Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0352

Experiment: D-Cycloserine 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycf22 and Synpcc7942_0352 overlap by 10 nucleotidesSynpcc7942_0352 and Synpcc7942_0353 are separated by 38 nucleotides Synpcc7942_0351: ycf22 - putative ABC transport system substrate-binding protein, at 343,699 to 344,832 ycf22 Synpcc7942_0352: Synpcc7942_0352 - Methionine sulfoxide reductase B, at 344,823 to 345,431 _0352 Synpcc7942_0353: Synpcc7942_0353 - Na+-dependent transporter-like, at 345,470 to 346,432 _0353 Position (kb) 344 345 346Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 343.841 kb on + strand, within ycf22at 343.880 kb on + strand, within ycf22at 343.897 kb on + strand, within ycf22at 343.912 kb on + strand, within ycf22at 343.915 kb on - strand, within ycf22at 343.915 kb on - strand, within ycf22at 343.920 kb on - strand, within ycf22at 343.922 kb on + strand, within ycf22at 343.925 kb on - strand, within ycf22at 343.925 kb on - strand, within ycf22at 343.925 kb on - strand, within ycf22at 343.925 kb on - strand, within ycf22at 343.933 kb on - strand, within ycf22at 344.003 kb on - strand, within ycf22at 344.015 kb on + strand, within ycf22at 344.022 kb on + strand, within ycf22at 344.022 kb on + strand, within ycf22at 344.064 kb on + strand, within ycf22at 344.064 kb on + strand, within ycf22at 344.127 kb on + strand, within ycf22at 344.131 kb on - strand, within ycf22at 344.184 kb on + strand, within ycf22at 344.202 kb on + strand, within ycf22at 344.210 kb on - strand, within ycf22at 344.210 kb on - strand, within ycf22at 344.211 kb on + strand, within ycf22at 344.211 kb on + strand, within ycf22at 344.219 kb on - strand, within ycf22at 344.277 kb on - strand, within ycf22at 344.315 kb on - strand, within ycf22at 344.326 kb on + strand, within ycf22at 344.334 kb on - strand, within ycf22at 344.361 kb on - strand, within ycf22at 344.389 kb on + strand, within ycf22at 344.439 kb on - strand, within ycf22at 344.441 kb on + strand, within ycf22at 344.449 kb on - strand, within ycf22at 344.449 kb on - strand, within ycf22at 344.449 kb on - strand, within ycf22at 344.449 kb on - strand, within ycf22at 344.449 kb on - strand, within ycf22at 344.518 kb on - strand, within ycf22at 344.518 kb on - strand, within ycf22at 344.551 kb on + strand, within ycf22at 344.559 kb on - strand, within ycf22at 344.559 kb on - strand, within ycf22at 344.587 kb on - strand, within ycf22at 344.591 kb on + strand, within ycf22at 344.641 kb on + strand, within ycf22at 344.732 kb on - strandat 344.754 kb on + strandat 344.795 kb on + strandat 344.797 kb on + strandat 344.816 kb on + strandat 344.816 kb on + strandat 344.824 kb on - strandat 344.824 kb on - strandat 344.826 kb on + strandat 344.829 kb on - strandat 344.829 kb on - strandat 344.831 kb on + strandat 344.834 kb on - strandat 344.850 kb on + strandat 344.858 kb on - strandat 344.864 kb on - strandat 344.899 kb on - strand, within Synpcc7942_0352at 344.904 kb on + strand, within Synpcc7942_0352at 344.916 kb on + strand, within Synpcc7942_0352at 344.924 kb on + strand, within Synpcc7942_0352at 344.943 kb on + strand, within Synpcc7942_0352at 344.943 kb on + strand, within Synpcc7942_0352at 345.037 kb on + strand, within Synpcc7942_0352at 345.045 kb on - strand, within Synpcc7942_0352at 345.047 kb on - strand, within Synpcc7942_0352at 345.061 kb on + strand, within Synpcc7942_0352at 345.069 kb on - strand, within Synpcc7942_0352at 345.085 kb on + strand, within Synpcc7942_0352at 345.090 kb on + strand, within Synpcc7942_0352at 345.134 kb on + strand, within Synpcc7942_0352at 345.153 kb on + strand, within Synpcc7942_0352at 345.163 kb on + strand, within Synpcc7942_0352at 345.168 kb on + strand, within Synpcc7942_0352at 345.170 kb on + strand, within Synpcc7942_0352at 345.171 kb on - strand, within Synpcc7942_0352at 345.176 kb on - strand, within Synpcc7942_0352at 345.178 kb on - strand, within Synpcc7942_0352at 345.203 kb on + strand, within Synpcc7942_0352at 345.217 kb on + strand, within Synpcc7942_0352at 345.220 kb on - strand, within Synpcc7942_0352at 345.224 kb on - strand, within Synpcc7942_0352at 345.226 kb on + strand, within Synpcc7942_0352at 345.240 kb on - strand, within Synpcc7942_0352at 345.281 kb on + strand, within Synpcc7942_0352at 345.287 kb on + strand, within Synpcc7942_0352at 345.292 kb on + strand, within Synpcc7942_0352at 345.297 kb on + strand, within Synpcc7942_0352at 345.301 kb on + strand, within Synpcc7942_0352at 345.305 kb on - strand, within Synpcc7942_0352at 345.372 kb on - strandat 345.388 kb on - strandat 345.403 kb on + strandat 345.403 kb on + strandat 345.403 kb on + strandat 345.411 kb on - strandat 345.438 kb on + strandat 345.441 kb on - strandat 345.451 kb on - strandat 345.458 kb on + strandat 345.476 kb on - strandat 345.519 kb on - strandat 345.552 kb on - strandat 345.578 kb on + strand, within Synpcc7942_0353at 345.612 kb on + strand, within Synpcc7942_0353at 345.612 kb on + strand, within Synpcc7942_0353at 345.619 kb on - strand, within Synpcc7942_0353at 345.634 kb on + strand, within Synpcc7942_0353at 345.636 kb on - strand, within Synpcc7942_0353at 345.688 kb on + strand, within Synpcc7942_0353at 345.688 kb on + strand, within Synpcc7942_0353at 345.688 kb on + strand, within Synpcc7942_0353at 345.688 kb on + strand, within Synpcc7942_0353at 345.688 kb on + strand, within Synpcc7942_0353at 345.688 kb on + strand, within Synpcc7942_0353at 345.696 