Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0166 and tRNA-Met are separated by 95 nucleotides tRNA-Met and Synpcc7942_0167 are separated by 86 nucleotides Synpcc7942_0167 and Synpcc7942_0168 are separated by 139 nucleotides Synpcc7942_0168 and glnN are separated by 427 nucleotides
Synpcc7942_0166: Synpcc7942_0166 - hypothetical protein, at 165,483 to 166,436
_0166
Synpcc7942_R0028: tRNA-Met - tRNA-Met, at 166,532 to 166,608
tRNA-Met
Synpcc7942_0167: Synpcc7942_0167 - hypothetical protein, at 166,695 to 166,925
_0167
Synpcc7942_0168: Synpcc7942_0168 - hypothetical protein, at 167,065 to 167,748
_0168
Synpcc7942_0169: glnN - glutamate-ammonia ligase, glutamine synthetase type III, at 168,176 to 170,347
glnN
Position (kb) 167
168 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 166.067 kb on + strand, within Synpcc7942_0166 at 166.075 kb on - strand, within Synpcc7942_0166 at 166.087 kb on - strand, within Synpcc7942_0166 at 166.104 kb on - strand, within Synpcc7942_0166 at 166.121 kb on + strand, within Synpcc7942_0166 at 166.157 kb on + strand, within Synpcc7942_0166 at 166.173 kb on + strand, within Synpcc7942_0166 at 166.184 kb on + strand, within Synpcc7942_0166 at 166.227 kb on + strand, within Synpcc7942_0166 at 166.247 kb on - strand, within Synpcc7942_0166 at 166.252 kb on - strand, within Synpcc7942_0166 at 166.254 kb on + strand, within Synpcc7942_0166 at 166.274 kb on + strand, within Synpcc7942_0166 at 166.369 kb on - strand at 166.376 kb on + strand at 166.383 kb on + strand at 166.384 kb on + strand at 166.419 kb on + strand at 166.425 kb on + strand at 166.427 kb on - strand at 166.433 kb on - strand at 166.438 kb on - strand at 166.662 kb on - strand at 166.677 kb on - strand at 166.690 kb on + strand at 166.692 kb on + strand at 166.700 kb on - strand at 166.720 kb on + strand, within Synpcc7942_0167 at 166.720 kb on + strand, within Synpcc7942_0167 at 166.728 kb on - strand, within Synpcc7942_0167 at 166.738 kb on - strand, within Synpcc7942_0167 at 166.784 kb on - strand, within Synpcc7942_0167 at 166.837 kb on + strand, within Synpcc7942_0167 at 166.845 kb on - strand, within Synpcc7942_0167 at 166.845 kb on - strand, within Synpcc7942_0167 at 166.871 kb on + strand, within Synpcc7942_0167 at 166.927 kb on + strand at 166.927 kb on + strand at 166.927 kb on + strand at 166.935 kb on - strand at 166.935 kb on - strand at 166.949 kb on + strand at 166.949 kb on + strand at 166.954 kb on + strand at 166.962 kb on - strand at 166.972 kb on - strand at 166.979 kb on - strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.013 kb on - strand at 167.013 kb on - strand at 167.013 kb on - strand at 167.013 kb on - strand at 167.022 kb on + strand at 167.023 kb on - strand at 167.033 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.085 kb on + strand at 167.085 kb on + strand at 167.088 kb on - strand at 167.088 kb on - strand at 167.088 kb on - strand at 167.088 kb on - strand at 167.093 kb on - strand at 167.093 kb on - strand at 