Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0531 and Synpcc7942_0532 are separated by 237 nucleotides Synpcc7942_0532 and Synpcc7942_0533 overlap by 4 nucleotides Synpcc7942_0533 and glmS are separated by 15 nucleotides
Synpcc7942_0531: Synpcc7942_0531 - TPR repeat, at 515,313 to 516,176
_0531
Synpcc7942_0532: Synpcc7942_0532 - hypothetical protein, at 516,414 to 516,767
_0532
Synpcc7942_0533: Synpcc7942_0533 - hypothetical protein, at 516,764 to 517,000
_0533
Synpcc7942_0534: glmS - D-fructose-6-phosphate amidotransferase, at 517,016 to 518,941
glmS
Position (kb) 516
517 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 515.438 kb on - strand, within Synpcc7942_0531 at 515.438 kb on - strand, within Synpcc7942_0531 at 515.682 kb on + strand, within Synpcc7942_0531 at 516.124 kb on - strand at 516.136 kb on - strand at 516.141 kb on - strand at 516.235 kb on + strand at 516.285 kb on - strand at 516.289 kb on - strand at 516.348 kb on - strand at 516.358 kb on - strand at 516.487 kb on + strand, within Synpcc7942_0532 at 516.551 kb on - strand, within Synpcc7942_0532 at 516.619 kb on + strand, within Synpcc7942_0532 at 516.634 kb on + strand, within Synpcc7942_0532 at 516.653 kb on + strand, within Synpcc7942_0532 at 516.666 kb on + strand, within Synpcc7942_0532 at 517.004 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 515,438 - Synpcc7942_0531 0.14 -0.1 515,438 - Synpcc7942_0531 0.14 -2.7 515,682 + Synpcc7942_0531 0.43 -1.1 516,124 - -2.3 516,136 - -2.1 516,141 - -0.1 516,235 + +0.0 516,285 - +0.5 516,289 - -0.5 516,348 - +3.3 516,358 - +0.7 516,487 + Synpcc7942_0532 0.21 -2.1 516,551 - Synpcc7942_0532 0.39 +0.8 516,619 + Synpcc7942_0532 0.58 +1.6 516,634 + Synpcc7942_0532 0.62 -1.1 516,653 + Synpcc7942_0532 0.68 +0.7 516,666 + Synpcc7942_0532 0.71 +0.0 517,004 + +3.1
Or see this region's nucleotide sequence