kb on - strand, within Synpcc7942_0353at 345.696 kb on - strand, within Synpcc7942_0353at 345.696 kb on - strand, within Synpcc7942_0353at 345.696 kb on - strand, within Synpcc7942_0353at 345.704 kb on + strand, within Synpcc7942_0353at 345.704 kb on + strand, within Synpcc7942_0353at 345.712 kb on - strand, within Synpcc7942_0353at 345.712 kb on - strand, within Synpcc7942_0353at 345.719 kb on + strand, within Synpcc7942_0353at 345.726 kb on - strand, within Synpcc7942_0353at 345.728 kb on + strand, within Synpcc7942_0353at 345.728 kb on + strand, within Synpcc7942_0353at 345.736 kb on - strand, within Synpcc7942_0353at 345.774 kb on + strand, within Synpcc7942_0353at 345.836 kb on - strand, within Synpcc7942_0353at 345.836 kb on - strand, within Synpcc7942_0353at 345.870 kb on + strand, within Synpcc7942_0353at 345.909 kb on - strandat 345.933 kb on - strand, within Synpcc7942_0353at 345.946 kb on - strand, within Synpcc7942_0353at 345.947 kb on + strand, within Synpcc7942_0353at 345.947 kb on + strand, within Synpcc7942_0353at 345.962 kb on - strand, within Synpcc7942_0353at 345.967 kb on + strand, within Synpcc7942_0353at 345.976 kb on - strand, within Synpcc7942_0353at 345.987 kb on + strand, within Synpcc7942_0353at 345.992 kb on + strand, within Synpcc7942_0353at 345.992 kb on + strand, within Synpcc7942_0353at 345.995 kb on - strand, within Synpcc7942_0353at 346.000 kb on + strand, within Synpcc7942_0353at 346.000 kb on - strand, within Synpcc7942_0353at 346.000 kb on - strand, within Synpcc7942_0353at 346.000 kb on - strand, within Synpcc7942_0353at 346.000 kb on - strand, within Synpcc7942_0353at 346.002 kb on + strand, within Synpcc7942_0353at 346.002 kb on + strand, within Synpcc7942_0353at 346.008 kb on - strand, within Synpcc7942_0353at 346.010 kb on - strand, within Synpcc7942_0353at 346.026 kb on + strand, within Synpcc7942_0353at 346.043 kb on + strand, within Synpcc7942_0353at 346.062 kb on + strand, within Synpcc7942_0353at 346.072 kb on + strand, within Synpcc7942_0353at 346.106 kb on - strand, within Synpcc7942_0353at 346.106 kb on - strand, within Synpcc7942_0353at 346.199 kb on + strand, within Synpcc7942_0353at 346.275 kb on - strand, within Synpcc7942_0353at 346.294 kb on + strand, within Synpcc7942_0353at 346.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
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343,841 + ycf22 Synpcc7942_0351 0.13 +2.3
343,880 + ycf22 Synpcc7942_0351 0.16 +0.5
343,897 + ycf22 Synpcc7942_0351 0.17 +1.2
343,912 + ycf22 Synpcc7942_0351 0.19 +0.8
343,915 - ycf22 Synpcc7942_0351 0.19 -0.1
343,915 - ycf22 Synpcc7942_0351 0.19 -1.2
343,920 - ycf22 Synpcc7942_0351 0.19 +0.3
343,922 + ycf22 Synpcc7942_0351 0.20 -0.3
