Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0360

Experiment: D-Cycloserine 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0359 and Synpcc7942_0360 overlap by 105 nucleotidesSynpcc7942_0360 and cp12 are separated by 232 nucleotidescp12 and Synpcc7942_0362 are separated by 124 nucleotides Synpcc7942_0359: Synpcc7942_0359 - hypothetical protein, at 352,026 to 353,207 _0359 Synpcc7942_0360: Synpcc7942_0360 - hypothetical protein, at 353,103 to 354,299 _0360 Synpcc7942_0361: cp12 - hypothetical protein, at 354,532 to 354,759 cp12 Synpcc7942_0362: Synpcc7942_0362 - hypothetical protein, at 354,884 to 355,483 _0362 Position (kb) 353 354 355Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 352.126 kb on + strandat 352.145 kb on + strand, within Synpcc7942_0359at 352.145 kb on + strand, within Synpcc7942_0359at 352.149 kb on - strand, within Synpcc7942_0359at 352.180 kb on + strand, within Synpcc7942_0359at 352.197 kb on + strand, within Synpcc7942_0359at 352.206 kb on - strand, within Synpcc7942_0359at 352.259 kb on + strand, within Synpcc7942_0359at 352.267 kb on - strand, within Synpcc7942_0359at 352.268 kb on + strand, within Synpcc7942_0359at 352.268 kb on + strand, within Synpcc7942_0359at 352.273 kb on + strand, within Synpcc7942_0359at 352.276 kb on - strand, within Synpcc7942_0359at 352.277 kb on - strand, within Synpcc7942_0359at 352.281 kb on - strand, within Synpcc7942_0359at 352.281 kb on - strand, within Synpcc7942_0359at 352.324 kb on + strand, within Synpcc7942_0359at 352.339 kb on + strand, within Synpcc7942_0359at 352.394 kb on - strand, within Synpcc7942_0359at 352.402 kb on - strand, within Synpcc7942_0359at 352.413 kb on + strand, within Synpcc7942_0359at 352.533 kb on + strand, within Synpcc7942_0359at 352.533 kb on + strand, within Synpcc7942_0359at 352.541 kb on - strand, within Synpcc7942_0359at 352.541 kb on - strand, within Synpcc7942_0359at 352.546 kb on - strand, within Synpcc7942_0359at 352.563 kb on + strand, within Synpcc7942_0359at 352.563 kb on + strand, within Synpcc7942_0359at 352.563 kb on + strand, within Synpcc7942_0359at 352.571 kb on - strand, within Synpcc7942_0359at 352.571 kb on - strand, within Synpcc7942_0359at 352.590 kb on - strand, within Synpcc7942_0359at 352.607 kb on + strand, within Synpcc7942_0359at 352.607 kb on + strand, within Synpcc7942_0359at 352.664 kb on - strand, within Synpcc7942_0359at 352.665 kb on + strand, within Synpcc7942_0359at 352.670 kb on + strand, within Synpcc7942_0359at 352.683 kb on - strand, within Synpcc7942_0359at 352.692 kb on + strand, within Synpcc7942_0359at 352.723 kb on + strand, within Synpcc7942_0359at 352.728 kb on - strand, within Synpcc7942_0359at 352.736 kb on - strand, within Synpcc7942_0359at 352.753 kb on + strand, within Synpcc7942_0359at 352.754 kb on + strand, within Synpcc7942_0359at 352.769 kb on + strand, within Synpcc7942_0359at 352.769 kb on + strand, within Synpcc7942_0359at 352.777 kb on - strand, within Synpcc7942_0359at 352.785 kb on - strand, within Synpcc7942_0359at 352.786 kb on - strand, within Synpcc7942_0359at 