Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ribD and Synpcc7942_0204 overlap by 8 nucleotides Synpcc7942_0204 and Synpcc7942_0205 are separated by 151 nucleotides
Synpcc7942_0203: ribD - 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 204,483 to 205,589
ribD
Synpcc7942_0204: Synpcc7942_0204 - hypothetical protein, at 205,582 to 206,046
_0204
Synpcc7942_0205: Synpcc7942_0205 - nicotinamide-nucleotide adenylyltransferase, at 206,198 to 207,214
_0205
Position (kb) 205
206
207 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 205.584 kb on + strand at 205.585 kb on + strand at 205.641 kb on + strand, within Synpcc7942_0204 at 205.649 kb on - strand, within Synpcc7942_0204 at 205.652 kb on + strand, within Synpcc7942_0204 at 205.663 kb on + strand, within Synpcc7942_0204 at 205.676 kb on + strand, within Synpcc7942_0204 at 205.703 kb on - strand, within Synpcc7942_0204 at 205.719 kb on + strand, within Synpcc7942_0204 at 205.732 kb on - strand, within Synpcc7942_0204 at 205.752 kb on + strand, within Synpcc7942_0204 at 205.789 kb on + strand, within Synpcc7942_0204 at 205.789 kb on + strand, within Synpcc7942_0204 at 205.803 kb on + strand, within Synpcc7942_0204 at 205.872 kb on - strand, within Synpcc7942_0204 at 205.893 kb on + strand, within Synpcc7942_0204 at 205.913 kb on - strand, within Synpcc7942_0204 at 205.939 kb on - strand, within Synpcc7942_0204 at 205.956 kb on + strand, within Synpcc7942_0204 at 205.966 kb on + strand, within Synpcc7942_0204 at 205.966 kb on + strand, within Synpcc7942_0204 at 205.992 kb on + strand at 206.000 kb on - strand at 206.003 kb on + strand at 206.072 kb on - strand at 206.084 kb on + strand at 206.092 kb on - strand at 206.133 kb on - strand at 206.164 kb on - strand at 206.263 kb on + strand at 206.371 kb on + strand, within Synpcc7942_0205 at 206.446 kb on - strand, within Synpcc7942_0205 at 206.550 kb on - strand, within Synpcc7942_0205 at 206.608 kb on - strand, within Synpcc7942_0205 at 206.637 kb on + strand, within Synpcc7942_0205 at 206.686 kb on + strand, within Synpcc7942_0205 at 206.772 kb on - strand, within Synpcc7942_0205 at 206.906 kb on + strand, within Synpcc7942_0205
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 205,584 + -0.1 205,585 + +0.4 205,641 + Synpcc7942_0204 0.13 -0.5 205,649 - Synpcc7942_0204 0.14 +0.3 205,652 + Synpcc7942_0204 0.15 -0.6 205,663 + Synpcc7942_0204 0.17 -0.1 205,676 + Synpcc7942_0204 0.20 +0.4 205,703 - Synpcc7942_0204 0.26 +0.4 205,719 + Synpcc7942_0204 0.29 -0.8 205,732 - Synpcc7942_0204 0.32 +0.4 205,752 + Synpcc7942_0204 0.37 +1.3 205,789 + Synpcc7942_0204 0.45 -0.1 205,789 + Synpcc7942_0204 0.45 +1.2 205,803 + Synpcc7942_0204 0.48 +0.9 205,872 - Synpcc7942_0204 0.62 -0.4 205,893 + Synpcc7942_0204 0.67 +0.2 205,913 - Synpcc7942_0204 0.71 +0.8 205,939 - Synpcc7942_0204 0.77 +1.3 205,956 + Synpcc7942_0204 0.80 +1.2 205,966 + Synpcc7942_0204 0.83 -0.1 205,966 + Synpcc7942_0204 0.83 +0.0 205,992 + -1.1 206,000 - -2.2 206,003 + +0.2 206,072 - +2.7 206,084 + -1.9 206,092 - -1.7 206,133 - -0.1 206,164 - -0.1 206,263 + -1.7 206,371 + Synpcc7942_0205 0.17 -2.9 206,446 - Synpcc7942_0205 0.24 -0.1 206,550 - Synpcc7942_0205 0.35 -1.9 206,608 - Synpcc7942_0205 0.40 -2.9 206,637 + Synpcc7942_0205 0.43 -4.0 206,686 + Synpcc7942_0205 0.48 -3.8 206,772 - Synpcc7942_0205 0.56 -4.2 206,906 + Synpcc7942_0205 0.70 -3.3
Or see this region's nucleotide sequence