Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0363 and Synpcc7942_0364 are separated by 71 nucleotides Synpcc7942_0364 and Synpcc7942_0365 are separated by 259 nucleotides Synpcc7942_0365 and ltnT are separated by 243 nucleotides
Synpcc7942_0363: Synpcc7942_0363 - hypothetical protein, at 355,509 to 355,793
_0363
Synpcc7942_0364: Synpcc7942_0364 - hypothetical protein, at 355,865 to 356,416
_0364
Synpcc7942_0365: Synpcc7942_0365 - response regulator receiver domain protein (CheY-like), at 356,676 to 357,305
_0365
Synpcc7942_0366: ltnT - putative sulfate transporter, at 357,549 to 359,732
ltnT
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 355.704 kb on - strand, within Synpcc7942_0363 at 355.709 kb on - strand, within Synpcc7942_0363 at 355.719 kb on - strand, within Synpcc7942_0363 at 355.734 kb on - strand, within Synpcc7942_0363 at 355.762 kb on - strand, within Synpcc7942_0363 at 355.859 kb on - strand at 355.924 kb on - strand, within Synpcc7942_0364 at 355.942 kb on - strand, within Synpcc7942_0364 at 355.956 kb on + strand, within Synpcc7942_0364 at 355.962 kb on + strand, within Synpcc7942_0364 at 355.964 kb on - strand, within Synpcc7942_0364 at 355.970 kb on - strand, within Synpcc7942_0364 at 356.001 kb on + strand, within Synpcc7942_0364 at 356.022 kb on + strand, within Synpcc7942_0364 at 356.032 kb on - strand, within Synpcc7942_0364 at 356.049 kb on - strand, within Synpcc7942_0364 at 356.051 kb on - strand, within Synpcc7942_0364 at 356.085 kb on + strand at 356.085 kb on + strand, within Synpcc7942_0364 at 356.101 kb on + strand, within Synpcc7942_0364 at 356.104 kb on - strand, within Synpcc7942_0364 at 356.104 kb on - strand, within Synpcc7942_0364 at 356.104 kb on - strand, within Synpcc7942_0364 at 356.126 kb on - strand, within Synpcc7942_0364 at 356.128 kb on - strand, within Synpcc7942_0364 at 356.138 kb on - strand, within Synpcc7942_0364 at 356.142 kb on - strand, within Synpcc7942_0364 at 356.203 kb on - strand, within Synpcc7942_0364 at 356.205 kb on - strand, within Synpcc7942_0364 at 356.209 kb on - strand, within Synpcc7942_0364 at 356.213 kb on + strand, within Synpcc7942_0364 at 356.229 kb on + strand, within Synpcc7942_0364 at 356.229 kb on + strand, within Synpcc7942_0364 at 356.230 kb on + strand, within Synpcc7942_0364 at 356.237 kb on - strand, within Synpcc7942_0364 at 356.237 kb on - strand, within Synpcc7942_0364 at 356.245 kb on + strand, within Synpcc7942_0364 at 356.274 kb on - strand, within Synpcc7942_0364 at 356.281 kb on - strand, within Synpcc7942_0364 at 356.285 kb on + strand, within Synpcc7942_0364 at 356.287 kb on + strand, within Synpcc7942_0364 at 356.291 kb on - strand, within Synpcc7942_0364 at 356.293 kb on - strand, within Synpcc7942_0364 at 356.293 kb on - strand, within Synpcc7942_0364 at 356.293 kb on - strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.332 kb on + strand, within Synpcc7942_0364 