352.874 kb on + strand, within Synpcc7942_0359at 352.895 kb on + strand, within Synpcc7942_0359at 352.898 kb on - strand, within Synpcc7942_0359at 352.992 kb on - strand, within Synpcc7942_0359at 353.010 kb on - strand, within Synpcc7942_0359at 353.010 kb on - strand, within Synpcc7942_0359at 353.016 kb on + strand, within Synpcc7942_0359at 353.034 kb on + strand, within Synpcc7942_0359at 353.042 kb on - strand, within Synpcc7942_0359at 353.057 kb on + strand, within Synpcc7942_0359at 353.068 kb on - strand, within Synpcc7942_0359at 353.081 kb on - strand, within Synpcc7942_0359at 353.103 kb on - strandat 353.132 kb on + strandat 353.140 kb on + strandat 353.140 kb on - strandat 353.148 kb on - strandat 353.153 kb on + strandat 353.178 kb on + strandat 353.203 kb on + strandat 353.203 kb on + strandat 353.211 kb on - strandat 353.221 kb on - strandat 353.221 kb on - strandat 353.229 kb on - strand, within Synpcc7942_0360at 353.256 kb on - strand, within Synpcc7942_0360at 353.266 kb on - strand, within Synpcc7942_0360at 353.270 kb on - strand, within Synpcc7942_0360at 353.287 kb on - strand, within Synpcc7942_0360at 353.311 kb on + strand, within Synpcc7942_0360at 353.317 kb on + strand, within Synpcc7942_0360at 353.325 kb on - strand, within Synpcc7942_0360at 353.370 kb on + strand, within Synpcc7942_0360at 353.380 kb on + strand, within Synpcc7942_0360at 353.396 kb on - strandat 353.405 kb on + strand, within Synpcc7942_0360at 353.405 kb on + strand, within Synpcc7942_0360at 353.410 kb on + strand, within Synpcc7942_0360at 353.450 kb on + strand, within Synpcc7942_0360at 353.450 kb on + strand, within Synpcc7942_0360at 353.458 kb on - strand, within Synpcc7942_0360at 353.463 kb on - strand, within Synpcc7942_0360at 353.465 kb on - strand, within Synpcc7942_0360at 353.473 kb on - strand, within Synpcc7942_0360at 353.473 kb on - strand, within Synpcc7942_0360at 353.489 kb on + strand, within Synpcc7942_0360at 353.489 kb on + strand, within Synpcc7942_0360at 353.498 kb on - strand, within Synpcc7942_0360at 353.522 kb on + strand, within Synpcc7942_0360at 353.522 kb on + strand, within Synpcc7942_0360at 353.522 kb on + strand, within Synpcc7942_0360at 353.522 kb on + strand, within Synpcc7942_0360at 353.530 kb on - strand, within Synpcc7942_0360at 353.530 kb on - strand, within Synpcc7942_0360at 353.541 kb on + strand, within Synpcc7942_0360at 353.545 kb on + strand, within Synpcc7942_0360at 353.549 kb on - strand, within Synpcc7942_0360at 353.562 kb on + strand, within Synpcc7942_0360at 353.562 kb on + strand, within Synpcc7942_0360at 353.567 kb on + strand, within Synpcc7942_0360at 353.567 kb on + strand, within Synpcc7942_0360at 353.570 kb on - strand, within Synpcc7942_0360at 353.574 kb on + strand, within Synpcc7942_0360at 353.575 kb on - strand, within Synpcc7942_0360at 353.575 kb on - strand, within Synpcc7942_0360at 353.581 kb on - strand, within Synpcc7942_0360at 353.581 kb on - strand, within Synpcc7942_0360at 353.588 kb on - strand, within Synpcc7942_0360at 353.613 kb on + strand, within Synpcc7942_0360at 353.677 