Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0486

Experiment: D-Cycloserine 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgpmB and pyrC are separated by 6 nucleotidespyrC and lepB overlap by 45 nucleotideslepB and Synpcc7942_0488 are separated by 143 nucleotides Synpcc7942_0485: gpmB - phosphoglycerate mutase, at 470,975 to 472,312 gpmB Synpcc7942_0486: pyrC - dihydroorotase, at 472,319 to 473,554 pyrC Synpcc7942_0487: lepB - thylakoidal processing peptidase. Serine peptidase. MEROPS family S26A, at 473,510 to 474,172 lepB Synpcc7942_0488: Synpcc7942_0488 - dihydroorotase, at 474,316 to 475,644 _0488 Position (kb) 472 473 474Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 472.306 kb on + strandat 472.314 kb on - strandat 472.316 kb on + strandat 472.316 kb on + strandat 473.533 kb on + strandat 473.549 kb on + strandat 473.549 kb on + strandat 473.549 kb on + strandat 473.600 kb on - strand, within lepBat 474.176 kb on + strandat 474.222 kb on - strandat 474.277 kb on + strandat 474.283 kb on + strandat 474.294 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
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472,306 + +0.3
472,314 - -0.1
472,316 + +1.5
472,316 + -0.6
473,533 + +0.2
473,549 + +0.9
473,549 + +0.3
473,549 + -1.1
473,600 - lepB Synpcc7942_0487 0.14 -3.8
474,176 + -2.1
474,222 - -0.4
474,277 + -1.7
474,283 + -1.1
474,294 - -0.9

Or see this region's nucleotide sequence