at 356.335 kb on + strand, within Synpcc7942_0364 at 356.340 kb on - strand, within Synpcc7942_0364 at 356.340 kb on - strand, within Synpcc7942_0364 at 356.402 kb on - strand at 356.411 kb on + strand at 356.419 kb on - strand at 356.459 kb on - strand at 356.459 kb on - strand at 356.482 kb on - strand at 356.482 kb on - strand at 356.486 kb on + strand at 356.633 kb on + strand at 356.666 kb on + strand at 356.666 kb on + strand at 356.674 kb on - strand at 356.674 kb on - strand at 356.681 kb on - strand at 356.734 kb on - strand at 356.747 kb on - strand, within Synpcc7942_0365 at 356.764 kb on + strand, within Synpcc7942_0365 at 356.764 kb on + strand, within Synpcc7942_0365 at 356.774 kb on + strand, within Synpcc7942_0365 at 356.779 kb on + strand, within Synpcc7942_0365 at 356.794 kb on - strand at 356.799 kb on + strand, within Synpcc7942_0365 at 356.873 kb on + strand, within Synpcc7942_0365 at 356.883 kb on + strand, within Synpcc7942_0365 at 356.884 kb on + strand, within Synpcc7942_0365 at 356.892 kb on - strand, within Synpcc7942_0365 at 356.892 kb on - strand, within Synpcc7942_0365 at 357.001 kb on + strand, within Synpcc7942_0365 at 357.006 kb on - strand, within Synpcc7942_0365 at 357.008 kb on + strand, within Synpcc7942_0365 at 357.016 kb on - strand, within Synpcc7942_0365 at 357.040 kb on - strand, within Synpcc7942_0365 at 357.040 kb on - strand, within Synpcc7942_0365 at 357.043 kb on + strand, within Synpcc7942_0365 at 357.052 kb on - strand, within Synpcc7942_0365 at 357.083 kb on - strand, within Synpcc7942_0365 at 357.092 kb on - strand, within Synpcc7942_0365 at 357.111 kb on + strand at 357.119 kb on - strand, within Synpcc7942_0365 at 357.130 kb on + strand, within Synpcc7942_0365 at 357.132 kb on + strand, within Synpcc7942_0365 at 357.143 kb on + strand, within Synpcc7942_0365 at 357.225 kb on - strand, within Synpcc7942_0365 at 357.243 kb on + strand at 357.249 kb on + strand at 357.266 kb on + strand at 357.266 kb on + strand at 357.266 kb on + strand at 357.273 kb on + strand at 357.274 kb on - strand at 357.274 kb on - strand at 357.274 kb on - strand at 357.296 kb on + strand at 357.296 kb on + strand at 357.304 kb on - strand at 357.352 kb on - strand at 357.447 kb on + strand at 357.454 kb on + strand at 357.454 kb on + strand at 357.454 kb on + strand at 357.459 kb on + strand at 357.459 kb on + strand at 357.466 kb on + strand at 357.466 kb on + strand at 357.467 kb on - strand at 357.481 kb on - strand at 357.504 kb on + strand at 357.512 kb on - strand at 357.512 kb on - strand at 357.530 kb on + strand at 357.556 kb on + strand at 357.556 kb on + strand at 357.564 kb on - strand at 357.570 kb on - strand at 357.579 kb on + strand at 357.581 kb on + strand at 357.582 kb on - strand at 357.582 kb on - strand at 357.594 kb on - strand at 357.620 kb on + strand at 357.627 kb on + strand at 357.635 kb on - strand at 357.635 