kb on + strand, within Synpcc7942_0360at 353.682 kb on + strandat 353.703 kb on + strand, within Synpcc7942_0360at 353.711 kb on + strand, within Synpcc7942_0360at 353.721 kb on - strand, within Synpcc7942_0360at 353.723 kb on + strand, within Synpcc7942_0360at 353.736 kb on - strand, within Synpcc7942_0360at 353.748 kb on - strand, within Synpcc7942_0360at 353.802 kb on + strand, within Synpcc7942_0360at 353.834 kb on - strand, within Synpcc7942_0360at 353.848 kb on + strand, within Synpcc7942_0360at 353.848 kb on + strand, within Synpcc7942_0360at 353.860 kb on + strand, within Synpcc7942_0360at 353.860 kb on + strand, within Synpcc7942_0360at 353.906 kb on - strand, within Synpcc7942_0360at 353.926 kb on - strand, within Synpcc7942_0360at 353.975 kb on + strand, within Synpcc7942_0360at 353.995 kb on - strand, within Synpcc7942_0360at 353.996 kb on - strand, within Synpcc7942_0360at 353.996 kb on - strand, within Synpcc7942_0360at 354.022 kb on + strand, within Synpcc7942_0360at 354.030 kb on - strand, within Synpcc7942_0360at 354.070 kb on - strand, within Synpcc7942_0360at 354.077 kb on - strand, within Synpcc7942_0360at 354.077 kb on - strand, within Synpcc7942_0360at 354.079 kb on + strand, within Synpcc7942_0360at 354.095 kb on + strand, within Synpcc7942_0360at 354.095 kb on + strand, within Synpcc7942_0360at 354.113 kb on + strand, within Synpcc7942_0360at 354.153 kb on - strand, within Synpcc7942_0360at 354.199 kb on + strandat 354.202 kb on - strandat 354.223 kb on + strandat 354.223 kb on + strandat 354.226 kb on - strandat 354.226 kb on - strandat 354.226 kb on - strandat 354.228 kb on + strandat 354.241 kb on + strandat 354.273 kb on + strandat 354.273 kb on + strandat 354.281 kb on - strandat 354.281 kb on - strandat 354.286 kb on + strandat 354.291 kb on - strandat 354.291 kb on - strandat 354.309 kb on - strandat 354.330 kb on + strandat 354.330 kb on + strandat 354.334 kb on - strandat 354.353 kb on + strandat 354.356 kb on + strandat 354.357 kb on - strandat 354.357 kb on - strandat 354.368 kb on + strandat 354.368 kb on + strandat 354.368 kb on + strandat 354.376 kb on - strandat 354.432 kb on + strandat 354.451 kb on + strandat 354.461 kb on + strandat 354.461 kb on + strandat 354.461 kb on + strandat 354.469 kb on - strandat 354.502 kb on - strandat 354.509 kb on + strandat 354.520 kb on - strandat 354.551 kb on + strandat 354.569 kb on - strand, within cp12at 354.573 kb on + strand, within cp12at 354.594 kb on - strand, within cp12at 354.652 kb on + strand, within cp12at 354.673 kb on + strand, within cp12at 354.714 kb on - strand, within cp12at 354.730 kb on + strand, within cp12at 354.730 kb on + strand, within cp12at 354.764 kb on - strandat 354.864 kb on + strandat 354.872 kb on - strandat 354.872 kb on - strandat 354.872 kb on - strandat 354.875 kb on - strandat 354.973 kb on + strand, within Synpcc7942_0362at 354.993 kb on - strand, within Synpcc7942_0362at 355.045 kb on + strand, within Synpcc7942_0362

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
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352,126 + +0.6
