Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metY and metA are separated by 48 nucleotides metA and Synpcc7942_0372 are separated by 37 nucleotides Synpcc7942_0372 and Synpcc7942_0373 overlap by 116 nucleotides
Synpcc7942_0370: metY - O-acetylhomoserine/O-acetylserine sulfhydrylase, at 363,763 to 365,067
metY
Synpcc7942_0371: metA - homoserine O-succinyltransferase, at 365,116 to 366,015
metA
Synpcc7942_0372: Synpcc7942_0372 - hypothetical protein, at 366,053 to 366,853
_0372
Synpcc7942_0373: Synpcc7942_0373 - hypothetical protein, at 366,738 to 368,024
_0373
Position (kb) 366
367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 365.071 kb on + strand at 365.084 kb on - strand at 365.099 kb on + strand at 365.114 kb on - strand at 365.187 kb on - strand at 365.248 kb on - strand, within metA at 365.257 kb on - strand, within metA at 365.287 kb on + strand, within metA at 365.297 kb on - strand, within metA at 365.317 kb on + strand, within metA at 365.360 kb on - strand, within metA at 365.387 kb on - strand, within metA at 365.428 kb on - strand at 365.477 kb on + strand, within metA at 365.485 kb on - strand, within metA at 365.507 kb on + strand, within metA at 365.764 kb on - strand, within metA at 365.773 kb on + strand, within metA at 365.805 kb on - strand, within metA at 365.819 kb on - strand, within metA at 365.827 kb on - strand, within metA at 365.945 kb on + strand at 365.954 kb on + strand at 366.175 kb on - strand, within Synpcc7942_0372 at 366.186 kb on - strand, within Synpcc7942_0372 at 366.218 kb on - strand, within Synpcc7942_0372 at 366.233 kb on - strand, within Synpcc7942_0372 at 366.246 kb on - strand, within Synpcc7942_0372 at 366.280 kb on + strand, within Synpcc7942_0372 at 366.340 kb on - strand, within Synpcc7942_0372 at 366.403 kb on - strand, within Synpcc7942_0372 at 366.420 kb on - strand, within Synpcc7942_0372 at 366.432 kb on - strand, within Synpcc7942_0372 at 366.452 kb on + strand, within Synpcc7942_0372 at 366.490 kb on - strand, within Synpcc7942_0372 at 366.518 kb on - strand, within Synpcc7942_0372 at 366.526 kb on - strand, within Synpcc7942_0372 at 366.529 kb on + strand, within Synpcc7942_0372 at 366.537 kb on - strand, within Synpcc7942_0372 at 366.641 kb on + strand, within Synpcc7942_0372 at 366.641 kb on + strand, within Synpcc7942_0372 at 366.641 kb on + strand, within Synpcc7942_0372 at 366.649 kb on - strand, within Synpcc7942_0372 at 366.649 kb on - strand, within Synpcc7942_0372 at 366.649 kb on - strand, within Synpcc7942_0372 at 366.649 kb on - strand, within Synpcc7942_0372 at 366.649 kb on - strand, within Synpcc7942_0372 at 366.684 kb on + strand, within Synpcc7942_0372 at 366.685 kb on + strand, within Synpcc7942_0372 at 366.720 kb on + strand, within Synpcc7942_0372 at 366.720 kb on + strand, within Synpcc7942_0372 at 366.730 kb on + strand, within Synpcc7942_0372 at 366.742 kb on + strand at 366.742 kb on + strand at 366.742 kb on + strand at 366.742 kb on + strand at 366.750 kb on - strand at 366.776 kb on + strand at 366.788 kb on + strand at 366.789 kb on + strand at 366.799 kb on - strand at 366.820 kb on + strand at 366.847 kb on + strand at 366.847 kb on + strand at 366.847 kb on + strand at 367.009 kb on - strand, within Synpcc7942_0373 at 367.037 kb on + strand, within Synpcc7942_0373 at 367.138 kb on - strand, within Synpcc7942_0373 at 367.151 kb on + strand, within Synpcc7942_0373 at 367.266 kb on + strand, within Synpcc7942_0373 at 367.266 kb on + strand, within Synpcc7942_0373 at 367.372 kb on + strand, within Synpcc7942_0373 at 367.383 kb on + strand, within Synpcc7942_0373 at 367.473 kb on - strand, within Synpcc7942_0373 at 367.478 kb on + strand, within Synpcc7942_0373 at 367.485 kb on + strand, within Synpcc7942_0373 at 367.485 kb on + strand, within Synpcc7942_0373 at 367.485 kb on + strand, within Synpcc7942_0373 at 367.485 kb on + strand, within Synpcc7942_0373 at 367.493 kb on - strand, within Synpcc7942_0373 at 367.496 kb on + strand, within Synpcc7942_0373 at 367.555 kb on + strand, within Synpcc7942_0373 at 367.557 kb on - strand, within Synpcc7942_0373 at 367.557 kb on - strand, within Synpcc7942_0373 at 367.563 kb on - strand, within Synpcc7942_0373 at 367.578 kb on + strand, within Synpcc7942_0373 at 367.619 kb on + strand, within Synpcc7942_0373 at 367.635 kb on - strand, within Synpcc7942_0373 at 367.695 kb on + strand, within Synpcc7942_0373 at 367.720 kb on - strand, within Synpcc7942_0373 at 367.720 kb on - strand, within Synpcc7942_0373 at 367.725 kb on + strand, within Synpcc7942_0373 at 367.810 kb on - strand, within Synpcc7942_0373
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 365,071 + +1.3 365,084 - +0.7 365,099 + +0.9 365,114 - -0.9 365,187 - +0.4 365,248 - metA Synpcc7942_0371 0.15 +1.7 365,257 - metA Synpcc7942_0371 0.16 +0.7 365,287 + metA Synpcc7942_0371 0.19 -1.3 365,297 - metA Synpcc7942_0371 0.20 +0.9 365,317 + metA Synpcc7942_0371 0.22 +1.1 365,360 - metA Synpcc7942_0371 0.27 -0.3 365,387 - metA Synpcc7942_0371 0.30 -0.8 365,428 - +0.9 365,477 + metA Synpcc7942_0371 0.40 +0.7 365,485 - metA Synpcc7942_0371 0.41 -1.7 365,507 + metA Synpcc7942_0371 0.43 +2.6 365,764 - metA Synpcc7942_0371 0.72 +1.3 365,773 + metA Synpcc7942_0371 0.73 +0.9 365,805 - metA Synpcc7942_0371 0.77 +3.1 365,819 - metA Synpcc7942_0371 0.78 +1.6 365,827 - metA Synpcc7942_0371 0.79 +0.2 365,945 + +1.5 365,954 + +3.0 366,175 - Synpcc7942_0372 0.15 +1.7 366,186 - Synpcc7942_0372 0.17 +0.4 366,218 - Synpcc7942_0372 0.21 -0.7 366,233 - Synpcc7942_0372 0.22 +0.9 366,246 - Synpcc7942_0372 0.24 +0.3 366,280 + Synpcc7942_0372 0.28 +0.3 366,340 - Synpcc7942_0372 0.36 +0.1 366,403 - Synpcc7942_0372 0.44 -1.2 366,420 - Synpcc7942_0372 0.46 +1.4 366,432 - Synpcc7942_0372 0.47 +0.9 366,452 + Synpcc7942_0372 0.50 -1.0 366,490 - Synpcc7942_0372 0.55 +1.4 366,518 - Synpcc7942_0372 0.58 -0.1 366,526 - Synpcc7942_0372 0.59 +0.6 366,529 + Synpcc7942_0372 0.59 +0.5 366,537 - Synpcc7942_0372 0.60 -0.5 366,641 + Synpcc7942_0372 0.73 +0.2 366,641 + Synpcc7942_0372 0.73 -0.5 366,641 + Synpcc7942_0372 0.73 -0.1 366,649 - Synpcc7942_0372 0.74 +0.1 366,649 - Synpcc7942_0372 0.74 -1.2 366,649 - Synpcc7942_0372 0.74 -0.9 366,649 - Synpcc7942_0372 0.74 +0.7 366,649 - Synpcc7942_0372 0.74 +1.1 366,684 + Synpcc7942_0372 0.79 +0.9 366,685 + Synpcc7942_0372 0.79 +0.5 366,720 + Synpcc7942_0372 0.83 +1.1 366,720 + Synpcc7942_0372 0.83 +1.0 366,730 + Synpcc7942_0372 0.85 -0.8 366,742 + -1.7 366,742 + -0.1 366,742 + +0.1 366,742 + -2.0 366,750 - +1.0 366,776 + +0.9 366,788 + -0.3 366,789 + -1.1 366,799 - +2.2 366,820 + +0.4 366,847 + -0.2 366,847 + +1.1 366,847 + -0.9 367,009 - Synpcc7942_0373 0.21 +0.3 367,037 + Synpcc7942_0373 0.23 -0.4 367,138 - Synpcc7942_0373 0.31 -0.6 367,151 + Synpcc7942_0373 0.32 +0.4 367,266 + Synpcc7942_0373 0.41 +1.3 367,266 + Synpcc7942_0373 0.41 +0.9 367,372 + Synpcc7942_0373 0.49 -0.1 367,383 + Synpcc7942_0373 0.50 +0.2 367,473 - Synpcc7942_0373 0.57 -0.8 367,478 + Synpcc7942_0373 0.57 +1.4 367,485 + Synpcc7942_0373 0.58 +0.2 367,485 + Synpcc7942_0373 0.58 +2.6 367,485 + Synpcc7942_0373 0.58 +1.4 367,485 + Synpcc7942_0373 0.58 -1.5 367,493 - Synpcc7942_0373 0.59 +0.3 367,496 + Synpcc7942_0373 0.59 -1.1 367,555 + Synpcc7942_0373 0.63 -0.1 367,557 - Synpcc7942_0373 0.64 +0.5 367,557 - Synpcc7942_0373 0.64 -0.3 367,563 - Synpcc7942_0373 0.64 +0.1 367,578 + Synpcc7942_0373 0.65 +0.6 367,619 + Synpcc7942_0373 0.68 -0.7 367,635 - Synpcc7942_0373 0.70 -0.3 367,695 + Synpcc7942_0373 0.74 +0.3 367,720 - Synpcc7942_0373 0.76 -3.4 367,720 - Synpcc7942_0373 0.76 +0.4 367,725 + Synpcc7942_0373 0.77 +0.3 367,810 - Synpcc7942_0373 0.83 -1.7
Or see this region's nucleotide sequence