Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aoxB and metY are separated by 161 nucleotides metY and metA are separated by 48 nucleotides metA and Synpcc7942_0372 are separated by 37 nucleotides
Synpcc7942_0369: aoxB - putative flavin-containing monoamine oxidase, at 362,147 to 363,601
aoxB
Synpcc7942_0370: metY - O-acetylhomoserine/O-acetylserine sulfhydrylase, at 363,763 to 365,067
metY
Synpcc7942_0371: metA - homoserine O-succinyltransferase, at 365,116 to 366,015
metA
Synpcc7942_0372: Synpcc7942_0372 - hypothetical protein, at 366,053 to 366,853
_0372
Position (kb) 363
364
365
366 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 362.841 kb on + strand, within aoxB at 362.841 kb on + strand, within aoxB at 362.841 kb on + strand, within aoxB at 362.841 kb on - strand, within aoxB at 362.849 kb on - strand, within aoxB at 362.850 kb on - strand, within aoxB at 362.944 kb on - strand, within aoxB at 362.975 kb on - strand, within aoxB at 362.983 kb on + strand, within aoxB at 363.016 kb on - strand, within aoxB at 363.029 kb on - strand, within aoxB at 363.051 kb on + strand, within aoxB at 363.063 kb on + strand, within aoxB at 363.095 kb on + strand, within aoxB at 363.098 kb on - strand, within aoxB at 363.098 kb on - strand, within aoxB at 363.107 kb on + strand, within aoxB at 363.107 kb on + strand, within aoxB at 363.107 kb on + strand, within aoxB at 363.107 kb on + strand, within aoxB at 363.107 kb on + strand, within aoxB at 363.107 kb on + strand, within aoxB at 363.107 kb on + strand, within aoxB at 363.113 kb on + strand, within aoxB at 363.115 kb on - strand, within aoxB at 363.115 kb on - strand, within aoxB at 363.115 kb on - strand, within aoxB at 363.115 kb on - strand, within aoxB at 363.115 kb on - strand, within aoxB at 363.137 kb on + strand, within aoxB at 363.137 kb on + strand, within aoxB at 363.169 kb on + strand, within aoxB at 363.170 kb on - strand, within aoxB at 363.174 kb on + strand, within aoxB at 363.177 kb on - strand at 363.177 kb on - strand, within aoxB at 363.180 kb on - strand, within aoxB at 363.182 kb on - strand, within aoxB at 363.228 kb on - strand, within aoxB at 363.228 kb on - strand, within aoxB at 363.228 kb on - strand, within aoxB at 363.230 kb on - strand, within aoxB at 363.240 kb on + strand, within aoxB at 363.272 kb on - strand, within aoxB at 363.274 kb on + strand, within aoxB at 363.293 kb on + strand, within aoxB at 363.300 kb on - strand, within aoxB at 363.306 kb on - strand, within aoxB at 363.329 kb on - strand, within aoxB at 363.375 kb on - strand, within aoxB at 363.397 kb on - strand, within aoxB at 363.417 kb on - strand, within aoxB at 363.417 kb on - strand, within aoxB at 363.417 kb on - strand, within aoxB at 363.421 kb on + strand, within aoxB at 363.423 kb on + strand, within aoxB at 363.429 kb on - strand, within aoxB at 363.429 kb on - strand, within aoxB at 363.434 kb on + strand, within aoxB at 363.446 kb on - strand, within aoxB at 363.456 kb on - strand at 363.471 kb on - strand at 363.494 kb on + strand at 363.494 kb on + strand at 363.502 kb on - strand at 363.502 kb on - strand at 363.502 kb on - strand at 363.502 kb on - strand at 363.502 kb on - strand at 363.502 kb on - strand at 363.523 kb on - strand at 363.545 kb on - strand at 363.548 kb on + strand at 363.593 kb on - strand at 363.593 kb on - strand at 363.596 kb on + strand at 363.601 kb on + strand at 363.608 kb on + strand at 363.619 kb on - strand at 363.652 kb on + strand at 363.669 kb on - strand at 363.683 kb on + strand at 363.687 kb on + strand at 363.687 kb on + strand at 363.695 kb on - strand at 363.707 kb on + strand at 363.742 kb on + strand at 363.750 kb on - strand at 363.782 kb on + strand at 363.782 kb on + strand at 363.790 kb on - strand at 363.790 kb on - strand at 363.799 kb on + strand at 363.799 kb on + strand at 363.799 kb on + strand at 363.807 kb on - strand at 363.807 kb on - strand at 363.807 kb on - strand at 363.843 kb on - strand at 363.863 kb on + strand at 363.863 kb on + strand at 363.864 kb on - strand at 363.882 kb on - strand at 363.919 kb on + strand, within metY at 363.919 kb on + strand, within metY at 363.919 kb on + strand, within metY at 363.919 kb on + strand, within metY at 363.919 kb on + strand, within metY at 363.919 kb on + strand at 363.927 kb on - strand, within metY at 363.927 kb on - strand, within metY at 363.927 kb on - strand, within metY at 363.939 kb on + strand, within metY at 363.961 kb on - strand, within metY at 363.971 kb on - strand, within metY at 363.971 kb on - strand, within metY at 363.973 kb on + strand, within metY at 363.978 kb on + strand, within metY at 363.981 kb on - strand, within metY at 363.984 kb on - strand, within metY at 363.984 kb on - strand, within metY at 363.997 kb on + strand, within metY at 364.005 kb on - strand, within metY at 364.007 kb on + strand, within metY at 364.007 kb on + strand, within metY at 364.007 kb on + strand, within metY at 364.015 kb on - strand, within metY at 364.015 kb on - strand, within metY at 364.015 kb on - strand, within metY at 364.020 kb on - strand, within metY at 364.057 kb on + strand, within metY at 364.057 kb on + strand, within metY at 364.068 kb on + strand, within metY at 364.076 kb on + strand, within metY at 364.076 kb on + strand, within metY at 364.084 kb on - strand, within metY at 364.103 kb on + strand, within metY at 364.106 kb on - strand, within metY at 364.112 kb on + strand, within metY at 364.117 kb on + strand, within metY at 364.133 kb on + strand, within metY at 364.206 kb on + strand, within metY at 364.206 kb on + strand at 364.214 kb on - strand, within metY at 364.214 kb on - strand, within metY at 364.215 kb on - strand at 364.231 kb on + strand, within metY at 364.238 kb on - strand, within metY at 364.243 kb on + strand, within metY at 364.244 kb on - strand, within metY at 364.283 kb on + strand, within metY at 364.300 kb on + strand, within metY at 364.324 kb on + strand, within metY at 364.329 kb on + strand, within metY at 364.337 kb on + strand, within metY at 364.337 kb on - strand, within metY at 364.337 kb on - strand, within metY at 364.345 kb on - strand, within metY at 364.363 kb on + strand, within metY at 364.363 kb on + strand, within metY at 364.417 kb on - strand, within metY at 364.472 kb on + strand, within metY at 364.480 kb on - strand, within metY at 364.538 kb on + strand, within metY at 364.546 kb on - strand, within metY at 364.546 kb on - strand at 364.548 kb on + strand, within metY at 364.573 kb on + strand, within metY at 364.581 kb on - strand, within metY at 364.600 kb on - strand, within metY at 364.624 kb on + strand, within metY at 364.631 kb on - strand, within metY at 364.632 kb on - strand, within metY at 364.650 kb on + strand, within metY at 364.650 kb on - strand, within metY at 364.705 kb on - strand, within metY at 364.733 kb on + strand, within metY at 364.733 kb on + strand, within metY at 364.756 kb on + strand, within metY at 364.756 kb on + strand, within metY at 364.764 kb on - strand, within metY at 364.764 kb on - strand, within metY at 364.788 kb on - strand, within metY at 364.788 kb on - strand, within metY at 364.801 kb on + strand, within metY at 364.809 kb on - strand, within metY at 364.809 kb on - strand, within metY at 364.809 kb on - strand, within metY at 364.809 kb on - strand, within metY at 364.831 kb on - strand, within metY at 364.858 kb on + strand, within metY at 364.928 kb on + strand, within metY at 364.936 kb on - strand, within metY at 364.936 kb on - strand, within metY at 364.959 kb on - strand at 364.966 kb on + strand at 364.971 kb on - strand at 364.989 kb on + strand at 364.999 kb on + strand at 365.008 kb on + strand at 365.008 kb on - strand at 365.009 kb on + strand at 365.013 kb on + strand at 365.019 kb on + strand at 365.030 kb on + strand at 365.041 kb on + strand at 365.071 kb on + strand at 365.084 kb on - strand at 365.099 kb on + strand at 365.114 kb on - strand at 365.187 kb on - strand at 365.248 kb on - strand, within metA at 365.257 kb on - strand, within metA at 365.287 kb on + strand, within metA at 365.297 kb on - strand, within metA at 365.317 kb on + strand, within metA at 365.360 kb on - strand, within metA at 365.387 kb on - strand, within metA at 365.428 kb on - strand at 365.477 kb on + strand, within metA at 365.485 kb on - strand, within metA at 365.507 kb on + strand, within metA at 365.764 kb on - strand, within metA at 365.773 kb on + strand, within metA at 365.805 kb on - strand, within metA at 365.819 kb on - strand, within metA at 365.827 kb on - strand, within metA at 365.945 kb on + strand at 365.954 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 362,841 + aoxB Synpcc7942_0369 0.48 +0.7 362,841 + aoxB Synpcc7942_0369 0.48 +2.2 362,841 + aoxB Synpcc7942_0369 0.48 -0.3 362,841 - aoxB Synpcc7942_0369 0.48 -1.0 362,849 - aoxB Synpcc7942_0369 0.48 -0.1 362,850 - aoxB Synpcc7942_0369 0.48 +0.2 362,944 - aoxB Synpcc7942_0369 0.55 +0.2 362,975 - aoxB Synpcc7942_0369 0.57 -0.8 362,983 + aoxB Synpcc7942_0369 0.57 +0.8 363,016 - aoxB Synpcc7942_0369 0.60 +0.0 363,029 - aoxB Synpcc7942_0369 0.61 -1.4 363,051 + aoxB Synpcc7942_0369 0.62 -0.1 363,063 + aoxB Synpcc7942_0369 0.63 -1.1 363,095 + aoxB Synpcc7942_0369 0.65 +0.9 363,098 - aoxB Synpcc7942_0369 0.65 +0.3 363,098 - aoxB Synpcc7942_0369 0.65 +0.7 363,107 + aoxB Synpcc7942_0369 0.66 +1.1 363,107 + aoxB Synpcc7942_0369 0.66 +0.5 363,107 + aoxB Synpcc7942_0369 0.66 -2.1 363,107 + aoxB Synpcc7942_0369 0.66 +1.0 363,107 + aoxB Synpcc7942_0369 0.66 -1.1 363,107 + aoxB Synpcc7942_0369 0.66 +1.5 363,107 + aoxB Synpcc7942_0369 0.66 -0.2 363,113 + aoxB Synpcc7942_0369 0.66 +0.3 363,115 - aoxB Synpcc7942_0369 0.67 -0.1 363,115 - aoxB Synpcc7942_0369 0.67 -0.6 363,115 - aoxB Synpcc7942_0369 0.67 -0.4 363,115 - aoxB Synpcc7942_0369 0.67 -0.7 363,115 - aoxB Synpcc7942_0369 0.67 -0.1 363,137 + aoxB Synpcc7942_0369 0.68 +1.0 363,137 + aoxB Synpcc7942_0369 0.68 +1.2 363,169 + aoxB Synpcc7942_0369 0.70 -1.2 363,170 - aoxB Synpcc7942_0369 0.70 +2.8 363,174 + aoxB Synpcc7942_0369 0.71 +1.3 363,177 - -0.1 363,177 - aoxB Synpcc7942_0369 0.71 +0.7 363,180 - aoxB Synpcc7942_0369 0.71 -0.6 363,182 - aoxB Synpcc7942_0369 0.71 +0.6 363,228 - aoxB Synpcc7942_0369 0.74 -0.1 363,228 - aoxB Synpcc7942_0369 0.74 -0.1 363,228 - aoxB Synpcc7942_0369 0.74 -0.5 363,230 - aoxB Synpcc7942_0369 0.74 -1.1 363,240 + aoxB Synpcc7942_0369 0.75 +1.8 363,272 - aoxB Synpcc7942_0369 0.77 +0.3 363,274 + aoxB Synpcc7942_0369 0.77 +1.3 363,293 + aoxB Synpcc7942_0369 0.79 +0.2 363,300 - aoxB Synpcc7942_0369 0.79 -0.3 363,306 - aoxB Synpcc7942_0369 0.80 +0.9 363,329 - aoxB Synpcc7942_0369 0.81 -0.1 363,375 - aoxB Synpcc7942_0369 0.84 +0.7 363,397 - aoxB Synpcc7942_0369 0.86 -0.9 363,417 - aoxB Synpcc7942_0369 0.87 -0.5 363,417 - aoxB Synpcc7942_0369 0.87 +0.1 363,417 - aoxB Synpcc7942_0369 0.87 +1.0 363,421 + aoxB Synpcc7942_0369 0.88 -5.0 363,423 + aoxB Synpcc7942_0369 0.88 +0.6 363,429 - aoxB Synpcc7942_0369 0.88 -1.1 363,429 - aoxB Synpcc7942_0369 0.88 -0.5 363,434 + aoxB Synpcc7942_0369 0.88 +1.2 363,446 - aoxB Synpcc7942_0369 0.89 +1.7 363,456 - -2.7 363,471 - +0.5 363,494 + -0.6 363,494 + +0.7 363,502 - -2.1 363,502 - -0.6 363,502 - +0.4 363,502 - +0.5 363,502 - -0.4 363,502 - -2.1 363,523 - -0.8 363,545 - -0.1 363,548 + +1.3 363,593 - +0.9 363,593 - -0.4 363,596 + -0.6 363,601 + -1.8 363,608 + -2.1 363,619 - -0.9 363,652 + +1.5 363,669 - -0.7 363,683 + -0.1 363,687 + +1.7 363,687 + +0.9 363,695 - -0.5 363,707 + +0.9 363,742 + +1.2 363,750 - +0.1 363,782 + +1.1 363,782 + +1.6 363,790 - +2.5 363,790 - +0.9 363,799 + -0.1 363,799 + -0.2 363,799 + +0.2 363,807 - +1.1 363,807 - +1.4 363,807 - +0.8 363,843 - -0.5 363,863 + +1.8 363,863 + +1.6 363,864 - +2.2 363,882 - +0.3 363,919 + metY Synpcc7942_0370 0.12 -0.5 363,919 + metY Synpcc7942_0370 0.12 +1.4 363,919 + metY Synpcc7942_0370 0.12 +1.0 363,919 + metY Synpcc7942_0370 0.12 +1.7 363,919 + metY Synpcc7942_0370 0.12 +2.9 363,919 + +2.5 363,927 - metY Synpcc7942_0370 0.13 +1.2 363,927 - metY Synpcc7942_0370 0.13 +0.9 363,927 - metY Synpcc7942_0370 0.13 +0.4 363,939 + metY Synpcc7942_0370 0.13 +0.8 363,961 - metY Synpcc7942_0370 0.15 +1.8 363,971 - metY Synpcc7942_0370 0.16 -1.0 363,971 - metY Synpcc7942_0370 0.16 +0.2 363,973 + metY Synpcc7942_0370 0.16 +0.7 363,978 + metY Synpcc7942_0370 0.16 +1.6 363,981 - metY Synpcc7942_0370 0.17 +0.5 363,984 - metY Synpcc7942_0370 0.17 +2.6 363,984 - metY Synpcc7942_0370 0.17 +0.9 363,997 + metY Synpcc7942_0370 0.18 +1.4 364,005 - metY Synpcc7942_0370 0.19 +0.9 364,007 + metY Synpcc7942_0370 0.19 +0.2 364,007 + metY Synpcc7942_0370 0.19 -2.4 364,007 + metY Synpcc7942_0370 0.19 -0.1 364,015 - metY Synpcc7942_0370 0.19 +1.6 364,015 - metY Synpcc7942_0370 0.19 +0.9 364,015 - metY Synpcc7942_0370 0.19 -2.1 364,020 - metY Synpcc7942_0370 0.20 -1.1 364,057 + metY Synpcc7942_0370 0.23 -0.4 364,057 + metY Synpcc7942_0370 0.23 -0.3 364,068 + metY Synpcc7942_0370 0.23 +4.1 364,076 + metY Synpcc7942_0370 0.24 +0.7 364,076 + metY Synpcc7942_0370 0.24 -1.9 364,084 - metY