352,145 + Synpcc7942_0359 0.10 +0.1
352,145 + Synpcc7942_0359 0.10 +0.2
352,149 - Synpcc7942_0359 0.10 -0.1
352,180 + Synpcc7942_0359 0.13 +1.1
352,197 + Synpcc7942_0359 0.14 -1.1
352,206 - Synpcc7942_0359 0.15 -0.3
352,259 + Synpcc7942_0359 0.20 +0.6
352,267 - Synpcc7942_0359 0.20 -0.1
352,268 + Synpcc7942_0359 0.20 +1.1
352,268 + Synpcc7942_0359 0.20 -0.1
352,273 + Synpcc7942_0359 0.21 +0.4
352,276 - Synpcc7942_0359 0.21 -0.5
352,277 - Synpcc7942_0359 0.21 -0.1
352,281 - Synpcc7942_0359 0.22 +0.7
352,281 - Synpcc7942_0359 0.22 -2.0
352,324 + Synpcc7942_0359 0.25 -0.5
352,339 + Synpcc7942_0359 0.26 -2.4
352,394 - Synpcc7942_0359 0.31 +0.2
352,402 - Synpcc7942_0359 0.32 +1.3
352,413 + Synpcc7942_0359 0.33 +1.5
352,533 + Synpcc7942_0359 0.43 -0.1
352,533 + Synpcc7942_0359 0.43 +1.1
352,541 - Synpcc7942_0359 0.44 +1.3
352,541 - Synpcc7942_0359 0.44 -0.1
352,546 - Synpcc7942_0359 0.44 -0.4
352,563 + Synpcc7942_0359 0.45 -0.1
352,563 + Synpcc7942_0359 0.45 +0.1
352,563 + Synpcc7942_0359 0.45 +0.5
352,571 - Synpcc7942_0359 0.46 -1.1
352,571 - Synpcc7942_0359 0.46 -1.0
352,590 - Synpcc7942_0359 0.48 -0.6
352,607 + Synpcc7942_0359 0.49 -0.7
352,607 + Synpcc7942_0359 0.49 +0.1
352,664 - Synpcc7942_0359 0.54 -1.2
352,665 + Synpcc7942_0359 0.54 +1.7
352,670 + Synpcc7942_0359 0.54 +0.9
352,683 - Synpcc7942_0359 0.56 +0.4
352,692 + Synpcc7942_0359 0.56 -0.4
352,723 + Synpcc7942_0359 0.59 +1.5
352,728 - Synpcc7942_0359 0.59 -0.1
352,736 - Synpcc7942_0359 0.60 -0.8
352,753 + Synpcc7942_0359 0.62 -0.1
352,754 + Synpcc7942_0359 0.62 -0.7
352,769 + Synpcc7942_0359 0.63 +0.5
352,769 + Synpcc7942_0359 0.63 +0.9
352,777 - Synpcc7942_0359 0.64 -0.1
352,785 - Synpcc7942_0359 0.64 +0.3
352,786 - Synpcc7942_0359 0.64 -1.1
352,874 + Synpcc7942_0359 0.72 -1.7
352,895 + Synpcc7942_0359 0.74 +0.1
352,898 - Synpcc7942_0359 0.74 -0.1
352,992 - Synpcc7942_0359 0.82 -0.1
353,010 - Synpcc7942_0359 0.83 -2.4
353,010 - Synpcc7942_0359 0.83 -0.4
353,016 + Synpcc7942_0359 0.84 -0.3
353,034 + Synpcc7942_0359 0.85 -0.7
353,042 - Synpcc7942_0359 0.86 +0.3
353,057 + Synpcc7942_0359 0.87 -0.6
353,068 - Synpcc7942_0359 0.88 -0.1
353,081 - Synpcc7942_0359 0.89 -0.1
353,103 - +1.1
353,132 + +0.4
353,140 + -0.3
353,140 - -0.8
353,148 - -1.7
353,153 + -3.8
353,178 + -0.7
353,203 + -2.1
353,203 + -2.9
353,211 - -1.4
353,221 - +0.1
353,221 - -1.5
353,229 - Synpcc7942_0360 0.11 -2.1
353,256 - Synpcc7942_0360 0.13 -0.1
353,266 - Synpcc7942_0360 0.14 -3.5
353,270 - Synpcc7942_0360 0.14 -2.1
353,287 - Synpcc7942_0360 0.15 -1.9
353,311 + Synpcc7942_0360 0.17 -1.8
353,317 + Synpcc7942_0360 0.18 -0.3
353,325 - Synpcc7942_0360 0.19 -1.3
353,370 + Synpcc7942_0360 0.22 -0.6
353,380 + Synpcc7942_0360 0.23 -1.1
353,396 - -0.1
353,405 + Synpcc7942_0360 0.25 -2.0
353,405 + Synpcc7942_0360 0.25 -1.9
353,410 + Synpcc7942_0360 0.26 -0.1
353,450 + Synpcc7942_0360 0.29 -1.7
353,450 + Synpcc7942_0360 0.29 -1.1
353,458 - Synpcc7942_0360 0.30 +0.5
353,463 - Synpcc7942_0360 0.30 -0.4
353,465 - Synpcc7942_0360 0.30 -2.4
353,473 - Synpcc7942_0360 0.31 -1.7
