Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0547

Experiment: D-Cycloserine 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnha4 and Synpcc7942_0547 are separated by 33 nucleotidesSynpcc7942_0547 and Synpcc7942_0548 are separated by 56 nucleotides Synpcc7942_0546: nha4 - Na+/H+ antiporter, at 527,876 to 530,023 nha4 Synpcc7942_0547: Synpcc7942_0547 - hypothetical protein, at 530,057 to 530,566 _0547 Synpcc7942_0548: Synpcc7942_0548 - hypothetical protein, at 530,623 to 531,783 _0548 Position (kb) 530 531Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 529.092 kb on + strand, within nha4at 529.101 kb on - strand, within nha4at 529.128 kb on + strand, within nha4at 529.138 kb on + strand, within nha4at 529.138 kb on + strand, within nha4at 529.166 kb on - strand, within nha4at 529.174 kb on - strand, within nha4at 529.207 kb on + strand, within nha4at 529.221 kb on + strand, within nha4at 529.221 kb on + strand, within nha4at 529.221 kb on + strand, within nha4at 529.278 kb on - strand, within nha4at 529.294 kb on - strand, within nha4at 529.317 kb on - strand, within nha4at 529.342 kb on - strand, within nha4at 529.394 kb on - strand, within nha4at 529.410 kb on + strand, within nha4at 529.433 kb on - strand, within nha4at 529.453 kb on + strand, within nha4at 529.456 kb on - strand, within nha4at 529.471 kb on - strand, within nha4at 529.522 kb on + strand, within nha4at 529.522 kb on + strand, within nha4at 529.522 kb on + strand, within nha4at 529.545 kb on - strand, within nha4at 529.590 kb on - strand, within nha4at 529.612 kb on - strand, within nha4at 529.665 kb on + strand, within nha4at 529.685 kb on - strand, within nha4at 529.729 kb on - strand, within nha4at 529.739 kb on - strand, within nha4at 529.739 kb on - strand, within nha4at 529.764 kb on + strand, within nha4at 529.772 kb on - strand, within nha4at 529.787 kb on - strand, within nha4at 529.797 kb on + strand, within nha4at 529.797 kb on + strand, within nha4at 529.814 kb on + strandat 529.814 kb on + strandat 529.841 kb on + strandat 529.861 kb on + strandat 529.866 kb on + strandat 529.866 kb on + strandat 529.872 kb on - strandat 529.872 kb on - strandat 529.876 kb on + strandat 529.925 kb on + strandat 529.941 kb on - strandat 529.948 kb on + strandat 529.966 kb on - strandat 530.178 kb on + strand, within Synpcc7942_0547at 530.246 kb on + strand, within Synpcc7942_0547at 530.255 kb on + strand, within Synpcc7942_0547at 530.261 kb on + strand, within Synpcc7942_0547at 530.299 kb on - strand, within Synpcc7942_0547at 530.332 kb on + strand, within Synpcc7942_0547at 530.391 kb on + strand, within Synpcc7942_0547at 530.415 kb on - strand, within Synpcc7942_0547at 530.550 kb on + strandat 530.558 kb on - strandat 530.588 kb on - strandat 530.588 kb on - strandat 530.588 kb on - strandat 530.605 kb on - strandat 530.613 kb on - strandat 530.621 kb on + strandat 530.629 kb on - strandat 530.629 kb on - strandat 530.802 kb on - strand, within Synpcc7942_0548at 530.952 kb on + strand, within Synpcc7942_0548at 531.069 kb on - strand, within Synpcc7942_0548at 531.138 kb on + strand, within Synpcc7942_0548at 531.215 kb on + strand, within Synpcc7942_0548at 531.223 kb on - strand, within Synpcc7942_0548at 531.223 kb on - strand, within Synpcc7942_0548at 531.223 kb on - strand, within Synpcc7942_0548at 531.263 kb on + strand, within Synpcc7942_0548at 531.284 kb on + strand, within Synpcc7942_0548at 531.292 kb on - strand, within Synpcc7942_0548at 531.329 kb on - strand, within Synpcc7942_0548at 531.367 kb on - strand, within Synpcc7942_0548at 531.407 kb on + strand, within Synpcc7942_0548at 531.442 kb on + strand, within Synpcc7942_0548at 531.454 kb on + strand, within Synpcc7942_0548at 531.456 kb on + strand, within Synpcc7942_0548at 531.462 kb on - strand, within Synpcc7942_0548at 531.464 kb on - strand, within Synpcc7942_0548at 531.466 kb on + strand, within Synpcc7942_0548at 531.469 kb on - strand, within Synpcc7942_0548at 531.475 kb on - strand, within Synpcc7942_0548at 531.563 kb on + strand, within Synpcc7942_0548at 531.563 kb on + strand, within Synpcc7942_0548