Synpcc7942_0370 0.25 +1.6 364,103 + metY Synpcc7942_0370 0.26 +1.3 364,106 - metY Synpcc7942_0370 0.26 +0.4 364,112 + metY Synpcc7942_0370 0.27 -0.3 364,117 + metY Synpcc7942_0370 0.27 +0.7 364,133 + metY Synpcc7942_0370 0.28 +0.6 364,206 + metY Synpcc7942_0370 0.34 +0.2 364,206 + -0.7 364,214 - metY Synpcc7942_0370 0.35 +0.5 364,214 - metY Synpcc7942_0370 0.35 +0.7 364,215 - +0.3 364,231 + metY Synpcc7942_0370 0.36 -0.6 364,238 - metY Synpcc7942_0370 0.36 -0.1 364,243 + metY Synpcc7942_0370 0.37 +0.9 364,244 - metY Synpcc7942_0370 0.37 +1.4 364,283 + metY Synpcc7942_0370 0.40 +1.1 364,300 + metY Synpcc7942_0370 0.41 +0.3 364,324 + metY Synpcc7942_0370 0.43 +0.7 364,329 + metY Synpcc7942_0370 0.43 +2.2 364,337 + metY Synpcc7942_0370 0.44 +0.3 364,337 - metY Synpcc7942_0370 0.44 +0.9 364,337 - metY Synpcc7942_0370 0.44 +1.1 364,345 - metY Synpcc7942_0370 0.45 +1.3 364,363 + metY Synpcc7942_0370 0.46 +1.2 364,363 + metY Synpcc7942_0370 0.46 +0.8 364,417 - metY Synpcc7942_0370 0.50 +1.0 364,472 + metY Synpcc7942_0370 0.54 +0.1 364,480 - metY Synpcc7942_0370 0.55 +2.2 364,538 + metY Synpcc7942_0370 0.59 +1.6 364,546 - metY Synpcc7942_0370 0.60 -0.4 364,546 - +1.5 364,548 + metY Synpcc7942_0370 0.60 +0.3 364,573 + metY Synpcc7942_0370 0.62 +1.1 364,581 - metY Synpcc7942_0370 0.63 +1.1 364,600 - metY Synpcc7942_0370 0.64 -1.3 364,624 + metY Synpcc7942_0370 0.66 -0.1 364,631 - metY Synpcc7942_0370 0.67 +1.7 364,632 - metY Synpcc7942_0370 0.67 -0.9 364,650 + metY Synpcc7942_0370 0.68 +1.8 364,650 - metY Synpcc7942_0370 0.68 -2.4 364,705 - metY Synpcc7942_0370 0.72 +0.6 364,733 + metY Synpcc7942_0370 0.74 +1.2 364,733 + metY Synpcc7942_0370 0.74 +2.1 364,756 + metY Synpcc7942_0370 0.76 +0.5 364,756 + metY Synpcc7942_0370 0.76 +0.1 364,764 - metY Synpcc7942_0370 0.77 +2.4 364,764 - metY Synpcc7942_0370 0.77 -2.4 364,788 - metY Synpcc7942_0370 0.79 +1.1 364,788 - metY Synpcc7942_0370 0.79 +1.7 364,801 + metY Synpcc7942_0370 0.80 +1.3 364,809 - metY Synpcc7942_0370 0.80 -0.8 364,809 - metY Synpcc7942_0370 0.80 +0.4 364,809 - metY Synpcc7942_0370 0.80 +1.9 364,809 - metY Synpcc7942_0370 0.80 +0.3 364,831 - metY Synpcc7942_0370 0.82 +0.6 364,858 + metY Synpcc7942_0370 0.84 +0.6 364,928 + metY Synpcc7942_0370 0.89 +1.5 364,936 - metY Synpcc7942_0370 0.90 +0.5 364,936 - metY Synpcc7942_0370 0.90 -0.4 364,959 - +2.0 364,966 + +0.7 364,971 - +0.9 364,989 + +0.6 364,999 + +0.5 365,008 + +1.5 365,008 - +0.8 365,009 + -0.3 365,013 + -0.5 365,019 + -0.3 365,030 + +1.5 365,041 + +1.0 365,071 + +1.3 365,084 - +0.7 365,099 + +0.9 365,114 - -0.9 365,187 - +0.4 365,248 - metA Synpcc7942_0371 0.15 +1.7 365,257 - metA Synpcc7942_0371 0.16 +0.7 365,287 + metA Synpcc7942_0371 0.19 -1.3 365,297 - metA Synpcc7942_0371 0.20 +0.9 365,317 + metA Synpcc7942_0371 0.22 +1.1 365,360 - metA Synpcc7942_0371 0.27 -0.3 365,387 - metA Synpcc7942_0371 0.30 -0.8 365,428 - +0.9 365,477 + metA Synpcc7942_0371 0.40 +0.7 365,485 - metA Synpcc7942_0371 0.41 -1.7 365,507 + metA Synpcc7942_0371 0.43 +2.6 365,764 - metA Synpcc7942_0371 0.72 +1.3 365,773 + metA Synpcc7942_0371 0.73 +0.9 365,805 - metA Synpcc7942_0371 0.77 +3.1 365,819 - metA Synpcc7942_0371 0.78 +1.6 365,827 - metA Synpcc7942_0371 0.79 +0.2 365,945 + +1.5 365,954 + +3.0
Or see this region's nucleotide sequence