343,925 - ycf22 Synpcc7942_0351 0.20 +0.2
343,925 - ycf22 Synpcc7942_0351 0.20 +2.0
343,925 - ycf22 Synpcc7942_0351 0.20 +0.6
343,925 - ycf22 Synpcc7942_0351 0.20 -2.1
343,933 - ycf22 Synpcc7942_0351 0.21 -2.2
344,003 - ycf22 Synpcc7942_0351 0.27 -0.6
344,015 + ycf22 Synpcc7942_0351 0.28 +0.6
344,022 + ycf22 Synpcc7942_0351 0.28 +1.1
344,022 + ycf22 Synpcc7942_0351 0.28 +0.1
344,064 + ycf22 Synpcc7942_0351 0.32 +0.9
344,064 + ycf22 Synpcc7942_0351 0.32 +2.1
344,127 + ycf22 Synpcc7942_0351 0.38 -0.3
344,131 - ycf22 Synpcc7942_0351 0.38 +0.7
344,184 + ycf22 Synpcc7942_0351 0.43 -0.2
344,202 + ycf22 Synpcc7942_0351 0.44 -0.5
344,210 - ycf22 Synpcc7942_0351 0.45 +1.1
344,210 - ycf22 Synpcc7942_0351 0.45 -0.9
344,211 + ycf22 Synpcc7942_0351 0.45 +0.7
344,211 + ycf22 Synpcc7942_0351 0.45 +1.5
344,219 - ycf22 Synpcc7942_0351 0.46 +0.2
344,277 - ycf22 Synpcc7942_0351 0.51 -0.1
344,315 - ycf22 Synpcc7942_0351 0.54 -0.1
344,326 + ycf22 Synpcc7942_0351 0.55 -0.5
344,334 - ycf22 Synpcc7942_0351 0.56 -0.6
344,361 - ycf22 Synpcc7942_0351 0.58 -0.9
344,389 + ycf22 Synpcc7942_0351 0.61 -0.5
344,439 - ycf22 Synpcc7942_0351 0.65 -2.9
344,441 + ycf22 Synpcc7942_0351 0.65 -1.7
344,449 - ycf22 Synpcc7942_0351 0.66 +0.7
344,449 - ycf22 Synpcc7942_0351 0.66 +1.7
344,449 - ycf22 Synpcc7942_0351 0.66 +1.5
344,449 - ycf22 Synpcc7942_0351 0.66 -0.1
344,449 - ycf22 Synpcc7942_0351 0.66 +0.7
344,518 - ycf22 Synpcc7942_0351 0.72 -0.1
344,518 - ycf22 Synpcc7942_0351 0.72 +1.1
344,551 + ycf22 Synpcc7942_0351 0.75 +1.4
344,559 - ycf22 Synpcc7942_0351 0.76 +0.2
344,559 - ycf22 Synpcc7942_0351 0.76 -0.1
344,587 - ycf22 Synpcc7942_0351 0.78 +0.4
344,591 + ycf22 Synpcc7942_0351 0.79 -0.7
344,641 + ycf22 Synpcc7942_0351 0.83 +0.1
344,732 - +0.9
344,754 + +0.8
344,795 + -0.1
344,797 + +1.3
344,816 + +0.9
344,816 + -0.1
344,824 - +0.3
344,824 - -1.8
344,826 + -0.2
344,829 - +0.6
344,829 - +0.5
344,831 + -1.1
344,834 - +0.7
344,850 + -0.1
344,858 - +0.7
344,864 - +0.1
344,899 - Synpcc7942_0352 0.12 +0.2
344,904 + Synpcc7942_0352 0.13 +0.1
344,916 + Synpcc7942_0352 0.15 +1.1
344,924 + Synpcc7942_0352 0.17 +1.5
344,943 + Synpcc7942_0352 0.20 +1.2
344,943 + Synpcc7942_0352 0.20 -1.1
345,037 + Synpcc7942_0352 0.35 -1.5
345,045 - Synpcc7942_0352 0.36 -0.1
345,047 - Synpcc7942_0352 0.37 +0.7
345,061 + Synpcc7942_0352 0.39 -0.8
345,069 - Synpcc7942_0352 0.40 +1.2
345,085 + Synpcc7942_0352 0.43 +0.1
345,090 + Synpcc7942_0352 0.44 -0.6
345,134 + Synpcc7942_0352 0.51 +1.7
345,153 + Synpcc7942_0352 0.54 +1.9
345,163 + Synpcc7942_0352 0.56 -1.3
345,168 + Synpcc7942_0352 0.57 +0.9
345,170 + Synpcc7942_0352 0.57 -1.1
345,171 - Synpcc7942_0352 0.57 +0.5
345,176 - Synpcc7942_0352 0.58 +0.7
345,178 - Synpcc7942_0352 0.58 -0.1
345,203 + Synpcc7942_0352 0.62 +0.4
