Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0652

Experiment: D-Cycloserine 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpriA and Synpcc7942_0652 overlap by 38 nucleotidesSynpcc7942_0652 and cdv1 overlap by 4 nucleotidescdv1 and ycf4 are separated by 1 nucleotides Synpcc7942_0651: priA - primosome assembly protein PriA, at 644,741 to 647,161 priA Synpcc7942_0652: Synpcc7942_0652 - hypothetical protein, at 647,124 to 648,713 _0652 Synpcc7942_0653: cdv1 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family-like, at 648,710 to 649,441 cdv1 Synpcc7942_0654: ycf4 - photosystem I assembly protein Ycf4, at 649,443 to 650,009 ycf4 Position (kb) 647 648 649Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 647.193 kb on - strandat 647.194 kb on + strandat 647.201 kb on - strandat 647.251 kb on - strandat 647.253 kb on + strandat 647.290 kb on + strand, within Synpcc7942_0652at 647.291 kb on + strand, within Synpcc7942_0652at 647.327 kb on - strand, within Synpcc7942_0652at 647.328 kb on + strand, within Synpcc7942_0652at 647.384 kb on - strand, within Synpcc7942_0652at 647.410 kb on + strand, within Synpcc7942_0652at 647.418 kb on - strand, within Synpcc7942_0652at 647.426 kb on - strand, within Synpcc7942_0652at 647.428 kb on - strand, within Synpcc7942_0652at 647.440 kb on + strand, within Synpcc7942_0652at 647.445 kb on - strandat 647.464 kb on - strand, within Synpcc7942_0652at 647.537 kb on + strand, within Synpcc7942_0652at 647.537 kb on + strand, within Synpcc7942_0652at 647.539 kb on + strand, within Synpcc7942_0652at 647.539 kb on + strand, within Synpcc7942_0652at 647.539 kb on + strand, within Synpcc7942_0652at 647.545 kb on - strand, within Synpcc7942_0652at 647.545 kb on - strand, within Synpcc7942_0652at 647.545 kb on - strand, within Synpcc7942_0652at 647.545 kb on - strand, within Synpcc7942_0652at 647.545 kb on - strand, within Synpcc7942_0652at 647.547 kb on - strand, within Synpcc7942_0652at 647.547 kb on - strand, within Synpcc7942_0652at 647.547 kb on - strand, within Synpcc7942_0652at 647.547 kb on - strand, within Synpcc7942_0652at 647.557 kb on + strand, within Synpcc7942_0652at 647.562 kb on + strand, within Synpcc7942_0652at 647.564 kb on - strand, within Synpcc7942_0652at 647.567 kb on + strand, within Synpcc7942_0652at 647.587 kb on + strand, within Synpcc7942_0652at 647.605 kb on - strand, within Synpcc7942_0652at 647.605 kb on - strand, within Synpcc7942_0652at 647.643 kb on - strand, within Synpcc7942_0652at 647.650 kb on + strand, within Synpcc7942_0652at 647.658 kb on - strand, within Synpcc7942_0652at 647.670 kb on + strand, within Synpcc7942_0652at 647.703 kb on - strand, within Synpcc7942_0652at 647.724 kb on - strand, within Synpcc7942_0652at 647.762 kb on - strand, within Synpcc7942_0652at 647.789 kb on - strand, within Synpcc7942_0652at 647.796 kb on + strand, within Synpcc7942_0652at 647.841 kb on - strand, within Synpcc7942_0652at 647.841 kb on - strand, within Synpcc7942_0652at 647.848 kb on - strand, within Synpcc7942_0652at 647.913 kb on + strandat 647.921 kb on - strand, within Synpcc7942_0652at 647.927 kb on - strand, within Synpcc7942_0652at 647.929 kb on - strand, within Synpcc7942_0652at 647.934 kb on + strand, within Synpcc7942_0652at 647.964 kb on + strand, within