Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0163 and Synpcc7942_0164 are separated by 37 nucleotides Synpcc7942_0164 and ycf36 are separated by 18 nucleotides ycf36 and Synpcc7942_0166 overlap by 4 nucleotides Synpcc7942_0166 and tRNA-Met are separated by 95 nucleotides tRNA-Met and Synpcc7942_0167 are separated by 86 nucleotides Synpcc7942_0167 and Synpcc7942_0168 are separated by 139 nucleotides
Synpcc7942_0163: Synpcc7942_0163 - hypothetical protein, at 163,761 to 164,510
_0163
Synpcc7942_0164: Synpcc7942_0164 - Iojap-related protein, at 164,548 to 164,967
_0164
Synpcc7942_0165: ycf36 - hypothetical protein, at 164,986 to 165,486
ycf36
Synpcc7942_0166: Synpcc7942_0166 - hypothetical protein, at 165,483 to 166,436
_0166
Synpcc7942_R0028: tRNA-Met - tRNA-Met, at 166,532 to 166,608
tRNA-Met
Synpcc7942_0167: Synpcc7942_0167 - hypothetical protein, at 166,695 to 166,925
_0167
Synpcc7942_0168: Synpcc7942_0168 - hypothetical protein, at 167,065 to 167,748
_0168
Position (kb) 165
166
167 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 164.484 kb on - strand at 164.497 kb on - strand at 164.499 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.500 kb on + strand at 164.508 kb on - strand at 164.508 kb on - strand at 164.508 kb on - strand at 164.510 kb on + strand at 164.513 kb on - strand at 164.517 kb on + strand at 164.525 kb on - strand at 164.551 kb on + strand at 164.551 kb on + strand at 164.559 kb on - strand at 164.559 kb on - strand at 164.559 kb on - strand at 164.598 kb on + strand, within Synpcc7942_0164 at 164.598 kb on + strand, within Synpcc7942_0164 at 164.601 kb on - strand, within Synpcc7942_0164 at 164.607 kb on - strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.666 kb on + strand, within Synpcc7942_0164 at 164.674 kb on - strand, within Synpcc7942_0164 at 164.674 kb on - strand, within Synpcc7942_0164 at 164.676 kb on + strand, within Synpcc7942_0164 at 164.795 kb on + strand, within Synpcc7942_0164 at 164.803 kb on - strand, within Synpcc7942_0164 at 164.816 kb on + strand, within Synpcc7942_0164 at 164.824 kb on - strand, within Synpcc7942_0164 at 164.832 kb on - strand, within Synpcc7942_0164 at 164.832 kb on - strand at 164.832 kb on - strand, within Synpcc7942_0164 at 164.914 kb on - strand, within Synpcc7942_0164 at 164.939 kb on + strand at 164.954 kb on + strand at 164.994 kb on + strand at 165.029 kb on - strand at 165.035 kb on + strand at 165.051 kb on - strand, within ycf36 at 165.069 kb on + strand, within ycf36 at 165.072 kb on - strand, within ycf36 at 165.090 kb on - strand at 165.090 kb on - strand, within ycf36 at 165.093 kb on + strand, within ycf36 at 165.096 kb on - strand, within ycf36 at 165.098 kb on + strand, within ycf36 at 165.100 kb on - strand, within ycf36 at 165.105 kb on + strand, within ycf36 at 165.113 kb on + strand, within ycf36 at 165.113 kb on - strand, within ycf36 at 165.118 kb on + strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.126 kb on - strand, within ycf36 at 165.137 kb on - strand, within ycf36 at 165.142 kb on - strand, within ycf36 at 165.178 kb on + strand, within ycf36 at 165.179 kb on + strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.186 kb on - strand, within ycf36 at 165.195 kb on + strand, within ycf36 at 165.209 kb on + strand, within ycf36 at 165.254 kb on - strand, within ycf36 at 165.288 kb on + strand, within ycf36 at 165.296 kb on - strand, within ycf36 