kb on - strand at 357.691 kb on - strand at 357.717 kb on + strand at 357.717 kb on + strand at 357.717 kb on + strand at 357.722 kb on - strand at 357.725 kb on - strand at 357.725 kb on - strand at 357.725 kb on - strand at 357.725 kb on - strand at 357.770 kb on + strand, within ltnT at 357.770 kb on + strand, within ltnT at 357.773 kb on - strand, within ltnT at 357.778 kb on - strand, within ltnT at 357.778 kb on - strand, within ltnT at 357.778 kb on - strand, within ltnT at 357.800 kb on + strand, within ltnT at 357.808 kb on - strand, within ltnT at 357.848 kb on + strand, within ltnT at 357.851 kb on - strand, within ltnT at 357.851 kb on - strand at 357.851 kb on - strand, within ltnT at 357.882 kb on + strand, within ltnT at 357.882 kb on - strand, within ltnT at 357.897 kb on + strand, within ltnT at 357.897 kb on + strand, within ltnT at 357.913 kb on + strand, within ltnT at 357.913 kb on + strand, within ltnT at 357.913 kb on + strand, within ltnT at 357.913 kb on + strand, within ltnT at 357.921 kb on - strand, within ltnT at 357.921 kb on - strand, within ltnT at 357.921 kb on - strand, within ltnT at 357.931 kb on + strand at 357.951 kb on - strand, within ltnT at 358.023 kb on - strand, within ltnT at 358.033 kb on + strand, within ltnT at 358.034 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.072 kb on + strand, within ltnT at 358.080 kb on - strand, within ltnT at 358.080 kb on - strand, within ltnT at 358.080 kb on - strand, within ltnT at 358.080 kb on - strand, within ltnT at 358.082 kb on + strand, within ltnT at 358.082 kb on + strand, within ltnT at 358.090 kb on - strand, within ltnT at 358.090 kb on - strand, within ltnT at 358.090 kb on - strand, within ltnT at 358.126 kb on + strand, within ltnT at 358.145 kb on + strand, within ltnT at 358.175 kb on + strand, within ltnT at 358.180 kb on + strand, within ltnT at 358.183 kb on - strand, within ltnT at 358.188 kb on - strand, within ltnT at 358.193 kb on - strand, within ltnT at 358.210 kb on + strand, within ltnT at 358.210 kb on + strand, within ltnT at 358.215 kb on + strand, within ltnT at 358.218 kb on - strand, within ltnT at 358.225 kb on + strand, within ltnT at 358.230 kb on + strand, within ltnT at 358.233 kb on - strand, within ltnT at 358.235 kb on + strand, within ltnT at 358.236 kb on + strand, within ltnT at 358.238 kb on - strand, within ltnT at 358.243 kb on + strand, within ltnT
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 355,704 - Synpcc7942_0363 0.68 +0.8 355,709 - Synpcc7942_0363 0.70 +1.1 355,719 - Synpcc7942_0363 0.74 +0.4 355,734 - Synpcc7942_0363 0.79 +0.5 355,762 - Synpcc7942_0363 0.89 +0.2 355,859 - +2.2 355,924 - Synpcc7942_0364 0.11 -0.3 355,942 - Synpcc7942_0364 0.14 +0.3 355,956 + Synpcc7942_0364 0.16 -0.3 355,962 + Synpcc7942_0364 0.18 +0.3 355,964 - Synpcc7942_0364 0.18 +1.2 355,970 - Synpcc7942_0364 0.19 +0.5 356,001 + Synpcc7942_0364 0.25 +0.1 356,022 + Synpcc7942_0364 0.28 -0.1 356,032 - Synpcc7942_0364 0.30 +0.1 356,049 - Synpcc7942_0364 0.33 -0.3 356,051 - Synpcc7942_0364 0.34 -1.1 356,085 + +0.9 356,085 + Synpcc7942_0364 0.40 -1.2 356,101 + Synpcc7942_0364 0.43 +0.8 356,104 - Synpcc7942_0364 0.43 +0.2 356,104 - Synpcc7942_0364 0.43 +0.9 356,104 - Synpcc7942_0364 0.43 -0.1 356,126 - Synpcc7942_0364 0.47 +1.3 356,128 - Synpcc7942_0364 0.48 -0.7 356,138 - Synpcc7942_0364 0.49 +0.3 356,142 - Synpcc7942_0364 0.50 +0.9 356,203 - Synpcc7942_0364 0.61 -2.4 356,205 - Synpcc7942_0364 0.62 +0.2 356,209 - Synpcc7942_0364 0.62 -0.2 356,213 + Synpcc7942_0364 0.63 +1.2 356,229 + Synpcc7942_0364 0.66 +0.9 356,229 + Synpcc7942_0364 0.66 +2.2 356,230 + Synpcc7942_0364 0.66 +0.0 356,237 - Synpcc7942_0364 0.67 -0.7 356,237 - Synpcc7942_0364 0.67 -2.1 356,245 + Synpcc7942_0364 0.69 +0.3 356,274 - Synpcc7942_0364 0.74 -1.7 356,281 - Synpcc7942_0364 0.75 -0.1 356,285 + Synpcc7942_0364 0.76 -1.2 356,287 + Synpcc7942_0364 0.76 +0.5 356,291 - Synpcc7942_0364 0.77 -0.3 356,293 - Synpcc7942_0364 0.78 -0.8 356,293 - Synpcc7942_0364 0.78 -0.3 356,293 - Synpcc7942_0364 0.78 -0.6 356,332 + Synpcc7942_0364 0.85 +2.1 356,332 + Synpcc7942_0364 0.85 -1.4 356,332 + Synpcc7942_0364 0.85 -0.5 356,332 + Synpcc7942_0364 0.85 -2.9 356,335 + Synpcc7942_0364 0.85 -1.1 356,340 - Synpcc7942_0364 0.86 -0.5 356,340 - Synpcc7942_0364 0.86 -0.2 356,402 - -0.1 356,411 + -0.7 356,419 - -0.6 356,459 - +0.8 356,459 - -0.1 356,482 - +2.1 356,482 - +0.5 356,486 + +0.8 356,633 + -1.1 356,666 + -0.2 356,666 + +0.3 356,674 - -0.5 356,674 - -0.4 356,681 - -2.3 356,734 - -0.3 356,747 - Synpcc7942_0365 0.11 +0.6 356,764 + Synpcc7942_0365 0.14 +1.2 356,764 + Synpcc7942_0365 0.14 +0.5 356,774 + Synpcc7942_0365 0.16 -0.7 356,779 + Synpcc7942_0365 0.16 +0.3 356,794 - +0.5 356,799 + Synpcc7942_0365 0.20 -1.1 356,873 + Synpcc7942_0365 0.31 -0.7 356,883 + Synpcc7942_0365 0.33 +1.9 356,884 + Synpcc7942_0365 0.33 +0.9 356,892 - Synpcc7942_0365 0.34 -0.3 356,892 - Synpcc7942_0365 0.34 +0.8 357,001 + Synpcc7942_0365 0.52 +2.3 357,006 - Synpcc7942_0365 0.52 -0.0 357,008 + Synpcc7942_0365 0.53 -0.6 357,016 - Synpcc7942_0365 0.54 +0.5 357,040 - Synpcc7942_0365 0.58 -2.7 357,040 - Synpcc7942_0365 0.58 +1.3 357,043 + Synpcc7942_0365 0.58 +1.3 357,052 - Synpcc7942_0365 0.60 +0.9 357,083 - Synpcc7942_0365 0.65 +0.3 357,092 - Synpcc7942_0365 0.66 +0.4 357,111 + -1.7 357,119 - Synpcc7942_0365 0.70 +0.4 357,130 + Synpcc7942_0365 0.72 +0.5 357,132 + Synpcc7942_0365 0.72 -0.1 357,143 + Synpcc7942_0365 0.74 +2.1 357,225 - Synpcc7942_0365 0.87 +0.4 357,243 + +2.5 357,249 + +0.8 357,266 + -0.2 357,266 + -0.1 357,266 + -2.9 357,273 + +0.5 357,274 - -0.1 357,274 - +0.6 357,274 - +0.7 357,296 + -0.3 357,296 + -0.8 357,304 - +0.3 357,352 - +1.1 357,447 + -0.1 357,454 + -3.0 357,454 + +1.7 357,454 + -0.4 357,459 + +0.9 357,459 + -1.1 357,466 + +0.9 357,466 + +0.1 357,467 - +0.5 357,481 - -0.1 