345,217 + Synpcc7942_0352 0.65 +0.6
345,220 - Synpcc7942_0352 0.65 +0.9
345,224 - Synpcc7942_0352 0.66 -0.3
345,226 + Synpcc7942_0352 0.66 +0.8
345,240 - Synpcc7942_0352 0.68 +0.3
345,281 + Synpcc7942_0352 0.75 -0.1
345,287 + Synpcc7942_0352 0.76 +0.8
345,292 + Synpcc7942_0352 0.77 -0.5
345,297 + Synpcc7942_0352 0.78 -1.4
345,301 + Synpcc7942_0352 0.78 +0.8
345,305 - Synpcc7942_0352 0.79 +0.9
345,372 - -0.1
345,388 - -0.5
345,403 + -0.4
345,403 + -1.1
345,403 + +0.5
345,411 - +0.5
345,438 + +0.9
345,441 - -0.5
345,451 - -0.9
345,458 + -0.1
345,476 - -0.7
345,519 - -0.8
345,552 - -1.1
345,578 + Synpcc7942_0353 0.11 -0.1
345,612 + Synpcc7942_0353 0.15 -1.1
345,612 + Synpcc7942_0353 0.15 -1.2
345,619 - Synpcc7942_0353 0.15 -0.6
345,634 + Synpcc7942_0353 0.17 +0.0
345,636 - Synpcc7942_0353 0.17 -1.5
345,688 + Synpcc7942_0353 0.23 +1.7
345,688 + Synpcc7942_0353 0.23 -0.5
345,688 + Synpcc7942_0353 0.23 -0.4
345,688 + Synpcc7942_0353 0.23 -0.6
345,688 + Synpcc7942_0353 0.23 -4.3
345,688 + Synpcc7942_0353 0.23 -0.6
345,696 - Synpcc7942_0353 0.23 -0.3
345,696 - Synpcc7942_0353 0.23 +0.6
345,696 - Synpcc7942_0353 0.23 +2.6
345,696 - Synpcc7942_0353 0.23 +1.4
345,704 + Synpcc7942_0353 0.24 +0.6
345,704 + Synpcc7942_0353 0.24 +0.9
345,712 - Synpcc7942_0353 0.25 +1.9
345,712 - Synpcc7942_0353 0.25 +0.6
345,719 + Synpcc7942_0353 0.26 +0.2
345,726 - Synpcc7942_0353 0.27 -1.5
345,728 + Synpcc7942_0353 0.27 -2.7
345,728 + Synpcc7942_0353 0.27 +2.1
345,736 - Synpcc7942_0353 0.28 +0.5
345,774 + Synpcc7942_0353 0.32 -0.6
345,836 - Synpcc7942_0353 0.38 -0.4
345,836 - Synpcc7942_0353 0.38 -0.1
345,870 + Synpcc7942_0353 0.42 +0.5
345,909 - -1.7
345,933 - Synpcc7942_0353 0.48 +0.7
345,946 - Synpcc7942_0353 0.49 +1.7
345,947 + Synpcc7942_0353 0.50 +0.4
345,947 + Synpcc7942_0353 0.50 -0.0
345,962 - Synpcc7942_0353 0.51 +1.9
345,967 + Synpcc7942_0353 0.52 +0.3
345,976 - Synpcc7942_0353 0.53 +0.9
345,987 + Synpcc7942_0353 0.54 +0.5
345,992 + Synpcc7942_0353 0.54 -0.5
345,992 + Synpcc7942_0353 0.54 +0.4
345,995 - Synpcc7942_0353 0.55 -2.4
346,000 + Synpcc7942_0353 0.55 +0.6
346,000 - Synpcc7942_0353 0.55 +0.5
346,000 - Synpcc7942_0353 0.55 +0.7
346,000 - Synpcc7942_0353 0.55 -1.4
346,000 - Synpcc7942_0353 0.55 +0.5
346,002 + Synpcc7942_0353 0.55 +1.1
346,002 + Synpcc7942_0353 0.55 -0.2
346,008 - Synpcc7942_0353 0.56 -2.9
346,010 - Synpcc7942_0353 0.56 -1.7
346,026 + Synpcc7942_0353 0.58 +1.7
346,043 + Synpcc7942_0353 0.60 +0.0
346,062 + Synpcc7942_0353 0.61 +0.4
346,072 + Synpcc7942_0353 0.63 -0.1
346,106 - Synpcc7942_0353 0.66 -0.1
346,106 - Synpcc7942_0353 0.66 -0.8
346,199 + Synpcc7942_0353 0.76 -0.1
346,275 - Synpcc7942_0353 0.84 +0.2
346,294 + Synpcc7942_0353 0.86 +0.4
346,390 - -0.1

Or see this region's nucleotide sequence