Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0226 and pth overlap by 4 nucleotides pth and Synpcc7942_0228 are separated by 28 nucleotides Synpcc7942_0228 and Synpcc7942_0229 are separated by 113 nucleotides Synpcc7942_0229 and Synpcc7942_0230 are separated by 41 nucleotides
Synpcc7942_0226: Synpcc7942_0226 - Sec-independent protein translocase TatA, at 224,357 to 224,632
_0226
Synpcc7942_0227: pth - peptidyl-tRNA hydrolase, at 224,629 to 225,255
pth
Synpcc7942_0228: Synpcc7942_0228 - hypothetical protein, at 225,284 to 225,544
_0228
Synpcc7942_0229: Synpcc7942_0229 - hypothetical protein, at 225,658 to 226,221
_0229
Synpcc7942_0230: Synpcc7942_0230 - hypothetical protein, at 226,263 to 227,309
_0230
Position (kb) 225
226 Strain fitness (log2 ratio) -2
-1
0
1
2 at 224.347 kb on + strand at 224.626 kb on + strand at 224.626 kb on + strand at 224.634 kb on - strand at 224.634 kb on - strand at 225.183 kb on + strand at 225.227 kb on + strand at 225.235 kb on - strand at 225.235 kb on - strand at 225.249 kb on + strand at 225.257 kb on - strand at 225.257 kb on - strand at 225.257 kb on - strand at 225.261 kb on + strand at 225.261 kb on + strand at 225.264 kb on - strand at 225.275 kb on + strand at 225.279 kb on - strand at 225.311 kb on + strand, within Synpcc7942_0228 at 225.319 kb on - strand, within Synpcc7942_0228 at 225.337 kb on - strand, within Synpcc7942_0228 at 225.359 kb on + strand, within Synpcc7942_0228 at 225.378 kb on + strand, within Synpcc7942_0228 at 225.398 kb on - strand, within Synpcc7942_0228 at 225.423 kb on + strand, within Synpcc7942_0228 at 225.425 kb on + strand, within Synpcc7942_0228 at 225.464 kb on + strand, within Synpcc7942_0228 at 225.500 kb on + strand, within Synpcc7942_0228 at 225.527 kb on - strand at 225.560 kb on + strand at 225.572 kb on + strand at 225.580 kb on - strand at 225.617 kb on - strand at 225.630 kb on + strand at 225.630 kb on + strand at 225.630 kb on + strand at 225.638 kb on - strand at 225.676 kb on + strand at 225.701 kb on + strand at 225.721 kb on + strand, within Synpcc7942_0229 at 225.723 kb on + strand, within Synpcc7942_0229 at 225.804 kb on + strand, within Synpcc7942_0229 at 225.814 kb on - strand, within Synpcc7942_0229 at 225.821 kb on - strand, within Synpcc7942_0229 at 226.010 kb on - strand, within Synpcc7942_0229 at 226.020 kb on - strand, within Synpcc7942_0229 at 226.093 kb on + strand, within Synpcc7942_0229 at 226.107 kb on - strand, within Synpcc7942_0229 at 226.121 kb on - strand, within Synpcc7942_0229 at 226.121 kb on - strand, within Synpcc7942_0229 at 226.160 kb on + strand, within Synpcc7942_0229 at 226.168 kb on - strand at 226.168 kb on - strand at 226.181 kb on - strand at 226.190 kb on + strand at 226.190 kb on + strand at 226.237 kb on + strand at 226.237 kb on + strand at 226.243 kb on + strand at 226.268 kb on - strand