Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0453 and cobS overlap by 20 nucleotides cobS and tgt are separated by 28 nucleotides tgt and psbK are separated by 53 nucleotides psbK and Synpcc7942_0457 are separated by 215 nucleotides
Synpcc7942_0453: Synpcc7942_0453 - GAF sensor signal transduction histidine kinase, at 442,022 to 443,236
_0453
Synpcc7942_0454: cobS - cobalamin synthase, at 443,217 to 443,972
cobS
Synpcc7942_0455: tgt - queuine tRNA-ribosyltransferase, at 444,001 to 445,155
tgt
Synpcc7942_0456: psbK - photosystem II reaction center protein PsbK precursor, at 445,209 to 445,346
psbK
Synpcc7942_0457: Synpcc7942_0457 - hypothetical protein, at 445,562 to 446,179
_0457
Position (kb) 444
445
446 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 443.209 kb on + strand at 443.215 kb on + strand at 443.215 kb on + strand at 443.953 kb on + strand at 443.953 kb on + strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.981 kb on + strand at 444.004 kb on + strand at 444.017 kb on - strand at 444.042 kb on + strand at 444.042 kb on - strand at 444.070 kb on + strand at 444.073 kb on - strand at 444.073 kb on - strand at 444.096 kb on - strand at 444.107 kb on + strand at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.215 kb on - strand, within tgt at 444.215 kb on - strand, within tgt at 444.215 kb on - strand, within tgt at 444.221 kb on - strand, within tgt at 444.238 kb on + strand, within tgt at 444.246 kb on + strand, within tgt at 444.246 kb on - strand, within tgt at 444.255 kb on - strand, within tgt at 444.274 kb on - strand, within tgt at 444.293 kb on + strand, within tgt at 444.301 kb on - strand, within tgt at 444.334 kb on - strand, within tgt at 444.345 kb on + strand, within tgt at 444.358 kb on - strand, within tgt at 444.358 kb on - strand, within tgt at 444.360 kb on - strand, within tgt at 444.382 kb on + strand, within tgt at 444.382 kb on + strand, within tgt at 444.390 kb on - strand, within tgt at 444.464 kb on - strand, within tgt at 444.483 kb on + strand, within tgt at 444.503 kb on - strand, within tgt at 444.533 kb on - strand, within tgt at 444.576 kb on - strand, within tgt at 444.595 kb on + strand, within tgt at 444.595 kb on + strand, within tgt at 444.595 kb on + strand, within tgt at 444.595 kb on + strand, within tgt at 444.603 kb on - strand, within tgt at 444.603 kb on - strand, within tgt at 444.603 kb on - strand, within tgt at 444.603 kb on - strand, within tgt at 444.738 kb on + strand, within tgt at 444.749 kb on + strand, within tgt at 444.749 kb on + strand, within tgt at 444.749 kb on + strand, within tgt at 444.757 kb on - strand, within tgt at 444.773 kb on + strand, within tgt at 444.796 kb on + strand, within tgt at 444.858 kb on + strand, within tgt at 444.858 kb on + strand, within tgt at 444.871 kb on - strand, within tgt at 444.902 kb on + strand, within tgt at 444.948 kb on + strand, within tgt at 445.014 kb on + strand, within tgt at 445.022 kb on - strand, within tgt at 445.092 kb on - strand at 445.116 kb on + strand at 445.129 kb on - strand at 445.129 kb on - strand at 445.148 kb on - strand at 445.208 kb on + strand at 445.218 kb on + strand at 445.293 kb on - strand, within psbK at 445.349 kb on - strand at 445.356 kb on - strand at 445.364 kb on - strand at 445.395 kb on + strand at 445.446 kb on - strand at 445.573 kb on - strand at 445.583 kb on + strand at 445.593 kb on + strand at 445.601 kb on - strand at 445.641 kb on + strand, within Synpcc7942_0457 at 445.670 kb on + strand, within Synpcc7942_0457 at 445.670 kb on + strand at 445.670 kb on + strand, within Synpcc7942_0457 at 445.670 kb on + strand, within Synpcc7942_0457 at 445.675 kb on + strand at 445.678 kb on - strand, within Synpcc7942_0457 at 445.678 kb on - strand, within Synpcc7942_0457 at 445.678 kb on - strand, within Synpcc7942_0457 at 445.678 kb on - strand, within Synpcc7942_0457 at 445.681 kb on + strand, within Synpcc7942_0457 at 445.686 kb on + strand, within Synpcc7942_0457 at 445.689 kb on - strand, within Synpcc7942_0457 at 445.691 kb on - strand, within Synpcc7942_0457 at 445.755 kb on + strand, within Synpcc7942_0457 at 445.763 kb on - strand, within Synpcc7942_0457 at 445.771 kb on + strand, within Synpcc7942_0457 at 445.783 kb on + strand, within Synpcc7942_0457 at 445.790 kb on + strand, within Synpcc7942_0457 at 445.798 kb on - strand, within Synpcc7942_0457 at 445.799 kb on - strand, within Synpcc7942_0457 at 445.806 kb on + strand, within Synpcc7942_0457 at 445.814 kb on - strand, within Synpcc7942_0457 at 445.832 kb on + strand, within Synpcc7942_0457 at 445.874 kb on - strand, within Synpcc7942_0457 at 445.897 kb on + strand, within Synpcc7942_0457 at 445.900 kb on - strand, within Synpcc7942_0457 at 445.933 kb on + strand, within Synpcc7942_0457 at 445.933 kb on + strand, within Synpcc7942_0457 at 445.933 kb on + strand, within Synpcc7942_0457 at 445.938 kb on + strand, within Synpcc7942_0457 at 445.941 kb on - strand, within Synpcc7942_0457 at 445.951 kb on - strand, within Synpcc7942_0457 at 445.988 kb on - strand, within Synpcc7942_0457 at 446.071 kb on + strand, within Synpcc7942_0457 at 446.120 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 443,209 + -0.5 443,215 + +0.3 443,215 + -0.3 443,953 + -2.9 443,953 + -0.5 443,961 - -0.1 443,961 - -1.6 443,961 - -0.5 443,961 - -0.6 443,961 - +0.4 443,961 - -1.6 443,961 - +1.8 443,961 - -1.5 443,961 - +2.9 443,981 + -0.2 444,004 + -0.6 444,017 - +1.4 444,042 + -0.3 444,042 - -0.5 444,070 + -2.5 444,073 - -4.1 444,073 - -2.6 444,096 - -3.9 444,107 + -2.9 444,207 + tgt Synpcc7942_0455 0.18 -4.9 444,207 + tgt Synpcc7942_0455 0.18 -2.2 444,207 + tgt Synpcc7942_0455 0.18 -2.8 444,207 + tgt Synpcc7942_0455 0.18 -3.9 444,215 - tgt Synpcc7942_0455 0.19 -3.8 444,215 - tgt Synpcc7942_0455 0.19 -6.0 444,215 - tgt Synpcc7942_0455 0.19 -2.6 444,221 - tgt Synpcc7942_0455 0.19 -6.3 444,238 + tgt Synpcc7942_0455 0.21 -3.4 444,246 + tgt Synpcc7942_0455 0.21 -3.9 444,246 - tgt Synpcc7942_0455 0.21 -3.6 444,255 - tgt Synpcc7942_0455 0.22 -3.5 444,274 - tgt Synpcc7942_0455 