Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0128 and Synpcc7942_0129 overlap by 4 nucleotides Synpcc7942_0129 and Synpcc7942_0130 overlap by 56 nucleotides Synpcc7942_0130 and Synpcc7942_0131 are separated by 260 nucleotides
Synpcc7942_0128: Synpcc7942_0128 - hypothetical protein, at 127,151 to 128,449
_0128
Synpcc7942_0129: Synpcc7942_0129 - Resolvase, RNase H-like fold, at 128,446 to 128,877
_0129
Synpcc7942_0130: Synpcc7942_0130 - hypothetical protein, at 128,822 to 129,409
_0130
Synpcc7942_0131: Synpcc7942_0131 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 129,670 to 132,495
_0131
Position (kb) 128
129 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 127.528 kb on - strand, within Synpcc7942_0128 at 127.642 kb on - strand, within Synpcc7942_0128 at 127.674 kb on + strand, within Synpcc7942_0128 at 127.692 kb on - strand, within Synpcc7942_0128 at 127.718 kb on + strand, within Synpcc7942_0128 at 127.745 kb on + strand, within Synpcc7942_0128 at 127.819 kb on + strand, within Synpcc7942_0128 at 127.847 kb on + strand, within Synpcc7942_0128 at 127.850 kb on - strand, within Synpcc7942_0128 at 127.888 kb on - strand, within Synpcc7942_0128 at 127.888 kb on - strand, within Synpcc7942_0128 at 127.898 kb on - strand, within Synpcc7942_0128 at 127.930 kb on - strand, within Synpcc7942_0128 at 127.959 kb on + strand, within Synpcc7942_0128 at 128.021 kb on + strand, within Synpcc7942_0128 at 128.171 kb on - strand, within Synpcc7942_0128 at 128.192 kb on - strand, within Synpcc7942_0128 at 128.213 kb on - strand, within Synpcc7942_0128 at 128.219 kb on - strand, within Synpcc7942_0128 at 128.221 kb on + strand, within Synpcc7942_0128 at 128.267 kb on + strand at 128.310 kb on + strand, within Synpcc7942_0128 at 128.326 kb on - strand at 128.381 kb on + strand at 128.429 kb on - strand at 128.443 kb on + strand at 128.443 kb on + strand at 128.443 kb on + strand at 128.443 kb on + strand at 128.443 kb on + strand at 128.451 kb on - strand at 128.451 kb on - strand at 128.451 kb on - strand at 128.451 kb on - strand at 128.453 kb on + strand at 128.461 kb on - strand at 128.471 kb on - strand at 128.482 kb on - strand at 128.611 kb on + strand, within Synpcc7942_0129 at 128.653 kb on + strand, within Synpcc7942_0129 at 128.659 kb on + strand, within Synpcc7942_0129 at 128.670 kb on + strand, within Synpcc7942_0129 at 128.711 kb on - strand, within Synpcc7942_0129 at 128.722 kb on - strand, within Synpcc7942_0129 at 128.750 kb on - strand, within Synpcc7942_0129 at 128.784 kb on - strand, within Synpcc7942_0129 at 128.843 kb on + strand at 128.907 kb on + strand, within Synpcc7942_0130 at 128.915 kb on - strand, within Synpcc7942_0130 at 128.920 kb on - strand, within Synpcc7942_0130 at 128.941 kb on - strand, within Synpcc7942_0130 at 128.977 kb on - strand, within Synpcc7942_0130 at 129.018 kb on - strand, within Synpcc7942_0130 at 129.031 kb on + strand, within Synpcc7942_0130 at 129.033 kb on + strand, within Synpcc7942_0130 at 129.051 kb on - strand, within Synpcc7942_0130 at 129.102 kb on + strand, within Synpcc7942_0130 at 129.122 kb on - strand, within Synpcc7942_0130 at 129.210 kb on - strand, within Synpcc7942_0130 at 129.224 kb on + strand, within Synpcc7942_0130 at 129.229 kb on + strand, within Synpcc7942_0130 at 129.231 kb on - strand, within Synpcc7942_0130 at 129.243 kb on + strand, within Synpcc7942_0130 at 129.251 kb on - strand, within Synpcc7942_0130 at 129.252 kb on + strand, within Synpcc7942_0130 at 129.323 kb on - strand, within Synpcc7942_0130 at 129.330 kb on - strand, within Synpcc7942_0130 at 129.332 kb on + strand, within Synpcc7942_0130 at 129.369 kb on - strand at 129.404 kb on + strand at 129.424 kb on - strand at 129.488 kb on - strand at 129.859 kb on - strand at 129.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 127,528 - Synpcc7942_0128 0.29 -3.1 127,642 - Synpcc7942_0128 0.38 -1.4 127,674 + Synpcc7942_0128 0.40 -1.7 127,692 - Synpcc7942_0128 0.42 -1.7 127,718 + Synpcc7942_0128 0.44 -1.3 127,745 + Synpcc7942_0128 0.46 -2.9 127,819 + Synpcc7942_0128 0.51 -2.4 127,847 + Synpcc7942_0128 0.54 -1.6 127,850 - Synpcc7942_0128 0.54 -3.4 127,888 - Synpcc7942_0128 0.57 -1.1 127,888 - Synpcc7942_0128 0.57 -2.7 127,898 - Synpcc7942_0128 0.58 -2.4 127,930 - Synpcc7942_0128 0.60 -2.9 127,959 + Synpcc7942_0128 0.62 -1.5 128,021 + Synpcc7942_0128 0.67 -1.7 128,171 - Synpcc7942_0128 0.79 -2.1 128,192 - Synpcc7942_0128 0.80 -2.1 128,213 - Synpcc7942_0128 0.82 -1.9 128,219 - Synpcc7942_0128 0.82 -3.9 128,221 + Synpcc7942_0128 0.82 -2.9 128,267 + -0.1 128,310 + Synpcc7942_0128 0.89 -3.7 128,326 - -2.4 128,381 + -2.1 128,429 - -2.9 128,443 + +0.7 128,443 + -0.7 128,443 + -0.6 128,443 + -0.5 128,443 + -0.1 128,451 - +0.3 128,451 - -0.3 128,451 - +0.9 128,451 - +0.9 128,453 + -3.6 128,461 - -0.2 128,471 - -0.2 128,482 - +0.6 128,611 + Synpcc7942_0129 0.38 -2.1 128,653 + Synpcc7942_0129 0.48 -1.1 128,659 + Synpcc7942_0129 0.49 -1.1 128,670 + Synpcc7942_0129 0.52 -2.1 128,711 - Synpcc7942_0129 0.61 -3.1 128,722 - Synpcc7942_0129 0.64 -2.9 128,750 - Synpcc7942_0129 0.70 -2.4 128,784 - Synpcc7942_0129 0.78 -0.1 128,843 + +1.1 128,907 + Synpcc7942_0130 0.14 +0.3 128,915 - Synpcc7942_0130 0.16 -0.8 128,920 - Synpcc7942_0130 0.17 +0.6 128,941 - Synpcc7942_0130 0.20 -0.1 128,977 - Synpcc7942_0130 0.26 +0.4 129,018 - Synpcc7942_0130 0.33 -0.5 129,031 + Synpcc7942_0130 0.36 -1.4 129,033 + Synpcc7942_0130 0.36 -1.1 129,051 - Synpcc7942_0130 0.39 -1.4 129,102 + Synpcc7942_0130 0.48 -1.6 129,122 - Synpcc7942_0130 0.51 -2.4 129,210 - Synpcc7942_0130 0.66 -1.4 129,224 + Synpcc7942_0130 0.68 +1.0 129,229 + Synpcc7942_0130 0.69 -1.7 129,231 - Synpcc7942_0130 0.70 -0.8 129,243 + Synpcc7942_0130 0.72 +1.2 129,251 - Synpcc7942_0130 0.73 +1.6 129,252 + Synpcc7942_0130 0.73 -1.3 129,323 - Synpcc7942_0130 0.85 -0.1 129,330 - Synpcc7942_0130 0.86 +0.2 129,332 + Synpcc7942_0130 0.87 +1.3 129,369 - +0.2 129,404 + -0.4 129,424 - -0.1 129,488 - -0.7 129,859 - +1.5 129,869 - -0.8
Or see this region's nucleotide sequence