at 165.312 kb on - strand, within ycf36 at 165.367 kb on + strand, within ycf36 at 165.452 kb on - strand at 165.468 kb on + strand at 165.508 kb on - strand at 165.593 kb on - strand, within Synpcc7942_0166 at 165.602 kb on + strand, within Synpcc7942_0166 at 165.602 kb on + strand, within Synpcc7942_0166 at 165.618 kb on + strand, within Synpcc7942_0166 at 165.634 kb on - strand, within Synpcc7942_0166 at 165.655 kb on - strand, within Synpcc7942_0166 at 165.662 kb on + strand, within Synpcc7942_0166 at 165.662 kb on + strand, within Synpcc7942_0166 at 165.674 kb on + strand, within Synpcc7942_0166 at 165.688 kb on - strand, within Synpcc7942_0166 at 165.697 kb on + strand, within Synpcc7942_0166 at 165.697 kb on + strand, within Synpcc7942_0166 at 165.705 kb on - strand, within Synpcc7942_0166 at 165.820 kb on + strand, within Synpcc7942_0166 at 165.834 kb on - strand, within Synpcc7942_0166 at 165.839 kb on + strand, within Synpcc7942_0166 at 165.846 kb on + strand, within Synpcc7942_0166 at 165.846 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on + strand, within Synpcc7942_0166 at 165.852 kb on - strand, within Synpcc7942_0166 at 165.855 kb on - strand, within Synpcc7942_0166 at 165.860 kb on - strand, within Synpcc7942_0166 at 165.892 kb on + strand, within Synpcc7942_0166 at 165.905 kb on + strand, within Synpcc7942_0166 at 166.021 kb on + strand, within Synpcc7942_0166 at 166.029 kb on + strand, within Synpcc7942_0166 at 166.067 kb on + strand, within Synpcc7942_0166 at 166.075 kb on - strand, within Synpcc7942_0166 at 166.087 kb on - strand, within Synpcc7942_0166 at 166.104 kb on - strand, within Synpcc7942_0166 at 166.121 kb on + strand, within Synpcc7942_0166 at 166.157 kb on + strand, within Synpcc7942_0166 at 166.173 kb on + strand, within Synpcc7942_0166 at 166.184 kb on + strand, within Synpcc7942_0166 at 166.227 kb on + strand, within Synpcc7942_0166 at 166.247 kb on - strand, within Synpcc7942_0166 at 166.252 kb on - strand, within Synpcc7942_0166 at 166.254 kb on + strand, within Synpcc7942_0166 at 166.274 kb on + strand, within Synpcc7942_0166 at 166.369 kb on - strand at 166.376 kb on + strand at 166.383 kb on + strand at 166.384 kb on + strand at 166.419 kb on + strand at 166.425 kb on + strand at 166.427 kb on - strand at 166.433 kb on - strand at 166.438 kb on - strand at 166.662 kb on - strand at 166.677 kb on - strand at 166.690 kb on + strand at 166.692 kb on + strand at 166.700 kb on - strand at 166.720 kb on + strand, within Synpcc7942_0167 at 166.720 kb on + strand, within Synpcc7942_0167 at 166.728 kb on - strand, within Synpcc7942_0167 at 166.738 kb on - strand, within Synpcc7942_0167 at 166.784 kb on - strand, within Synpcc7942_0167 at 166.837 kb on + strand, within Synpcc7942_0167 at 166.845 kb on - strand, within Synpcc7942_0167 at 166.845 kb on - strand, within Synpcc7942_0167 at 166.871 kb on + strand, within Synpcc7942_0167 at 166.927 kb on + strand at 166.927 kb on + strand at 166.927 kb on + strand at 166.935 kb on - strand at 166.935 kb on - strand at 166.949 kb on + strand at 166.949 kb on + strand at 166.954 kb on + strand at 166.962 kb on - strand at 166.972 kb on - strand at 166.979 kb on - strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.005 kb on + strand at 167.013 kb on - strand at 167.013 kb on - strand at 167.013 kb on - strand at 167.013 kb on - strand at 167.022 kb on + strand at 167.023 kb on - strand