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
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529,092 + nha4 Synpcc7942_0546 0.57 +0.3
529,101 - nha4 Synpcc7942_0546 0.57 +1.5
529,128 + nha4 Synpcc7942_0546 0.58 +0.4
529,138 + nha4 Synpcc7942_0546 0.59 +0.5
529,138 + nha4 Synpcc7942_0546 0.59 +0.5
529,166 - nha4 Synpcc7942_0546 0.60 +0.9
529,174 - nha4 Synpcc7942_0546 0.60 -2.1
529,207 + nha4 Synpcc7942_0546 0.62 +0.7
529,221 + nha4 Synpcc7942_0546 0.63 -0.9
529,221 + nha4 Synpcc7942_0546 0.63 -0.9
529,221 + nha4 Synpcc7942_0546 0.63 -0.4
529,278 - nha4 Synpcc7942_0546 0.65 -0.2
529,294 - nha4 Synpcc7942_0546 0.66 -2.1
529,317 - nha4 Synpcc7942_0546 0.67 -0.1
529,342 - nha4 Synpcc7942_0546 0.68 -1.1
529,394 - nha4 Synpcc7942_0546 0.71 +0.2
529,410 + nha4 Synpcc7942_0546 0.71 +0.4
529,433 - nha4 Synpcc7942_0546 0.72 -1.7
529,453 + nha4 Synpcc7942_0546 0.73 +0.7
529,456 - nha4 Synpcc7942_0546 0.74 +0.9
529,471 - nha4 Synpcc7942_0546 0.74 +0.4
529,522 + nha4 Synpcc7942_0546 0.77 -0.2
529,522 + nha4 Synpcc7942_0546 0.77 -0.5
529,522 + nha4 Synpcc7942_0546 0.77 -1.1
529,545 - nha4 Synpcc7942_0546 0.78 -1.1
529,590 - nha4 Synpcc7942_0546 0.80 +0.0
529,612 - nha4 Synpcc7942_0546 0.81 -0.4
529,665 + nha4 Synpcc7942_0546 0.83 -0.5
529,685 - nha4 Synpcc7942_0546 0.84 +0.1
529,729 - nha4 Synpcc7942_0546 0.86 +0.5
529,739 - nha4 Synpcc7942_0546 0.87 -1.7
529,739 - nha4 Synpcc7942_0546 0.87 +0.1
529,764 + nha4 Synpcc7942_0546 0.88 -1.1
529,772 - nha4 Synpcc7942_0546 0.88 -0.3
529,787 - nha4 Synpcc7942_0546 0.89 -0.3
529,797 + nha4 Synpcc7942_0546 0.89 +0.5
529,797 + nha4 Synpcc7942_0546 0.89 -0.0
529,814 + -0.5
529,814 + +1.1
529,841 + +0.3
529,861 + +0.2
529,866 + +1.9
529,866 + -1.5
529,872 - +0.2
529,872 - +0.6
529,876 + -1.7
529,925 + -0.3
529,941 - +0.0
529,948 + +0.3
529,966 - -1.1
530,178 + Synpcc7942_0547 0.24 +0.8
530,246 + Synpcc7942_0547 0.37 -0.4
530,255 + Synpcc7942_0547 0.39 +1.1
530,261 + Synpcc7942_0547 0.40 -0.1
530,299 - Synpcc7942_0547 0.47 -0.1
530,332 + Synpcc7942_0547 0.54 +0.0
530,391 + Synpcc7942_0547 0.65 +0.7
530,415 - Synpcc7942_0547 0.70 +0.3
530,550 + -2.9
530,558 - +0.8
530,588 - +0.1
530,588 - -0.1
530,588 - +0.2
530,605 - -1.5
530,613 - -0.3
530,621 + +1.1
530,629 - -0.3
530,629 - +0.9
530,802 - Synpcc7942_0548 0.15 -3.1
530,952 + Synpcc7942_0548 0.28 -3.1
531,069 - Synpcc7942_0548 0.38 -1.4
531,138 + Synpcc7942_0548 0.44 -2.0
531,215 + Synpcc7942_0548 0.51 -0.3
531,223 - Synpcc7942_0548 0.52 -0.1
531,223 - Synpcc7942_0548 0.52 -1.1
531,223 - Synpcc7942_0548 0.52 -0.5
531,263 + Synpcc7942_0548 0.55 +0.7
531,284 + Synpcc7942_0548 0.57 +0.1
531,292 - Synpcc7942_0548 0.58 -1.1
531,329 - Synpcc7942_0548 0.61 -0.1
531,367 - Synpcc7942_0548 0.64 -2.1
531,407 + Synpcc7942_0548 0.68 +0.3
531,442 + Synpcc7942_0548 0.71 -1.1
531,454 + Synpcc7942_0548 0.72 -2.1
531,456 + Synpcc7942_0548 0.72 -1.4
531,462 - Synpcc7942_0548 0.72 -0.1
531,464 - Synpcc7942_0548 0.72 -0.1
531,466 + Synpcc7942_0548 0.73 -1.7
531,469 - Synpcc7942_0548 0.73 +1.3
531,475 - Synpcc7942_0548 0.73 +0.9
531,563 + Synpcc7942_0548 0.81 -0.5
531,563 + Synpcc7942_0548 0.81 -2.1

Or see this region's nucleotide sequence