Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0360 and cp12 are separated by 232 nucleotides cp12 and Synpcc7942_0362 are separated by 124 nucleotides Synpcc7942_0362 and Synpcc7942_0363 are separated by 25 nucleotides
Synpcc7942_0360: Synpcc7942_0360 - hypothetical protein, at 353,103 to 354,299
_0360
Synpcc7942_0361: cp12 - hypothetical protein, at 354,532 to 354,759
cp12
Synpcc7942_0362: Synpcc7942_0362 - hypothetical protein, at 354,884 to 355,483
_0362
Synpcc7942_0363: Synpcc7942_0363 - hypothetical protein, at 355,509 to 355,793
_0363
Position (kb) 354
355 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 353.541 kb on + strand, within Synpcc7942_0360 at 353.545 kb on + strand, within Synpcc7942_0360 at 353.549 kb on - strand, within Synpcc7942_0360 at 353.562 kb on + strand, within Synpcc7942_0360 at 353.562 kb on + strand, within Synpcc7942_0360 at 353.567 kb on + strand, within Synpcc7942_0360 at 353.567 kb on + strand, within Synpcc7942_0360 at 353.570 kb on - strand, within Synpcc7942_0360 at 353.574 kb on + strand, within Synpcc7942_0360 at 353.575 kb on - strand, within Synpcc7942_0360 at 353.575 kb on - strand, within Synpcc7942_0360 at 353.581 kb on - strand, within Synpcc7942_0360 at 353.581 kb on - strand, within Synpcc7942_0360 at 353.588 kb on - strand, within Synpcc7942_0360 at 353.613 kb on + strand, within Synpcc7942_0360 at 353.677 kb on + strand, within Synpcc7942_0360 at 353.682 kb on + strand at 353.703 kb on + strand, within Synpcc7942_0360 at 353.711 kb on + strand, within Synpcc7942_0360 at 353.721 kb on - strand, within Synpcc7942_0360 at 353.723 kb on + strand, within Synpcc7942_0360 at 353.736 kb on - strand, within Synpcc7942_0360 at 353.748 kb on - strand, within Synpcc7942_0360 at 353.802 kb on + strand, within Synpcc7942_0360 at 353.834 kb on - strand, within Synpcc7942_0360 at 353.848 kb on + strand, within Synpcc7942_0360 at 353.848 kb on + strand, within Synpcc7942_0360 at 353.860 kb on + strand, within Synpcc7942_0360 at 353.860 kb on + strand, within Synpcc7942_0360 at 353.906 kb on - strand, within Synpcc7942_0360 at 353.926 kb on - strand, within Synpcc7942_0360 at 353.975 kb on + strand, within Synpcc7942_0360 at 353.995 kb on - strand, within Synpcc7942_0360 at 353.996 kb on - strand, within Synpcc7942_0360 at 353.996 kb on - strand, within Synpcc7942_0360 at 354.022 kb on + strand, within Synpcc7942_0360 at 354.030 kb on - strand, within Synpcc7942_0360 at 354.070 kb on - strand, within Synpcc7942_0360 at 354.077 kb on - strand, within Synpcc7942_0360 at 354.077 kb on - strand, within Synpcc7942_0360 at 354.079 kb on + strand, within Synpcc7942_0360 at 354.095 kb on + strand, within Synpcc7942_0360 at 354.095 kb on + strand, within Synpcc7942_0360 at 354.113 kb on + strand, within Synpcc7942_0360 at 354.153 kb on - strand, within Synpcc7942_0360 at 354.199 kb on + strand at 354.202 kb on - strand at 354.223 kb on + strand at 354.223 kb on + strand at 354.226 kb on - strand at 354.226 kb on - strand at 354.226 kb