Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0708 and Synpcc7942_0709 are separated by 51 nucleotides Synpcc7942_0709 and Synpcc7942_0710 are separated by 2 nucleotides Synpcc7942_0710 and carB are separated by 65 nucleotides
Synpcc7942_0708: Synpcc7942_0708 - hypothetical protein, at 698,708 to 700,459
_0708
Synpcc7942_0709: Synpcc7942_0709 - hypothetical protein, at 700,511 to 700,840
_0709
Synpcc7942_0710: Synpcc7942_0710 - hypothetical protein, at 700,843 to 701,538
_0710
Synpcc7942_0711: carB - carbamoyl phosphate synthase large subunit, at 701,604 to 704,897
carB
Position (kb) 700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 699.514 kb on - strand, within Synpcc7942_0708 at 699.635 kb on + strand, within Synpcc7942_0708 at 699.674 kb on + strand, within Synpcc7942_0708 at 699.674 kb on + strand, within Synpcc7942_0708 at 699.674 kb on + strand, within Synpcc7942_0708 at 699.689 kb on + strand, within Synpcc7942_0708 at 699.690 kb on - strand, within Synpcc7942_0708 at 699.696 kb on - strand, within Synpcc7942_0708 at 699.799 kb on + strand, within Synpcc7942_0708 at 699.799 kb on - strand, within Synpcc7942_0708 at 699.809 kb on - strand, within Synpcc7942_0708 at 699.828 kb on + strand, within Synpcc7942_0708 at 699.855 kb on + strand, within Synpcc7942_0708 at 699.862 kb on - strand, within Synpcc7942_0708 at 699.863 kb on - strand, within Synpcc7942_0708 at 699.863 kb on - strand, within Synpcc7942_0708 at 699.866 kb on + strand at 699.879 kb on - strand, within Synpcc7942_0708 at 699.915 kb on + strand, within Synpcc7942_0708 at 699.935 kb on + strand, within Synpcc7942_0708 at 699.984 kb on + strand, within Synpcc7942_0708 at 700.018 kb on - strand, within Synpcc7942_0708 at 700.082 kb on + strand, within Synpcc7942_0708 at 700.090 kb on - strand, within Synpcc7942_0708 at 700.132 kb on - strand, within Synpcc7942_0708 at 700.225 kb on - strand, within Synpcc7942_0708 at 700.262 kb on - strand, within Synpcc7942_0708 at 700.267 kb on + strand, within Synpcc7942_0708 at 700.288 kb on + strand at 700.296 kb on - strand at 700.316 kb on + strand at 700.324 kb on - strand at 700.324 kb on - strand at 700.338 kb on - strand at 700.357 kb on - strand at 700.389 kb on + strand at 700.482 kb on + strand at 700.484 kb on + strand at 700.490 kb on - strand at 700.492 kb on - strand at 700.492 kb on - strand at 700.492 kb on - strand at 700.492 kb on - strand at 700.519 kb on + strand at 700.526 kb on + strand at 700.526 kb on + strand at 700.526 kb on + strand at 700.526 kb on + strand at 700.534 kb on - strand at 700.573 kb on + strand, within Synpcc7942_0709 at 700.607 kb on + strand, within Synpcc7942_0709 at 700.621 kb on + strand, within Synpcc7942_0709 at 700.622 kb on + strand, within Synpcc7942_0709 at 700.631 kb on + strand, within Synpcc7942_0709 at 700.641 kb on - strand, within Synpcc7942_0709 at 700.648 kb on + strand, within Synpcc7942_0709 at 700.746 kb on - strand, within Synpcc7942_0709 at 700.774 kb on + strand, within Synpcc7942_0709 at 700.774 kb on + strand, within Synpcc7942_0709 at 700.774 kb on + strand, within Synpcc7942_0709 at 700.782 kb on - strand, within Synpcc7942_0709 at 700.782 kb on - strand, within Synpcc7942_0709 at 700.782 kb on - strand, within Synpcc7942_0709 at 700.816 kb on + strand at 700.840 kb on + strand at 700.848 kb on - strand at 700.848 kb on - strand at 700.848 kb on - strand at 700.848 kb on - strand at 700.848 kb on - strand at 701.529 kb on - strand at 701.544 kb on + strand at 701.544 kb on + strand at 701.552 kb on - strand at 701.552 kb on - strand at 701.552 kb on - strand at 701.558 kb on - strand at 701.560 kb on + strand at 701.567 kb on + strand at 701.575 kb on - strand at 701.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 699,514 - Synpcc7942_0708 0.46 +0.5 699,635 + Synpcc7942_0708 0.53 -0.0 699,674 + Synpcc7942_0708 0.55 -0.5 699,674 + Synpcc7942_0708 0.55 -0.1 699,674 + Synpcc7942_0708 0.55 -0.9 699,689 + Synpcc7942_0708 0.56 -0.1 699,690 - Synpcc7942_0708 0.56 +0.1 699,696 - Synpcc7942_0708 0.56 -2.3 699,799 + Synpcc7942_0708 0.62 -0.6 699,799 - Synpcc7942_0708 0.62 +0.6 699,809 - Synpcc7942_0708 0.63 -0.1 699,828 + Synpcc7942_0708 0.64 -0.7 699,855 + Synpcc7942_0708 0.65 -0.7 699,862 - Synpcc7942_0708 0.66 -0.9 699,863 - Synpcc7942_0708 0.66 +0.8 699,863 - Synpcc7942_0708 0.66 -0.3 699,866 + -0.1 699,879 - Synpcc7942_0708 0.67 +0.6 699,915 + Synpcc7942_0708 0.69 -0.9 699,935 + Synpcc7942_0708 0.70 -1.4 699,984 + Synpcc7942_0708 0.73 +0.3 700,018 - Synpcc7942_0708 0.75 -0.4 700,082 + Synpcc7942_0708 0.78 -2.7 700,090 - Synpcc7942_0708 0.79 +0.1 700,132 - Synpcc7942_0708 0.81 +0.1 700,225 - Synpcc7942_0708 0.87 +1.9 700,262 - Synpcc7942_0708 0.89 -0.4 700,267 + Synpcc7942_0708 0.89 -0.9 700,288 + -0.7 700,296 - -0.1 700,316 + -0.1 700,324 - -0.1 700,324 - -0.4 700,338 - -0.8 700,357 - +1.5 700,389 + -1.8 700,482 + +1.0 700,484 + +1.9 700,490 - -1.7 700,492 - +0.7 700,492 - +1.9 700,492 - -1.1 700,492 - -1.7 700,519 + +0.3 700,526 + +0.5 700,526 + -0.7 700,526 + +1.1 700,526 + +0.7 700,534 - -0.1 700,573 + Synpcc7942_0709 0.19 -1.4 700,607 + Synpcc7942_0709 0.29 -0.8 700,621 + Synpcc7942_0709 0.33 +1.5 700,622 + Synpcc7942_0709 0.34 +0.1 700,631 + Synpcc7942_0709 0.36 -0.1 700,641 - Synpcc7942_0709 0.39 -1.9 700,648 + Synpcc7942_0709 0.42 +0.5 700,746 - Synpcc7942_0709 0.71 +0.6 700,774 + Synpcc7942_0709 0.80 +0.6 700,774 + Synpcc7942_0709 0.80 -3.4 700,774 + Synpcc7942_0709 0.80 +0.5 700,782 - Synpcc7942_0709 0.82 +1.2 700,782 - Synpcc7942_0709 0.82 +1.1 700,782 - Synpcc7942_0709 0.82 -0.1 700,816 + -0.3 700,840 + +0.9 700,848 - -3.1 700,848 - -0.7 700,848 - +0.1 700,848 - -0.4 700,848 - -0.4 701,529 - +0.5 701,544 + -0.6 701,544 + +0.3 701,552 - -2.4 701,552 - +0.5 701,552 - +1.6 701,558 - -0.3 701,560 + -0.3 701,567 + -0.7 701,575 - +1.1 701,608 - +1.1
Or see this region's nucleotide sequence