Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0515

Experiment: D-Cycloserine 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0513 and Synpcc7942_0514 are separated by 29 nucleotidesSynpcc7942_0514 and Synpcc7942_0515 are separated by 37 nucleotidesSynpcc7942_0515 and ctpB overlap by 4 nucleotides Synpcc7942_0513: Synpcc7942_0513 - ATPase, at 498,901 to 499,653 _0513 Synpcc7942_0514: Synpcc7942_0514 - hypothetical protein, at 499,683 to 500,105 _0514 Synpcc7942_0515: Synpcc7942_0515 - hypothetical protein, at 500,143 to 500,565 _0515 Synpcc7942_0516: ctpB - C-terminal processing peptidase-2. Serine peptidase. MEROPS family S41A, at 500,562 to 501,884 ctpB Position (kb) 500 501Strain fitness (log2 ratio) -2 -1 0 1 2at 499.688 kb on - strandat 499.688 kb on - strandat 499.699 kb on - strandat 499.704 kb on - strandat 499.707 kb on + strandat 499.707 kb on - strandat 500.099 kb on + strandat 500.142 kb on + strandat 500.142 kb on + strandat 500.142 kb on + strandat 500.142 kb on + strandat 500.150 kb on - strandat 500.150 kb on - strandat 500.150 kb on - strandat 500.150 kb on - strandat 500.157 kb on + strandat 500.157 kb on + strandat 500.163 kb on - strandat 500.165 kb on - strandat 500.169 kb on + strandat 500.169 kb on + strandat 500.184 kb on + strandat 500.184 kb on + strandat 500.189 kb on + strand, within Synpcc7942_0515at 500.192 kb on - strand, within Synpcc7942_0515at 500.193 kb on - strand, within Synpcc7942_0515at 500.208 kb on + strand, within Synpcc7942_0515at 500.208 kb on + strand, within Synpcc7942_0515at 500.216 kb on - strand, within Synpcc7942_0515at 500.216 kb on - strand, within Synpcc7942_0515at 500.248 kb on + strand, within Synpcc7942_0515at 500.250 kb on + strand, within Synpcc7942_0515at 500.254 kb on + strand, within Synpcc7942_0515at 500.262 kb on - strand, within Synpcc7942_0515at 500.262 kb on - strand, within Synpcc7942_0515at 500.262 kb on - strand, within Synpcc7942_0515at 500.274 kb on + strand, within Synpcc7942_0515at 500.284 kb on - strand, within Synpcc7942_0515at 500.318 kb on - strand, within Synpcc7942_0515at 500.358 kb on - strand, within Synpcc7942_0515at 500.367 kb on + strand, within Synpcc7942_0515at 500.395 kb on - strand, within Synpcc7942_0515at 500.395 kb on - strand, within Synpcc7942_0515at 500.482 kb on - strand, within Synpcc7942_0515at 500.495 kb on + strand, within Synpcc7942_0515at 500.511 kb on + strand, within Synpcc7942_0515at 500.518 kb on - strand, within Synpcc7942_0515at 500.519 kb on - strand, within Synpcc7942_0515at 500.520 kb on + strand, within Synpcc7942_0515at 500.520 kb on + strand, within Synpcc7942_0515at 500.556 kb on - strandat 500.561 kb on - strandat 500.590 kb on - strandat 500.616 kb on + strandat 500.630 kb on - strandat 500.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
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499,688 - +0.5
499,688 - +0.7
499,699 - -0.1
499,704 - -0.1
499,707 + -1.7
499,707 - -0.7
500,099 + -0.3
500,142 + +0.7
500,142 + +0.1
500,142 + +0.3
500,142 + -0.3
500,150 - -2.2
500,150 - +1.2
500,150 - +1.6
500,150 - -1.3
500,157 + +0.6
500,157 + +2.5
500,163 - +1.2
500,165 - -0.4
500,169 + -1.7
500,169 + -0.4
500,184 + -1.3
500,184 + +0.7
500,189 + Synpcc7942_0515 0.11 -1.3
500,192 - Synpcc7942_0515 0.12 -0.3
500,193 - Synpcc7942_0515 0.12 -0.1
500,208 + Synpcc7942_0515 0.15 +0.9
500,208 + Synpcc7942_0515 0.15 +0.2
500,216 - Synpcc7942_0515 0.17 -0.0
500,216 - Synpcc7942_0515 0.17 +1.8
500,248 + Synpcc7942_0515 0.25 +1.3
500,250 + Synpcc7942_0515 0.25 -0.7
500,254 + Synpcc7942_0515 0.26 +1.4
500,262 - Synpcc7942_0515 0.28 -0.1
500,262 - Synpcc7942_0515 0.28 -0.2
500,262 - Synpcc7942_0515 0.28 +0.6
500,274 + Synpcc7942_0515 0.31 +0.5
500,284 - Synpcc7942_0515 0.33 +0.3
500,318 - Synpcc7942_0515 0.41 +1.2
500,358 - Synpcc7942_0515 0.51 +0.6
500,367 + Synpcc7942_0515 0.53 +1.5
500,395 - Synpcc7942_0515 0.60 +0.4
500,395 - Synpcc7942_0515 0.60 +1.5
500,482 - Synpcc7942_0515 0.80 +1.2
500,495 + Synpcc7942_0515 0.83 +0.4
500,511 + Synpcc7942_0515 0.87 +0.2
500,518 - Synpcc7942_0515 0.89 -0.7
500,519 - Synpcc7942_0515 0.89 +1.1
500,520 + Synpcc7942_0515 0.89 +0.8
500,520 + Synpcc7942_0515 0.89 +1.3
500,556 - -0.6
500,561 - -0.4
500,590 - +1.5
500,616 + +0.1
500,630 - -0.6
500,647 - +1.5

Or see this region's nucleotide sequence