Synpcc7942_0652at 647.964 kb on + strand, within Synpcc7942_0652at 647.975 kb on + strand, within Synpcc7942_0652at 647.985 kb on - strand, within Synpcc7942_0652at 648.030 kb on + strand, within Synpcc7942_0652at 648.043 kb on - strand, within Synpcc7942_0652at 648.045 kb on + strand, within Synpcc7942_0652at 648.050 kb on - strand, within Synpcc7942_0652at 648.111 kb on - strand, within Synpcc7942_0652at 648.111 kb on - strand, within Synpcc7942_0652at 648.142 kb on + strand, within Synpcc7942_0652at 648.142 kb on + strand, within Synpcc7942_0652at 648.150 kb on + strand, within Synpcc7942_0652at 648.155 kb on + strand, within Synpcc7942_0652at 648.158 kb on - strand, within Synpcc7942_0652at 648.158 kb on - strand, within Synpcc7942_0652at 648.160 kb on + strand, within Synpcc7942_0652at 648.168 kb on - strand, within Synpcc7942_0652at 648.187 kb on + strand, within Synpcc7942_0652at 648.187 kb on + strand, within Synpcc7942_0652at 648.281 kb on + strandat 648.283 kb on - strand, within Synpcc7942_0652at 648.297 kb on + strand, within Synpcc7942_0652at 648.357 kb on + strand, within Synpcc7942_0652at 648.392 kb on + strand, within Synpcc7942_0652at 648.450 kb on + strand, within Synpcc7942_0652at 648.450 kb on + strand, within Synpcc7942_0652at 648.450 kb on + strand, within Synpcc7942_0652at 648.450 kb on + strand, within Synpcc7942_0652at 648.450 kb on + strand, within Synpcc7942_0652at 648.450 kb on + strand, within Synpcc7942_0652at 648.450 kb on + strand, within Synpcc7942_0652at 648.450 kb on + strand, within Synpcc7942_0652at 648.458 kb on - strand, within Synpcc7942_0652at 648.458 kb on - strandat 648.458 kb on - strand, within Synpcc7942_0652at 648.458 kb on - strand, within Synpcc7942_0652at 648.459 kb on - strand, within Synpcc7942_0652at 648.490 kb on + strand, within Synpcc7942_0652at 648.504 kb on + strand, within Synpcc7942_0652at 648.517 kb on - strand, within Synpcc7942_0652at 648.529 kb on - strand, within Synpcc7942_0652at 648.567 kb on + strandat 648.608 kb on + strandat 648.611 kb on + strandat 648.638 kb on + strandat 648.647 kb on + strandat 648.648 kb on + strandat 648.663 kb on - strandat 648.680 kb on + strandat 648.681 kb on + strandat 648.693 kb on + strandat 648.693 kb on + strandat 648.693 kb on + strandat 648.696 kb on - strandat 648.701 kb on - strandat 648.701 kb on - strandat 648.701 kb on - strandat 648.723 kb on + strandat 648.724 kb on - strandat 648.728 kb on + strandat 648.728 kb on + strandat 648.736 kb on - strandat 648.741 kb on - strandat 648.741 kb on - strandat 648.746 kb on - strandat 648.751 kb on - strandat 649.400 kb on + strandat 649.403 kb on + strandat 649.441 kb on + strandat 649.442 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
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647,193 - -0.2
647,194 + -2.3
647,201 - +1.9
647,251 - -0.5
647,253 + +1.2
647,290 + Synpcc7942_0652 0.10 +0.0
647,291 + Synpcc7942_0652 0.11 -0.5
647,327 - Synpcc7942_0652 0.13 +0.5
647,328 + Synpcc7942_0652 0.13 -0.2
647,384 - Synpcc7942_0652 0.16 +1.2
647,410 + Synpcc7942_0652 0.18 +1.0
647,418 - Synpcc7942_0652 0.18 +0.9
647,426 - Synpcc7942_0652 0.19 +1.1
647,428 - Synpcc7942_0652 0.19 +1.2
647,440 + Synpcc7942_0652 0.20 +1.7
647,445 - -0.1
647,464 - Synpcc7942_0652 0.21 -0.0
