749.848 kb on - strand, within Synpcc7942_0755at 749.858 kb on + strand, within Synpcc7942_0755at 749.863 kb on + strand, within Synpcc7942_0755at 749.871 kb on - strand, within Synpcc7942_0755at 749.878 kb on + strand, within Synpcc7942_0755at 749.879 kb on - strand, within Synpcc7942_0755at 749.902 kb on + strand, within Synpcc7942_0755at 749.922 kb on - strand, within Synpcc7942_0755at 749.927 kb on - strand, within Synpcc7942_0755at 749.954 kb on - strandat 749.973 kb on + strandat 749.973 kb on - strandat 749.993 kb on - strandat 750.003 kb on - strandat 750.039 kb on - strandat 750.039 kb on - strandat 750.068 kb on - strandat 750.103 kb on - strandat 750.118 kb on + strandat 750.134 kb on + strandat 750.169 kb on + strandat 750.187 kb on - strandat 750.211 kb on - strandat 750.245 kb on - strandat 750.250 kb on + strandat 750.331 kb on + strandat 750.339 kb on - strandat 750.348 kb on - strandat 750.352 kb on + strandat 750.354 kb on - strandat 750.354 kb on - strandat 750.355 kb on + strandat 750.360 kb on - strandat 750.363 kb on - strandat 750.390 kb on + strandat 750.417 kb on + strandat 750.438 kb on + strandat 750.480 kb on + strand, within Synpcc7942_0756at 750.489 kb on - strand, within Synpcc7942_0756at 750.502 kb on + strand, within Synpcc7942_0756at 750.571 kb on - strand, within Synpcc7942_0756at 750.597 kb on - strand, within Synpcc7942_0756at 750.605 kb on - strand, within Synpcc7942_0756at 750.618 kb on + strand, within Synpcc7942_0756at 750.623 kb on + strand, within Synpcc7942_0756at 750.631 kb on - strand, within Synpcc7942_0756at 750.634 kb on + strand, within Synpcc7942_0756at 750.639 kb on + strand, within Synpcc7942_0756at 750.644 kb on + strand, within Synpcc7942_0756at 750.644 kb on + strand, within Synpcc7942_0756at 750.652 kb on - strand, within Synpcc7942_0756at 750.654 kb on + strand, within Synpcc7942_0756at 750.717 kb on + strand, within Synpcc7942_0756at 750.726 kb on + strand, within Synpcc7942_0756at 750.742 kb on - strand, within Synpcc7942_0756at 750.742 kb on - strand, within Synpcc7942_0756at 750.742 kb on - strand, within Synpcc7942_0756at 750.756 kb on + strand, within Synpcc7942_0756at 750.762 kb on + strand, within Synpcc7942_0756at 750.772 kb on + strand, within Synpcc7942_0756at 750.781 kb on + strand, within Synpcc7942_0756at 750.783 kb on + strand, within Synpcc7942_0756at 750.789 kb on - strand, within Synpcc7942_0756at 750.792 kb on + strand, within Synpcc7942_0756at 750.792 kb on + strand, within Synpcc7942_0756at 750.792 kb on + strand, within Synpcc7942_0756at 750.797 kb on + strand, within Synpcc7942_0756at 750.800 kb on - strand, within Synpcc7942_0756at 750.800 kb on - strand, within Synpcc7942_0756at 750.800 kb on - strand, within Synpcc7942_0756at 750.802 kb on + strand, within Synpcc7942_0756at 750.802 kb on + strand, within Synpcc7942_0756at 750.818 kb on - strand, within Synpcc7942_0756at 750.821 kb on + strand, within Synpcc7942_0756at 750.853 kb on - strandat 750.859 kb on - strandat 750.868 kb on - strandat 750.879 kb on - strandat 750.927 kb on - strandat 751.023 kb on + strandat 751.047 kb on + strandat 751.099 kb on + strandat 751.441 kb on + strand, within Synpcc7942_0757at 751.523 kb on - strand, within Synpcc7942_0757at 751.712 kb on - strand, within Synpcc7942_0757at 751.712 kb on - strand, within Synpcc7942_0757

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
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749,414 + -1.5
749,426 + +0.2
749,438 + +0.9
749,455 - +0.8
749,492 - Synpcc7942_0755 0.11 -1.4
749,497 - Synpcc7942_0755 0.11 -0.2
749,497 - Synpcc7942_0755 0.11 +0.5
749,497 - Synpcc7942_0755 0.11 -0.5
749,497 - Synpcc7942_0755 0.11 -3.1
749,517 - Synpcc7942_0755 0.15 +0.3
749,517 - Synpcc7942_0755 0.15 -1.3
749,517 - Synpcc7942_0755 0.15 +0.3
749,517 - Synpcc7942_0755 0.15 -0.1