0.24 -4.1 444,293 + tgt Synpcc7942_0455 0.25 -3.9 444,301 - tgt Synpcc7942_0455 0.26 -2.6 444,334 - tgt Synpcc7942_0455 0.29 -4.7 444,345 + tgt Synpcc7942_0455 0.30 -2.4 444,358 - tgt Synpcc7942_0455 0.31 -2.9 444,358 - tgt Synpcc7942_0455 0.31 -2.5 444,360 - tgt Synpcc7942_0455 0.31 -2.9 444,382 + tgt Synpcc7942_0455 0.33 -3.4 444,382 + tgt Synpcc7942_0455 0.33 -3.5 444,390 - tgt Synpcc7942_0455 0.34 -4.0 444,464 - tgt Synpcc7942_0455 0.40 -2.9 444,483 + tgt Synpcc7942_0455 0.42 -5.0 444,503 - tgt Synpcc7942_0455 0.43 -0.6 444,533 - tgt Synpcc7942_0455 0.46 -2.1 444,576 - tgt Synpcc7942_0455 0.50 -3.4 444,595 + tgt Synpcc7942_0455 0.51 -2.9 444,595 + tgt Synpcc7942_0455 0.51 -3.6 444,595 + tgt Synpcc7942_0455 0.51 -3.1 444,595 + tgt Synpcc7942_0455 0.51 -4.9 444,603 - tgt Synpcc7942_0455 0.52 -2.1 444,603 - tgt Synpcc7942_0455 0.52 -2.9 444,603 - tgt Synpcc7942_0455 0.52 -3.8 444,603 - tgt Synpcc7942_0455 0.52 -3.1 444,738 + tgt Synpcc7942_0455 0.64 -4.8 444,749 + tgt Synpcc7942_0455 0.65 -3.6 444,749 + tgt Synpcc7942_0455 0.65 -3.6 444,749 + tgt Synpcc7942_0455 0.65 -3.4 444,757 - tgt Synpcc7942_0455 0.65 -3.1 444,773 + tgt Synpcc7942_0455 0.67 -3.9 444,796 + tgt Synpcc7942_0455 0.69 -3.9 444,858 + tgt Synpcc7942_0455 0.74 -3.1 444,858 + tgt Synpcc7942_0455 0.74 -4.2 444,871 - tgt Synpcc7942_0455 0.75 -5.7 444,902 + tgt Synpcc7942_0455 0.78 -6.8 444,948 + tgt Synpcc7942_0455 0.82 -4.8 445,014 + tgt Synpcc7942_0455 0.88 -4.4 445,022 - tgt Synpcc7942_0455 0.88 -2.9 445,092 - -2.6 445,116 + +1.5 445,129 - +0.3 445,129 - +0.1 445,148 - -1.1 445,208 + -2.1 445,218 + -2.1 445,293 - psbK Synpcc7942_0456 0.61 -2.1 445,349 - -2.1 445,356 - +0.2 445,364 - +0.9 445,395 + -0.4 445,446 - -1.4 445,573 - -0.3 445,583 + +0.7 445,593 + +0.4 445,601 - +0.4 445,641 + Synpcc7942_0457 0.13 +0.4 445,670 + Synpcc7942_0457 0.17 -1.1 445,670 + -0.1 445,670 + Synpcc7942_0457 0.17 +0.7 445,670 + Synpcc7942_0457 0.17 +0.3 445,675 + -0.1 445,678 - Synpcc7942_0457 0.19 -0.5 445,678 - Synpcc7942_0457 0.19 -0.7 445,678 - Synpcc7942_0457 0.19 -0.1 445,678 - Synpcc7942_0457 0.19 -0.8 445,681 + Synpcc7942_0457 0.19 +0.2 445,686 + Synpcc7942_0457 0.20 -0.3 445,689 - Synpcc7942_0457 0.21 -1.1 445,691 - Synpcc7942_0457 0.21 -2.4 445,755 + Synpcc7942_0457 0.31 +0.8 445,763 - Synpcc7942_0457 0.33 +1.3 445,771 + Synpcc7942_0457 0.34 -0.1 445,783 + Synpcc7942_0457 0.36 +1.2 445,790 + Synpcc7942_0457 0.37 +2.9 445,798 - Synpcc7942_0457 0.38 +0.5 445,799 - Synpcc7942_0457 0.38 -0.1 445,806 + Synpcc7942_0457 0.39 +1.3 445,814 - Synpcc7942_0457 0.41 +1.5 445,832 + Synpcc7942_0457 0.44 +1.7 445,874 - Synpcc7942_0457 0.50 -0.8 445,897 + Synpcc7942_0457 0.54 +1.2 445,900 - Synpcc7942_0457 0.55 -1.4 445,933 + Synpcc7942_0457 0.60 +0.8 445,933 + Synpcc7942_0457 0.60 +0.3 445,933 + Synpcc7942_0457 0.60 +0.5 445,938 + Synpcc7942_0457 0.61 -0.9 445,941 - Synpcc7942_0457 0.61 +3.3 445,951 - Synpcc7942_0457 0.63 +3.5 445,988 - Synpcc7942_0457 0.69 -0.6 446,071 + Synpcc7942_0457 0.82 +1.0 446,120 + +0.8
Or see this region's nucleotide sequence