357,504 + -0.1 357,512 - +1.2 357,512 - +0.2 357,530 + +1.0 357,556 + +1.2 357,556 + +1.7 357,564 - +1.2 357,570 - -0.1 357,579 + -1.1 357,581 + -0.1 357,582 - -0.2 357,582 - +1.6 357,594 - +0.4 357,620 + -0.7 357,627 + -1.1 357,635 - -1.7 357,635 - +0.3 357,691 - -0.6 357,717 + -0.1 357,717 + -1.1 357,717 + +0.9 357,722 - -1.0 357,725 - -0.7 357,725 - +1.5 357,725 - +1.4 357,725 - -0.3 357,770 + ltnT Synpcc7942_0366 0.10 -0.1 357,770 + ltnT Synpcc7942_0366 0.10 -1.1 357,773 - ltnT Synpcc7942_0366 0.10 +1.5 357,778 - ltnT Synpcc7942_0366 0.10 +1.9 357,778 - ltnT Synpcc7942_0366 0.10 -0.8 357,778 - ltnT Synpcc7942_0366 0.10 +1.4 357,800 + ltnT Synpcc7942_0366 0.11 +1.2 357,808 - ltnT Synpcc7942_0366 0.12 -0.3 357,848 + ltnT Synpcc7942_0366 0.14 -0.8 357,851 - ltnT Synpcc7942_0366 0.14 +2.2 357,851 - -1.1 357,851 - ltnT Synpcc7942_0366 0.14 -0.5 357,882 + ltnT Synpcc7942_0366 0.15 -2.4 357,882 - ltnT Synpcc7942_0366 0.15 +2.2 357,897 + ltnT Synpcc7942_0366 0.16 +0.4 357,897 + ltnT Synpcc7942_0366 0.16 -1.3 357,913 + ltnT Synpcc7942_0366 0.17 +0.3 357,913 + ltnT Synpcc7942_0366 0.17 +0.4 357,913 + ltnT Synpcc7942_0366 0.17 -0.9 357,913 + ltnT Synpcc7942_0366 0.17 -0.3 357,921 - ltnT Synpcc7942_0366 0.17 -0.1 357,921 - ltnT Synpcc7942_0366 0.17 +0.2 357,921 - ltnT Synpcc7942_0366 0.17 +0.3 357,931 + -0.1 357,951 - ltnT Synpcc7942_0366 0.18 -0.7 358,023 - ltnT Synpcc7942_0366 0.22 -0.1 358,033 + ltnT Synpcc7942_0366 0.22 +1.5 358,034 + ltnT Synpcc7942_0366 0.22 -0.3 358,072 + ltnT Synpcc7942_0366 0.24 +1.2 358,072 + ltnT Synpcc7942_0366 0.24 +0.1 358,072 + ltnT Synpcc7942_0366 0.24 -1.7 358,072 + ltnT Synpcc7942_0366 0.24 -0.1 358,072 + ltnT Synpcc7942_0366 0.24 -1.3 358,072 + ltnT Synpcc7942_0366 0.24 -0.6 358,072 + ltnT Synpcc7942_0366 0.24 -1.7 358,080 - ltnT Synpcc7942_0366 0.24 -0.1 358,080 - ltnT Synpcc7942_0366 0.24 +1.3 358,080 - ltnT Synpcc7942_0366 0.24 -0.7 358,080 - ltnT Synpcc7942_0366 0.24 +1.5 358,082 + ltnT Synpcc7942_0366 0.24 -1.1 358,082 + ltnT Synpcc7942_0366 0.24 -0.7 358,090 - ltnT Synpcc7942_0366 0.25 +1.1 358,090 - ltnT Synpcc7942_0366 0.25 +1.5 358,090 - ltnT Synpcc7942_0366 0.25 +1.7 358,126 + ltnT Synpcc7942_0366 0.26 +0.9 358,145 + ltnT Synpcc7942_0366 0.27 +0.4 358,175 + ltnT Synpcc7942_0366 0.29 +0.3 358,180 + ltnT Synpcc7942_0366 0.29 +0.1 358,183 - ltnT Synpcc7942_0366 0.29 -0.1 358,188 - ltnT Synpcc7942_0366 0.29 -0.1 358,193 - ltnT Synpcc7942_0366 0.29 -0.7 358,210 + ltnT Synpcc7942_0366 0.30 -0.7 358,210 + ltnT Synpcc7942_0366 0.30 -2.1 358,215 + ltnT Synpcc7942_0366 0.30 +1.1 358,218 - ltnT Synpcc7942_0366 0.31 +0.9 358,225 + ltnT Synpcc7942_0366 0.31 -0.1 358,230 + ltnT Synpcc7942_0366 0.31 -0.4 358,233 - ltnT Synpcc7942_0366 0.31 +2.5 358,235 + ltnT Synpcc7942_0366 0.31 +1.5 358,236 + ltnT Synpcc7942_0366 0.31 -1.1 358,238 - ltnT Synpcc7942_0366 0.32 +0.1 358,243 + ltnT Synpcc7942_0366 0.32 +0.6
Or see this region's nucleotide sequence