on - strand at 354.228 kb on + strand at 354.241 kb on + strand at 354.273 kb on + strand at 354.273 kb on + strand at 354.281 kb on - strand at 354.281 kb on - strand at 354.286 kb on + strand at 354.291 kb on - strand at 354.291 kb on - strand at 354.309 kb on - strand at 354.330 kb on + strand at 354.330 kb on + strand at 354.334 kb on - strand at 354.353 kb on + strand at 354.356 kb on + strand at 354.357 kb on - strand at 354.357 kb on - strand at 354.368 kb on + strand at 354.368 kb on + strand at 354.368 kb on + strand at 354.376 kb on - strand at 354.432 kb on + strand at 354.451 kb on + strand at 354.461 kb on + strand at 354.461 kb on + strand at 354.461 kb on + strand at 354.469 kb on - strand at 354.502 kb on - strand at 354.509 kb on + strand at 354.520 kb on - strand at 354.551 kb on + strand at 354.569 kb on - strand, within cp12 at 354.573 kb on + strand, within cp12 at 354.594 kb on - strand, within cp12 at 354.652 kb on + strand, within cp12 at 354.673 kb on + strand, within cp12 at 354.714 kb on - strand, within cp12 at 354.730 kb on + strand, within cp12 at 354.730 kb on + strand, within cp12 at 354.764 kb on - strand at 354.864 kb on + strand at 354.872 kb on - strand at 354.872 kb on - strand at 354.872 kb on - strand at 354.875 kb on - strand at 354.973 kb on + strand, within Synpcc7942_0362 at 354.993 kb on - strand, within Synpcc7942_0362 at 355.045 kb on + strand, within Synpcc7942_0362 at 355.379 kb on + strand, within Synpcc7942_0362 at 355.429 kb on - strand at 355.430 kb on - strand at 355.478 kb on + strand at 355.478 kb on + strand at 355.478 kb on + strand at 355.486 kb on - strand at 355.486 kb on - strand at 355.492 kb on - strand at 355.505 kb on + strand at 355.505 kb on + strand at 355.513 kb on - strand at 355.513 kb on - strand at 355.513 kb on - strand at 355.528 kb on + strand at 355.535 kb on + strand at 355.556 kb on + strand, within Synpcc7942_0363 at 355.564 kb on - strand, within Synpcc7942_0363 at 355.577 kb on + strand, within Synpcc7942_0363 at 355.592 kb on - strand, within Synpcc7942_0363 at 355.592 kb on - strand, within Synpcc7942_0363 at 355.597 kb on - strand, within Synpcc7942_0363 at 355.651 kb on + strand, within Synpcc7942_0363 at 355.657 kb on + strand, within Synpcc7942_0363 at 355.659 kb on - strand, within Synpcc7942_0363 at 355.704 kb on - strand, within Synpcc7942_0363 at 355.709 kb on - strand, within Synpcc7942_0363 at 355.719 kb on - strand, within Synpcc7942_0363 at 355.734 kb on - strand, within Synpcc7942_0363
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 353,541 + Synpcc7942_0360 0.37 -0.8 353,545 + Synpcc7942_0360 0.37 -0.6 353,549 - Synpcc7942_0360 0.37 -0.8 353,562 + Synpcc7942_0360 0.38 -1.3 353,562 + Synpcc7942_0360 0.38 -2.7 353,567 + Synpcc7942_0360 0.39 +2.1 353,567 + Synpcc7942_0360 0.39 -2.2 353,570 - Synpcc7942_0360 0.39 -1.7 353,574 + Synpcc7942_0360 0.39 -1.8 353,575 - Synpcc7942_0360 0.39 -1.5 353,575 - Synpcc7942_0360 0.39 +0.3 353,581 - Synpcc7942_0360 0.40 -1.7 353,581 - Synpcc7942_0360 0.40 -2.1 353,588 - Synpcc7942_0360 0.41 -2.4 353,613 + Synpcc7942_0360 0.43 -2.8 353,677 + Synpcc7942_0360 0.48 -2.5 353,682 + -1.7 353,703 + Synpcc7942_0360 0.50 -1.3 353,711 + Synpcc7942_0360 0.51 +0.2 353,721 - Synpcc7942_0360 0.52 -1.9 353,723 + Synpcc7942_0360 0.52 -1.3 353,736 - Synpcc7942_0360 0.53 -0.1 353,748 - Synpcc7942_0360 0.54 -1.9 353,802 + Synpcc7942_0360 0.58 -2.9 353,834 - Synpcc7942_0360 0.61 -1.0 353,848 + Synpcc7942_0360 0.62 -1.4 353,848 + Synpcc7942_0360 0.62 -2.3 353,860 + Synpcc7942_0360 0.63 -0.7 353,860 + Synpcc7942_0360 0.63 -0.4 353,906 - Synpcc7942_0360 0.67 +0.2 353,926 - Synpcc7942_0360 0.69 -1.5 353,975 + Synpcc7942_0360 0.73 -1.0 353,995 - Synpcc7942_0360 0.75 -0.8 353,996 - Synpcc7942_0360 0.75 +1.6 353,996 - Synpcc7942_0360 0.75 -3.1 354,022 + Synpcc7942_0360 0.77 -0.7 354,030 - Synpcc7942_0360 0.77 +0.1 354,070 - Synpcc7942_0360 0.81 -2.7 354,077 - Synpcc7942_0360 0.81 -0.9 354,077 - Synpcc7942_0360 0.81 -1.7 354,079 + Synpcc7942_0360 0.82 -1.6 354,095 + Synpcc7942_0360 0.83 -3.3 354,095 + Synpcc7942_0360 0.83 -1.1 354,113 + Synpcc7942_0360 0.84 -0.8 354,153 - Synpcc7942_0360 0.88 -1.2 354,199 + -0.7 354,202 - -2.1 354,223 + -1.1 354,223 + -0.7 354,226 - -3.3 354,226 - -3.5 354,226 - -0.1 354,228 + -0.1 354,241 + -0.1 354,273 + -2.3 354,273 + -0.8 354,281 - -1.3 354,281 - +0.3 354,286 + +1.6 354,291 - -2.1 354,291 - -1.1 354,309 - -1.7 354,330 + +1.3 354,330 + -1.1 354,334 - -1.1 354,353 + +0.3 354,356 + -1.1 354,357 - -1.1 354,357 - -0.1 354,368 + +0.1 354,368 + -0.3 354,368 + +0.1 354,376 - -0.1 354,432 + -1.7 354,451 + -1.0 354,461 + +0.3 354,461 + -1.7 354,461 + +1.3 354,469 - +1.5 354,502 - -1.5 354,509 + -1.7 354,520 - +0.3 354,551 + -1.7 354,569 - cp12 Synpcc7942_0361 0.16 -0.7 354,573 + cp12 Synpcc7942_0361 0.18 -1.3 354,594 - cp12 Synpcc7942_0361 0.27 -2.0 354,652 + cp12 Synpcc7942_0361 0.53 -1.9 354,673 + cp12 Synpcc7942_0361 0.62 +0.3 354,714 - cp12 Synpcc7942_0361 0.80 -2.7 354,730 + cp12 Synpcc7942_0361 0.87 -2.1 354,730 + cp12 Synpcc7942_0361 0.87 -1.7 354,764 - -1.3 354,864 + -0.5 354,872 - -0.3 354,872 - +0.5 354,872 - -0.1 354,875 - -0.1 354,973 + Synpcc7942_0362 0.15 +0.5 354,993 - Synpcc7942_0362 0.18 +0.9 355,045 + Synpcc7942_0362 0.27 -3.9 355,379 + Synpcc7942_0362 0.82 -2.4 355,429 - -2.4 355,430 - -0.1 355,478 + +0.7 355,478 + +1.1 355,478 + +1.5 355,486 - -0.1 355,486 - -1.0 355,492 - +0.1 355,505 + -0.1 355,505 + +0.3 355,513 - +0.9 355,513 - -0.7 355,513 - +0.0 355,528 + -0.5 355,535 + +0.9 355,556 + Synpcc7942_0363 0.16 +1.9 355,564 - Synpcc7942_0363 0.19 -0.8 355,577 + Synpcc7942_0363 0.24 -0.8 355,592 - Synpcc7942_0363 0.29 +0.7 355,592 - Synpcc7942_0363 0.29 -1.7 355,597 - Synpcc7942_0363 0.31 +1.2 355,651 + Synpcc7942_0363 0.50 -2.0 355,657 + Synpcc7942_0363 0.52 -0.9 355,659 - Synpcc7942_0363 0.53 +0.6 355,704 - Synpcc7942_0363 0.68 +0.8 355,709 - Synpcc7942_0363 0.70 +1.1 355,719 - Synpcc7942_0363 0.74 +0.4 355,734 - Synpcc7942_0363 0.79 +0.5
Or see this region's nucleotide sequence