at 226.325 kb on + strand at 226.333 kb on - strand at 226.366 kb on + strand at 226.366 kb on - strand at 226.367 kb on - strand at 226.374 kb on - strand, within Synpcc7942_0230 at 226.374 kb on - strand, within Synpcc7942_0230 at 226.385 kb on - strand, within Synpcc7942_0230 at 226.412 kb on - strand, within Synpcc7942_0230 at 226.416 kb on - strand, within Synpcc7942_0230 at 226.416 kb on - strand, within Synpcc7942_0230 at 226.473 kb on - strand, within Synpcc7942_0230 at 226.473 kb on - strand, within Synpcc7942_0230 at 226.484 kb on + strand, within Synpcc7942_0230 at 226.492 kb on - strand, within Synpcc7942_0230 at 226.492 kb on - strand, within Synpcc7942_0230 at 226.492 kb on - strand, within Synpcc7942_0230 at 226.507 kb on + strand, within Synpcc7942_0230 at 226.515 kb on - strand, within Synpcc7942_0230
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 224,347 + +1.7 224,626 + +0.7 224,626 + -2.3 224,634 - +1.5 224,634 - +0.5 225,183 + -1.1 225,227 + -1.1 225,235 - +1.5 225,235 - -0.1 225,249 + -0.1 225,257 - +1.5 225,257 - -1.7 225,257 - +0.1 225,261 + -0.7 225,261 + +0.7 225,264 - +1.4 225,275 + +0.9 225,279 - +1.4 225,311 + Synpcc7942_0228 0.10 +0.9 225,319 - Synpcc7942_0228 0.13 +2.7 225,337 - Synpcc7942_0228 0.20 +0.1 225,359 + Synpcc7942_0228 0.29 +0.4 225,378 + Synpcc7942_0228 0.36 +1.5 225,398 - Synpcc7942_0228 0.44 -0.7 225,423 + Synpcc7942_0228 0.53 +0.4 225,425 + Synpcc7942_0228 0.54 -0.1 225,464 + Synpcc7942_0228 0.69 -1.1 225,500 + Synpcc7942_0228 0.83 +0.4 225,527 - +0.3 225,560 + -0.1 225,572 + +1.4 225,580 - -0.1 225,617 - +1.8 225,630 + -0.5 225,630 + -0.1 225,630 + +1.9 225,638 - -1.9 225,676 + +1.2 225,701 + +0.9 225,721 + Synpcc7942_0229 0.11 -0.2 225,723 + Synpcc7942_0229 0.12 -1.4 225,804 + Synpcc7942_0229 0.26 +0.8 225,814 - Synpcc7942_0229 0.28 +1.5 225,821 - Synpcc7942_0229 0.29 -0.3 226,010 - Synpcc7942_0229 0.62 -2.1 226,020 - Synpcc7942_0229 0.64 +1.1 226,093 + Synpcc7942_0229 0.77 +0.4 226,107 - Synpcc7942_0229 0.80 -2.1 226,121 - Synpcc7942_0229 0.82 +0.9 226,121 - Synpcc7942_0229 0.82 +1.3 226,160 + Synpcc7942_0229 0.89 +0.4 226,168 - +0.3 226,168 - -1.1 226,181 - -0.0 226,190 + -0.1 226,190 + -0.1 226,237 + -0.1 226,237 + +0.9 226,243 + -1.2 226,268 - +1.7 226,325 + +0.2 226,333 - -0.9 226,366 + -1.1 226,366 - -1.4 226,367 - +0.1 226,374 - Synpcc7942_0230 0.11 +1.8 226,374 - Synpcc7942_0230 0.11 +0.0 226,385 - Synpcc7942_0230 0.12 +0.1 226,412 - Synpcc7942_0230 0.14 -2.4 226,416 - Synpcc7942_0230 0.15 -0.1 226,416 - Synpcc7942_0230 0.15 -0.1 226,473 - Synpcc7942_0230 0.20 +1.5 226,473 - Synpcc7942_0230 0.20 -1.3 226,484 + Synpcc7942_0230 0.21 -1.5 226,492 - Synpcc7942_0230 0.22 +0.8 226,492 - Synpcc7942_0230 0.22 +1.3 226,492 - Synpcc7942_0230 0.22 +0.1 226,507 + Synpcc7942_0230 0.23 +0.7 226,515 - Synpcc7942_0230 0.24 +0.3
Or see this region's nucleotide sequence