353,473 - Synpcc7942_0360 0.31 -1.4
353,489 + Synpcc7942_0360 0.32 -0.8
353,489 + Synpcc7942_0360 0.32 +1.2
353,498 - Synpcc7942_0360 0.33 +0.5
353,522 + Synpcc7942_0360 0.35 -1.9
353,522 + Synpcc7942_0360 0.35 -2.1
353,522 + Synpcc7942_0360 0.35 -2.4
353,522 + Synpcc7942_0360 0.35 -2.4
353,530 - Synpcc7942_0360 0.36 -1.1
353,530 - Synpcc7942_0360 0.36 -2.2
353,541 + Synpcc7942_0360 0.37 -0.8
353,545 + Synpcc7942_0360 0.37 -0.6
353,549 - Synpcc7942_0360 0.37 -0.8
353,562 + Synpcc7942_0360 0.38 -1.3
353,562 + Synpcc7942_0360 0.38 -2.7
353,567 + Synpcc7942_0360 0.39 +2.1
353,567 + Synpcc7942_0360 0.39 -2.2
353,570 - Synpcc7942_0360 0.39 -1.7
353,574 + Synpcc7942_0360 0.39 -1.8
353,575 - Synpcc7942_0360 0.39 -1.5
353,575 - Synpcc7942_0360 0.39 +0.3
353,581 - Synpcc7942_0360 0.40 -1.7
353,581 - Synpcc7942_0360 0.40 -2.1
353,588 - Synpcc7942_0360 0.41 -2.4
353,613 + Synpcc7942_0360 0.43 -2.8
353,677 + Synpcc7942_0360 0.48 -2.5
353,682 + -1.7
353,703 + Synpcc7942_0360 0.50 -1.3
353,711 + Synpcc7942_0360 0.51 +0.2
353,721 - Synpcc7942_0360 0.52 -1.9
353,723 + Synpcc7942_0360 0.52 -1.3
353,736 - Synpcc7942_0360 0.53 -0.1
353,748 - Synpcc7942_0360 0.54 -1.9
353,802 + Synpcc7942_0360 0.58 -2.9
353,834 - Synpcc7942_0360 0.61 -1.0
353,848 + Synpcc7942_0360 0.62 -1.4
353,848 + Synpcc7942_0360 0.62 -2.3
353,860 + Synpcc7942_0360 0.63 -0.7
353,860 + Synpcc7942_0360 0.63 -0.4
353,906 - Synpcc7942_0360 0.67 +0.2
353,926 - Synpcc7942_0360 0.69 -1.5
353,975 + Synpcc7942_0360 0.73 -1.0
353,995 - Synpcc7942_0360 0.75 -0.8
353,996 - Synpcc7942_0360 0.75 +1.6
353,996 - Synpcc7942_0360 0.75 -3.1
354,022 + Synpcc7942_0360 0.77 -0.7
354,030 - Synpcc7942_0360 0.77 +0.1
354,070 - Synpcc7942_0360 0.81 -2.7
354,077 - Synpcc7942_0360 0.81 -0.9
354,077 - Synpcc7942_0360 0.81 -1.7
354,079 + Synpcc7942_0360 0.82 -1.6
354,095 + Synpcc7942_0360 0.83 -3.3
354,095 + Synpcc7942_0360 0.83 -1.1
354,113 + Synpcc7942_0360 0.84 -0.8
354,153 - Synpcc7942_0360 0.88 -1.2
354,199 + -0.7
354,202 - -2.1
354,223 + -1.1
354,223 + -0.7
354,226 - -3.3
354,226 - -3.5
354,226 - -0.1
354,228 + -0.1
354,241 + -0.1
354,273 + -2.3
354,273 + -0.8
354,281 - -1.3
354,281 - +0.3
354,286 + +1.6
354,291 - -2.1
354,291 - -1.1
354,309 - -1.7
354,330 + +1.3
354,330 + -1.1
354,334 - -1.1
354,353 + +0.3
354,356 + -1.1
354,357 - -1.1
354,357 - -0.1
354,368 + +0.1
354,368 + -0.3
354,368 + +0.1
354,376 - -0.1
354,432 + -1.7
354,451 + -1.0
354,461 + +0.3
354,461 + -1.7
354,461 + +1.3
354,469 - +1.5
354,502 - -1.5
354,509 + -1.7
354,520 - +0.3
354,551 + -1.7
354,569 - cp12 Synpcc7942_0361 0.16 -0.7
354,573 + cp12 Synpcc7942_0361 0.18 -1.3
354,594 - cp12 Synpcc7942_0361 0.27 -2.0
354,652 + cp12 Synpcc7942_0361 0.53 -1.9
354,673 + cp12 Synpcc7942_0361 0.62 +0.3
354,714 - cp12 Synpcc7942_0361 0.80 -2.7
354,730 + cp12 Synpcc7942_0361 0.87 -2.1
354,730 + cp12 Synpcc7942_0361 0.87 -1.7
354,764 - -1.3
354,864 + -0.5
354,872 - -0.3
354,872 - +0.5
354,872 - -0.1
354,875 - -0.1
354,973 + Synpcc7942_0362 0.15 +0.5
354,993 - Synpcc7942_0362 0.18 +0.9
355,045 + Synpcc7942_0362 0.27 -3.9

Or see this region's nucleotide sequence