647,537 + Synpcc7942_0652 0.26 +0.2
647,537 + Synpcc7942_0652 0.26 +1.2
647,539 + Synpcc7942_0652 0.26 +0.3
647,539 + Synpcc7942_0652 0.26 +0.2
647,539 + Synpcc7942_0652 0.26 +0.3
647,545 - Synpcc7942_0652 0.26 -3.1
647,545 - Synpcc7942_0652 0.26 -0.9
647,545 - Synpcc7942_0652 0.26 -2.0
647,545 - Synpcc7942_0652 0.26 +1.1
647,545 - Synpcc7942_0652 0.26 +0.5
647,547 - Synpcc7942_0652 0.27 +1.3
647,547 - Synpcc7942_0652 0.27 +1.5
647,547 - Synpcc7942_0652 0.27 +1.2
647,547 - Synpcc7942_0652 0.27 +1.2
647,557 + Synpcc7942_0652 0.27 +1.4
647,562 + Synpcc7942_0652 0.28 -0.9
647,564 - Synpcc7942_0652 0.28 -0.1
647,567 + Synpcc7942_0652 0.28 +1.0
647,587 + Synpcc7942_0652 0.29 +1.6
647,605 - Synpcc7942_0652 0.30 +0.1
647,605 - Synpcc7942_0652 0.30 +0.6
647,643 - Synpcc7942_0652 0.33 +0.6
647,650 + Synpcc7942_0652 0.33 +1.3
647,658 - Synpcc7942_0652 0.34 -0.7
647,670 + Synpcc7942_0652 0.34 +0.9
647,703 - Synpcc7942_0652 0.36 +0.1
647,724 - Synpcc7942_0652 0.38 -0.4
647,762 - Synpcc7942_0652 0.40 -0.7
647,789 - Synpcc7942_0652 0.42 +1.7
647,796 + Synpcc7942_0652 0.42 +0.1
647,841 - Synpcc7942_0652 0.45 +0.7
647,841 - Synpcc7942_0652 0.45 -0.3
647,848 - Synpcc7942_0652 0.46 -0.3
647,913 + +1.9
647,921 - Synpcc7942_0652 0.50 -0.3
647,927 - Synpcc7942_0652 0.51 +2.3
647,929 - Synpcc7942_0652 0.51 -0.2
647,934 + Synpcc7942_0652 0.51 +0.6
647,964 + Synpcc7942_0652 0.53 +2.9
647,964 + Synpcc7942_0652 0.53 +0.2
647,975 + Synpcc7942_0652 0.54 +0.9
647,985 - Synpcc7942_0652 0.54 -0.2
648,030 + Synpcc7942_0652 0.57 -2.1
648,043 - Synpcc7942_0652 0.58 +0.1
648,045 + Synpcc7942_0652 0.58 +0.2
648,050 - Synpcc7942_0652 0.58 +1.8
648,111 - Synpcc7942_0652 0.62 -1.7
648,111 - Synpcc7942_0652 0.62 +0.1
648,142 + Synpcc7942_0652 0.64 -0.3
648,142 + Synpcc7942_0652 0.64 +0.4
648,150 + Synpcc7942_0652 0.65 +1.8
648,155 + Synpcc7942_0652 0.65 -0.7
648,158 - Synpcc7942_0652 0.65 -2.9
648,158 - Synpcc7942_0652 0.65 +2.1
648,160 + Synpcc7942_0652 0.65 +0.2
648,168 - Synpcc7942_0652 0.66 +0.0
648,187 + Synpcc7942_0652 0.67 +0.8
648,187 + Synpcc7942_0652 0.67 -0.1
648,281 + +1.9
648,283 - Synpcc7942_0652 0.73 -1.1
648,297 + Synpcc7942_0652 0.74 +1.3
648,357 + Synpcc7942_0652 0.78 -0.7
648,392 + Synpcc7942_0652 0.80 -1.4
648,450 + Synpcc7942_0652 0.83 -0.5
648,450 + Synpcc7942_0652 0.83 +1.0
648,450 + Synpcc7942_0652 0.83 +0.7
648,450 + Synpcc7942_0652 0.83 +1.0
648,450 + Synpcc7942_0652 0.83 -0.0
648,450 + Synpcc7942_0652 0.83 -1.1
648,450 + Synpcc7942_0652 0.83 +2.5
648,450 + Synpcc7942_0652 0.83 +0.4
648,458 - Synpcc7942_0652 0.84 -0.4
648,458 - -1.4
648,458 - Synpcc7942_0652 0.84 -0.1
648,458 - Synpcc7942_0652 0.84 -2.4
648,459 - Synpcc7942_0652 0.84 +0.5
648,490 + Synpcc7942_0652 0.86 +1.9
648,504 + Synpcc7942_0652 0.87 -0.7
648,517 - Synpcc7942_0652 0.88 -0.6
648,529 - Synpcc7942_0652 0.88 +0.1
648,567 + +0.6
648,608 + -0.5
648,611 + +1.2
648,638 + +0.5
648,647 + +1.6
648,648 + +0.8
648,663 - +0.5
648,680 + +0.0
648,681 + +1.1
648,693 + +0.3
648,693 + +1.3
648,693 + +0.2
648,696 - +1.2
648,701 - +0.9
648,701 - +2.0
648,701 - +1.3
648,723 + -0.7
648,724 - -0.1
648,728 + +0.3
648,728 + +0.5
648,736 - +1.0
648,741 - -0.2
648,741 - +0.8
648,746 - -0.1
648,751 - +2.0
649,400 + +0.7
649,403 + +0.6
649,441 + +0.9
649,442 - +0.4

Or see this region's nucleotide sequence