167.163 kb on - strand, within Synpcc7942_0168 at 167.178 kb on + strand, within Synpcc7942_0168 at 167.185 kb on - strand, within Synpcc7942_0168 at 167.205 kb on + strand, within Synpcc7942_0168 at 167.224 kb on - strand, within Synpcc7942_0168 at 167.241 kb on + strand, within Synpcc7942_0168 at 167.249 kb on + strand, within Synpcc7942_0168 at 167.249 kb on - strand, within Synpcc7942_0168 at 167.257 kb on - strand, within Synpcc7942_0168 at 167.278 kb on - strand, within Synpcc7942_0168 at 167.285 kb on + strand, within Synpcc7942_0168 at 167.312 kb on + strand at 167.340 kb on + strand, within Synpcc7942_0168 at 167.340 kb on + strand, within Synpcc7942_0168 at 167.340 kb on + strand, within Synpcc7942_0168 at 167.380 kb on - strand, within Synpcc7942_0168 at 167.380 kb on - strand, within Synpcc7942_0168 at 167.425 kb on + strand, within Synpcc7942_0168 at 167.432 kb on + strand, within Synpcc7942_0168 at 167.437 kb on + strand, within Synpcc7942_0168 at 167.440 kb on - strand, within Synpcc7942_0168 at 167.440 kb on - strand, within Synpcc7942_0168 at 167.440 kb on - strand, within Synpcc7942_0168 at 167.485 kb on + strand, within Synpcc7942_0168 at 167.493 kb on - strand, within Synpcc7942_0168 at 167.509 kb on + strand, within Synpcc7942_0168 at 167.519 kb on - strand, within Synpcc7942_0168 at 167.570 kb on + strand, within Synpcc7942_0168 at 167.594 kb on + strand, within Synpcc7942_0168 at 167.603 kb on - strand, within Synpcc7942_0168 at 167.611 kb on + strand, within Synpcc7942_0168 at 167.614 kb on + strand, within Synpcc7942_0168 at 167.657 kb on + strand, within Synpcc7942_0168 at 167.657 kb on + strand, within Synpcc7942_0168 at 167.665 kb on - strand, within Synpcc7942_0168 at 167.670 kb on - strand, within Synpcc7942_0168 at 167.682 kb on - strand at 167.689 kb on + strand at 167.690 kb on - strand at 167.758 kb on + strand at 167.771 kb on - strand at 167.792 kb on - strand at 167.826 kb on - strand at 167.844 kb on - strand at 168.053 kb on + strand at 168.101 kb on + strand at 168.104 kb on - strand at 168.142 kb on - strand at 168.180 kb on - strand at 168.194 kb on - strand at 168.196 kb on + strand at 168.199 kb on - strand at 168.212 kb on - strand at 168.245 kb on - strand at 168.245 kb on - strand at 168.263 kb on - strand at 168.263 kb on - strand at 168.265 kb on + strand at 168.282 kb on + strand at 168.282 kb on + strand at 168.282 kb on + strand at 168.282 kb on + strand at 168.287 kb on + strand at 168.290 kb on - strand at 168.292 kb on + strand at 168.310 kb on + strand at 168.313 kb on + strand at 168.313 kb on + strand at 168.313 kb on + strand at 168.313 kb on + strand at 168.313 kb on + strand at 168.313 kb on + strand at 168.313 kb on + strand at 168.321 kb on - strand at 168.321 kb on - strand at 168.321 kb on - strand at 168.321 kb on - strand at 168.321 kb on - strand at 168.321 kb on - strand at 168.343 kb on - strand at 168.346 kb on - strand at 168.366 kb on - strand at 168.377 kb on - strand at 168.414 kb on - strand, within glnN at 168.418 kb on + strand, within glnN at 168.426 kb on - strand, within glnN at 168.433 kb on + strand, within glnN at 168.448 kb on + strand, within glnN at 168.448 kb on + strand, within glnN at 168.456 kb on - strand, within glnN at 168.463 kb on - strand, within glnN at 168.508 kb on - strand, within glnN at 168.517 kb on + strand, within glnN at 168.556 kb on - strand, within glnN at 168.567 kb on + strand, within glnN at 168.600 kb on + strand, within glnN at 168.608 kb on - strand, within glnN at 168.608 kb on - strand, within glnN at 168.608 kb on - strand, within glnN at 168.621 kb on - strand, within glnN at 168.621 kb on - strand, within glnN at 168.632 kb on - strand, within glnN at 168.632 kb on - strand, within glnN at 168.632 kb on - strand, within glnN at 168.638 kb on + strand, within glnN at 168.643 kb on + strand, within glnN at 168.644 kb on + strand, within glnN at 168.651 kb on - strand, within glnN at 168.651 kb on - strand, within glnN at 168.700 kb on + strand, within glnN at 168.700 kb on + strand, within glnN at 168.708 kb on - strand, within glnN at 168.710 kb on + strand, within glnN
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 166,067 + Synpcc7942_0166 0.61 -2.2 166,075 - Synpcc7942_0166 0.62 +1.2 166,087 - Synpcc7942_0166 0.63 -2.1 166,104 - Synpcc7942_0166 0.65 -1.1 166,121 + Synpcc7942_0166 0.67 +0.9 166,157 + Synpcc7942_0166 0.71 -2.1 166,173 + Synpcc7942_0166 0.72 -1.1 166,184 + Synpcc7942_0166 0.73 -0.5 166,227 + Synpcc7942_0166 0.78 -2.4 166,247 - Synpcc7942_0166 0.80 -2.4 166,252 - Synpcc7942_0166 0.81 -2.4 166,254 + Synpcc7942_0166 0.81 -1.7 166,274 + Synpcc7942_0166 0.83 -0.1 166,369 - -2.9 166,376 + -0.8 166,383 + -2.9 166,384 + -2.1 166,419 + +2.2 166,425 + -2.1 166,427 - +0.4 166,433 - +1.2 166,438 - -1.1 166,662 - -0.1 166,677 - +0.8 166,690 + +0.1 166,692 + +0.7 166,700 - -0.1 166,720 + Synpcc7942_0167 0.11 +0.2 166,720 + Synpcc7942_0167 0.11 -0.1 166,728 - Synpcc7942_0167 0.14 -0.5 166,738 - Synpcc7942_0167 0.19 +0.3 166,784 - Synpcc7942_0167 0.39 +0.9 166,837 + Synpcc7942_0167 0.61 -0.6 166,845 - Synpcc7942_0167 0.65 -0.1 166,845 - Synpcc7942_0167 0.65 -0.1 166,871 + Synpcc7942_0167 0.76 -0.4 166,927 + +1.1 166,927 + -0.9 166,927 + -0.2 166,935 - -0.0 166,935 - -0.6 166,949 + -1.1 166,949 + -1.4 166,954 + -0.9 166,962 - -2.9 166,972 - -0.5 166,979 - -0.1 167,005 + -0.1 167,005 + +1.9 167,005 + +1.1 167,005 + -0.1 167,005 + -0.1 167,005 + -0.5 167,013 - -0.5 167,013 - +0.4 167,013 - -1.1 167,013 - -0.1 167,022 + +0.5 167,023 - -0.1 167,033 + +0.9 167,080 + -2.0 167,080 + -1.5 167,080 + -2.6 167,080 + -2.4 167,080 + -3.0 167,080 + -1.5 167,080 + -3.0 167,085 + -1.6 167,085 + -0.8 167,088 - -0.3 167,088 - +0.8 167,088 - -0.8 167,088 - -0.7 167,093 - -1.1 167,093 - -2.3 167,163 - Synpcc7942_0168 0.14 -3.1 167,178 + Synpcc7942_0168 0.17 -1.9 167,185 - Synpcc7942_0168 0.18 -2.1 167,205 + Synpcc7942_0168 0.20 -2.5 167,224 - Synpcc7942_0168 0.23 -1.1 167,241 + Synpcc7942_0168 0.26 -3.4 167,249 + Synpcc7942_0168 0.27 -0.9 167,249 - Synpcc7942_0168 0.27 -2.1 167,257 - Synpcc7942_0168 0.28 -1.5 167,278 - Synpcc7942_0168 0.31 -2.2 167,285 + Synpcc7942_0168 0.32 -0.9 167,312 + -1.1 167,340 + Synpcc7942_0168 0.40 -1.5 167,340 + Synpcc7942_0168 0.40 -1.6 167,340 + Synpcc7942_0168 0.40 -2.0 167,380 - Synpcc7942_0168 0.46 -1.7 167,380 - Synpcc7942_0168 0.46 -2.3 167,425 + Synpcc7942_0168 0.53 +1.5 167,432 + Synpcc7942_0168 0.54 -2.6 167,437 + Synpcc7942_0168 0.54 -1.4 167,440 - Synpcc7942_0168 0.55 -2.4 167,440 - Synpcc7942_0168 0.55 -1.6 167,440 - Synpcc7942_0168 0.55 -2.8 167,485 + Synpcc7942_0168 0.61 -2.2 167,493 - Synpcc7942_0168 0.63 -2.2 167,509 + Synpcc7942_0168 0.65 -1.2 167,519 - Synpcc7942_0168 0.66 -2.2 167,570 + Synpcc7942_0168 0.74 -0.9 167,594 + Synpcc7942_0168 0.77 -1.4 167,603 - Synpcc7942_0168 0.79 -2.4 167,611 + Synpcc7942_0168 0.80 -0.6 167,614 + Synpcc7942_0168 0.80 -1.5 167,657 + Synpcc7942_0168 0.87 +2.9 167,657 + Synpcc7942_0168 0.87 -0.1 167,665 - Synpcc7942_0168 0.88 +0.9 167,670 - Synpcc7942_0168 0.88 -1.4 167,682 - +0.8 167,689 + -0.1 167,690 - -0.1 167,758 + +0.6 167,771 - +0.2 167,792 - +0.9 167,826 - +1.3 167,844 - +0.8 168,053 + +0.9 168,101 + +0.5 168,104 - -0.7 168,142 - +2.0 168,180 - -0.9 168,194 - -0.7 168,196 + +1.5 168,199 - +0.1 168,212 - +1.2 168,245 - -0.1 168,245 - -0.5 168,263 - +0.4 168,263 - -1.1 168,265 + -0.1 168,282 + +0.2 168,282 + +0.4 168,282 + -2.7 168,282 + -0.1 168,287 + +0.7 168,290 - +0.0 168,292 + -0.4 168,310 + -1.0 168,313 + -0.5 168,313 + +1.3 168,313 + +0.5 168,313 + -0.3 168,313 + +0.9 168,313 + -0.7 168,313 + +0.3 168,321 - +0.8 168,321 - -0.5 168,321 - +0.6 168,321 - -0.7 168,321 - +0.2 168,321 - +0.5 168,343 - +0.5 168,346 - +1.9 168,366 - -0.8 168,377 - -0.9 168,414 - glnN Synpcc7942_0169 0.11 +0.1 168,418 + glnN Synpcc7942_0169 0.11 +0.1 168,426 - glnN Synpcc7942_0169 0.12 -0.6 168,433 + glnN Synpcc7942_0169 0.12 +0.7 168,448 + glnN Synpcc7942_0169 0.13 +0.7 168,448 + glnN Synpcc7942_0169 0.13 -2.7 168,456 - glnN Synpcc7942_0169 0.13 -1.3 168,463 - glnN Synpcc7942_0169 0.13 -0.8 168,508 - glnN Synpcc7942_0169 0.15 -1.9 168,517 + glnN Synpcc7942_0169 0.16 -2.4 168,556 - glnN Synpcc7942_0169 0.17 +0.2 168,567 + glnN Synpcc7942_0169 0.18 -0.1 168,600 + glnN Synpcc7942_0169 0.20 +0.1 168,608 - glnN Synpcc7942_0169 0.20 -2.1 168,608 - glnN Synpcc7942_0169 0.20 +0.8 168,608 - glnN Synpcc7942_0169 0.20 -0.9 168,621 - glnN Synpcc7942_0169 0.20 -0.6 168,621 - glnN Synpcc7942_0169 0.20 -0.4 168,632 - glnN Synpcc7942_0169 0.21 -0.9 168,632 - glnN Synpcc7942_0169 0.21 +1.2 168,632 - glnN Synpcc7942_0169 0.21 +0.5 168,638 + glnN Synpcc7942_0169 0.21 -1.1 168,643 + glnN Synpcc7942_0169 0.22 -1.0 168,644 + glnN Synpcc7942_0169 0.22 -2.1 168,651 - glnN Synpcc7942_0169 0.22 -2.9 168,651 - glnN Synpcc7942_0169 0.22 -1.1 168,700 + glnN Synpcc7942_0169 0.24 +2.2 168,700 + glnN Synpcc7942_0169 0.24 +0.2 168,708 - glnN Synpcc7942_0169 0.24 -0.8 168,710 + glnN Synpcc7942_0169 0.25 +0.1
Or see this region's nucleotide sequence