at 167.033 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.080 kb on + strand at 167.085 kb on + strand at 167.085 kb on + strand at 167.088 kb on - strand at 167.088 kb on - strand at 167.088 kb on - strand at 167.088 kb on - strand at 167.093 kb on - strand at 167.093 kb on - strand at 167.163 kb on - strand, within Synpcc7942_0168 at 167.178 kb on + strand, within Synpcc7942_0168 at 167.185 kb on - strand, within Synpcc7942_0168 at 167.205 kb on + strand, within Synpcc7942_0168 at 167.224 kb on - strand, within Synpcc7942_0168 at 167.241 kb on + strand, within Synpcc7942_0168 at 167.249 kb on + strand, within Synpcc7942_0168 at 167.249 kb on - strand, within Synpcc7942_0168 at 167.257 kb on - strand, within Synpcc7942_0168 at 167.278 kb on - strand, within Synpcc7942_0168 at 167.285 kb on + strand, within Synpcc7942_0168 at 167.312 kb on + strand at 167.340 kb on + strand, within Synpcc7942_0168 at 167.340 kb on + strand, within Synpcc7942_0168 at 167.340 kb on + strand, within Synpcc7942_0168 at 167.380 kb on - strand, within Synpcc7942_0168 at 167.380 kb on - strand, within Synpcc7942_0168 at 167.425 kb on + strand, within Synpcc7942_0168 at 167.432 kb on + strand, within Synpcc7942_0168
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 164,484 - -1.0 164,497 - +3.2 164,499 + +0.6 164,500 + -0.1 164,500 + -0.1 164,500 + -0.5 164,500 + -1.3 164,500 + +0.9 164,500 + +0.3 164,508 - -0.5 164,508 - -1.7 164,508 - -0.7 164,510 + +0.2 164,513 - +0.5 164,517 + +0.6 164,525 - -1.1 164,551 + +1.1 164,551 + -0.1 164,559 - +1.0 164,559 - -2.1 164,559 - -1.5 164,598 + Synpcc7942_0164 0.12 +1.5 164,598 + Synpcc7942_0164 0.12 +2.5 164,601 - Synpcc7942_0164 0.13 +0.6 164,607 - Synpcc7942_0164 0.14 -0.3 164,666 + Synpcc7942_0164 0.28 +0.9 164,666 + Synpcc7942_0164 0.28 +1.9 164,666 + Synpcc7942_0164 0.28 -1.2 164,674 - Synpcc7942_0164 0.30 +1.1 164,674 - Synpcc7942_0164 0.30 -1.1 164,676 + Synpcc7942_0164 0.30 -0.1 164,795 + Synpcc7942_0164 0.59 -0.6 164,803 - Synpcc7942_0164 0.61 +1.3 164,816 + Synpcc7942_0164 0.64 -1.3 164,824 - Synpcc7942_0164 0.66 +0.4 164,832 - Synpcc7942_0164 0.68 -1.3 164,832 - -1.1 164,832 - Synpcc7942_0164 0.68 +0.9 164,914 - Synpcc7942_0164 0.87 -0.8 164,939 + -0.0 164,954 + -0.0 164,994 + +0.5 165,029 - -1.1 165,035 + -1.1 165,051 - ycf36 Synpcc7942_0165 0.13 -2.7 165,069 + ycf36 Synpcc7942_0165 0.17 +0.9 165,072 - ycf36 Synpcc7942_0165 0.17 +0.3 165,090 - -0.1 165,090 - ycf36 Synpcc7942_0165 0.21 +0.2 165,093 + ycf36 Synpcc7942_0165 0.21 -1.5 165,096 - ycf36 Synpcc7942_0165 0.22 +1.2 165,098 + ycf36 Synpcc7942_0165 0.22 -0.7 165,100 - ycf36 Synpcc7942_0165 0.23 +0.4 165,105 + ycf36 Synpcc7942_0165 0.24 +0.5 165,113 + ycf36 Synpcc7942_0165 0.25 +0.3 165,113 - ycf36 Synpcc7942_0165 0.25 -0.2 165,118 + ycf36 Synpcc7942_0165 0.26 -2.1 165,126 - ycf36 Synpcc7942_0165 0.28 -0.1 165,126 - ycf36 Synpcc7942_0165 0.28 +0.4 165,126 - ycf36 Synpcc7942_0165 0.28 -2.4 165,137 - ycf36 Synpcc7942_0165 0.30 -0.9 165,142 - ycf36 Synpcc7942_0165 0.31 +1.5 165,178 + ycf36 Synpcc7942_0165 0.38 -1.3 165,179 + ycf36 Synpcc7942_0165 0.39 -0.6 165,186 - ycf36 Synpcc7942_0165 0.40 +0.2 165,186 - ycf36 Synpcc7942_0165 0.40 +1.1 165,186 - ycf36 Synpcc7942_0165 0.40 -0.7 165,195 + ycf36 Synpcc7942_0165 0.42 +1.7 165,209 + ycf36 Synpcc7942_0165 0.45 -0.8 165,254 - ycf36 Synpcc7942_0165 0.53 -2.9 165,288 + ycf36 Synpcc7942_0165 0.60 -2.1 165,296 - ycf36 Synpcc7942_0165 0.62 -0.3 165,312 - ycf36 Synpcc7942_0165 0.65 -0.1 165,367 + ycf36 Synpcc7942_0165 0.76 -1.6 165,452 - -0.5 165,468 + -0.9 165,508 - -0.2 165,593 - Synpcc7942_0166 0.12 +0.9 165,602 + Synpcc7942_0166 0.12 -1.4 165,602 + Synpcc7942_0166 0.12 -2.7 165,618 + Synpcc7942_0166 0.14 -4.3 165,634 - Synpcc7942_0166 0.16 -2.9 165,655 - Synpcc7942_0166 0.18 -3.1 165,662 + Synpcc7942_0166 0.19 -2.0 165,662 + Synpcc7942_0166 0.19 -2.7 165,674 + Synpcc7942_0166 0.20 -1.5 165,688 - Synpcc7942_0166 0.21 -0.4 165,697 + Synpcc7942_0166 0.22 +0.3 165,697 + Synpcc7942_0166 0.22 -1.1 165,705 - Synpcc7942_0166 0.23 -2.9 165,820 + Synpcc7942_0166 0.35 -2.4 165,834 - Synpcc7942_0166 0.37 -1.7 165,839 + Synpcc7942_0166 0.37 -3.4 165,846 + Synpcc7942_0166 0.38 -2.7 165,846 + Synpcc7942_0166 0.38 -3.4 165,852 + Synpcc7942_0166 0.39 -2.0 165,852 + Synpcc7942_0166 0.39 -2.7 165,852 + Synpcc7942_0166 0.39 -1.4 165,852 - Synpcc7942_0166 0.39 -0.1 165,855 - Synpcc7942_0166 0.39 -2.7 165,860 - Synpcc7942_0166 0.40 +1.7 165,892 + Synpcc7942_0166 0.43 -2.1 165,905 + Synpcc7942_0166 0.44 -0.4 166,021 + Synpcc7942_0166 0.56 -2.1 166,029 + Synpcc7942_0166 0.57 -2.7 166,067 + Synpcc7942_0166 0.61 -2.2 166,075 - Synpcc7942_0166 0.62 +1.2 166,087 - Synpcc7942_0166 0.63 -2.1 166,104 - Synpcc7942_0166 0.65 -1.1 166,121 + Synpcc7942_0166 0.67 +0.9 166,157 + Synpcc7942_0166 0.71 -2.1 166,173 + Synpcc7942_0166 0.72 -1.1 166,184 + Synpcc7942_0166 0.73 -0.5 166,227 + Synpcc7942_0166 0.78 -2.4 166,247 - Synpcc7942_0166 0.80 -2.4 166,252 - Synpcc7942_0166 0.81 -2.4 166,254 + Synpcc7942_0166 0.81 -1.7 166,274 + Synpcc7942_0166 0.83 -0.1 166,369 - -2.9 166,376 + -0.8 166,383 + -2.9 166,384 + -2.1 166,419 + +2.2 166,425 + -2.1 166,427 - +0.4 166,433 - +1.2 166,438 - -1.1 166,662 - -0.1 166,677 - +0.8 166,690 + +0.1 166,692 + +0.7 166,700 - -0.1 166,720 + Synpcc7942_0167 0.11 +0.2 166,720 + Synpcc7942_0167 0.11 -0.1 166,728 - Synpcc7942_0167 0.14 -0.5 166,738 - Synpcc7942_0167 0.19 +0.3 166,784 - Synpcc7942_0167 0.39 +0.9 166,837 + Synpcc7942_0167 0.61 -0.6 166,845 - Synpcc7942_0167 0.65 -0.1 166,845 - Synpcc7942_0167 0.65 -0.1 166,871 + Synpcc7942_0167 0.76 -0.4 166,927 + +1.1 166,927 + -0.9 166,927 + -0.2 166,935 - -0.0 166,935 - -0.6 166,949 + -1.1 166,949 + -1.4 166,954 + -0.9 166,962 - -2.9 166,972 - -0.5 166,979 - -0.1 167,005 + -0.1 167,005 + +1.9 167,005 + +1.1 167,005 + -0.1 167,005 + -0.1 167,005 + -0.5 167,013 - -0.5 167,013 - +0.4 167,013 - -1.1 167,013 - -0.1 167,022 + +0.5 167,023 - -0.1 167,033 + +0.9 167,080 + -2.0 167,080 + -1.5 167,080 + -2.6 167,080 + -2.4 167,080 + -3.0 167,080 + -1.5 167,080 + -3.0 167,085 + -1.6 167,085 + -0.8 167,088 - -0.3 167,088 - +0.8 167,088 - -0.8 167,088 - -0.7 167,093 - -1.1 167,093 - -2.3 167,163 - Synpcc7942_0168 0.14 -3.1 167,178 + Synpcc7942_0168 0.17 -1.9 167,185 - Synpcc7942_0168 0.18 -2.1 167,205 + Synpcc7942_0168 0.20 -2.5 167,224 - Synpcc7942_0168 0.23 -1.1 167,241 + Synpcc7942_0168 0.26 -3.4 167,249 + Synpcc7942_0168 0.27 -0.9 167,249 - Synpcc7942_0168 0.27 -2.1 167,257 - Synpcc7942_0168 0.28 -1.5 167,278 - Synpcc7942_0168 0.31 -2.2 167,285 + Synpcc7942_0168 0.32 -0.9 167,312 + -1.1 167,340 + Synpcc7942_0168 0.40 -1.5 167,340 + Synpcc7942_0168 0.40 -1.6 167,340 + Synpcc7942_0168 0.40 -2.0 167,380 - Synpcc7942_0168 0.46 -1.7 167,380 - Synpcc7942_0168 0.46 -2.3 167,425 + Synpcc7942_0168 0.53 +1.5 167,432 + Synpcc7942_0168 0.54 -2.6
Or see this region's nucleotide sequence