749,517 - Synpcc7942_0755 0.15 -1.4
749,517 - Synpcc7942_0755 0.15 +0.5
749,545 + Synpcc7942_0755 0.20 +0.7
749,550 + Synpcc7942_0755 0.21 +0.3
749,550 + Synpcc7942_0755 0.21 -1.1
749,550 + Synpcc7942_0755 0.21 +0.5
749,550 + Synpcc7942_0755 0.21 +0.8
749,555 + Synpcc7942_0755 0.21 -1.2
749,558 - Synpcc7942_0755 0.22 +0.9
749,558 - Synpcc7942_0755 0.22 +1.4
749,558 - Synpcc7942_0755 0.22 -0.6
749,565 + Synpcc7942_0755 0.23 -2.1
749,565 + Synpcc7942_0755 0.23 +1.2
749,565 + Synpcc7942_0755 0.23 -0.3
749,573 - Synpcc7942_0755 0.25 +0.5
749,573 - Synpcc7942_0755 0.25 +1.9
749,573 - Synpcc7942_0755 0.25 +1.9
749,573 - Synpcc7942_0755 0.25 +0.3
749,573 - Synpcc7942_0755 0.25 -1.1
749,573 - Synpcc7942_0755 0.25 -1.1
749,601 - Synpcc7942_0755 0.29 +1.1
749,611 - Synpcc7942_0755 0.31 -1.0
749,614 + Synpcc7942_0755 0.32 +1.9
749,614 + Synpcc7942_0755 0.32 +1.3
749,622 - Synpcc7942_0755 0.33 -1.7
749,622 - Synpcc7942_0755 0.33 -0.6
749,627 + Synpcc7942_0755 0.34 -0.5
749,651 + Synpcc7942_0755 0.38 +0.8
749,659 - Synpcc7942_0755 0.39 +0.5
749,661 + Synpcc7942_0755 0.40 -0.5
749,668 - Synpcc7942_0755 0.41 -0.8
749,670 - Synpcc7942_0755 0.41 -1.7
749,695 - Synpcc7942_0755 0.46 -0.4
749,715 - Synpcc7942_0755 0.49 -0.1
749,757 - Synpcc7942_0755 0.56 -0.8
749,757 - Synpcc7942_0755 0.56 -0.2
749,775 + Synpcc7942_0755 0.59 +2.2
749,788 + Synpcc7942_0755 0.62 +0.2
749,840 + Synpcc7942_0755 0.71 +1.5
749,848 - Synpcc7942_0755 0.72 +0.2
749,848 - Synpcc7942_0755 0.72 +0.5
749,848 - Synpcc7942_0755 0.72 -0.1
749,858 + Synpcc7942_0755 0.74 -0.0
749,863 + Synpcc7942_0755 0.75 -0.4
749,871 - Synpcc7942_0755 0.76 -0.7
749,878 + Synpcc7942_0755 0.77 +0.6
749,879 - Synpcc7942_0755 0.77 +0.1
749,902 + Synpcc7942_0755 0.81 -0.5
749,922 - Synpcc7942_0755 0.85 -1.3
749,927 - Synpcc7942_0755 0.86 +0.5
749,954 - -0.2
749,973 + -2.1
749,973 - +0.3
749,993 - +0.5
750,003 - -2.1
750,039 - +0.7
750,039 - +0.7
750,068 - -1.2
750,103 - +3.6
750,118 + +0.1
750,134 + -0.7
750,169 + -0.1
750,187 - -2.9
750,211 - -0.1
750,245 - +0.2
750,250 + -1.1
750,331 + +1.3
750,339 - -1.4
750,348 - +0.5
750,352 + -0.1
750,354 - -1.9
750,354 - +1.1
750,355 + -0.2
750,360 - +1.2
750,363 - -2.1
750,390 + +0.4
750,417 + +0.6
750,438 + +0.3
750,480 + Synpcc7942_0756 0.16 +2.2
750,489 - Synpcc7942_0756 0.18 -0.5
750,502 + Synpcc7942_0756 0.21 -0.5
750,571 - Synpcc7942_0756 0.35 +0.9
750,597 - Synpcc7942_0756 0.41 +0.9
750,605 - Synpcc7942_0756 0.43 +0.6
750,618 + Synpcc7942_0756 0.46 +0.6
750,623 + Synpcc7942_0756 0.47 +0.1
750,631 - Synpcc7942_0756 0.48 -0.4
750,634 + Synpcc7942_0756 0.49 +1.7
750,639 + Synpcc7942_0756 0.50 -1.4
750,644 + Synpcc7942_0756 0.51 -0.7
750,644 + Synpcc7942_0756 0.51 +0.3
750,652 - Synpcc7942_0756 0.53 +0.3
750,654 + Synpcc7942_0756 0.53 -0.1
750,717 + Synpcc7942_0756 0.67 +0.5
750,726 + Synpcc7942_0756 0.69 -0.7
750,742 - Synpcc7942_0756 0.72 -1.6
750,742 - Synpcc7942_0756 0.72 +1.5
750,742 - Synpcc7942_0756 0.72 +0.4
750,756 + Synpcc7942_0756 0.75 +0.3
750,762 + Synpcc7942_0756 0.77 -0.0
750,772 + Synpcc7942_0756 0.79 +0.7
750,781 + Synpcc7942_0756 0.81 -1.1
750,783 + Synpcc7942_0756 0.81 -0.1
750,789 - Synpcc7942_0756 0.82 +2.5
750,792 + Synpcc7942_0756 0.83 -0.2
750,792 + Synpcc7942_0756 0.83 -2.1
750,792 + Synpcc7942_0756 0.83 +2.5
750,797 + Synpcc7942_0756 0.84 +1.4
750,800 - Synpcc7942_0756 0.85 -1.1
750,800 - Synpcc7942_0756 0.85 +1.5
750,800 - Synpcc7942_0756 0.85 -0.2
750,802 + Synpcc7942_0756 0.85 +1.2
750,802 + Synpcc7942_0756 0.85 +0.7
750,818 - Synpcc7942_0756 0.89 -1.0
750,821 + Synpcc7942_0756 0.89 -0.3
750,853 - +0.3
750,859 - +0.4
750,868 - -0.7
750,879 - -0.3
750,927 - -0.3
751,023 + -2.7
751,047 + +0.1
751,099 + -2.4
751,441 + Synpcc7942_0757 0.24 -0.2
751,523 - Synpcc7942_0757 0.36 +0.5
751,712 - Synpcc7942_0757 0.64 -0.1
751,712 - Synpcc7942_0757 0.64 -0.1

Or see this region's nucleotide sequence