Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ndbA and Synpcc7942_0102 are separated by 80 nucleotides Synpcc7942_0102 and Synpcc7942_0103 are separated by 30 nucleotides Synpcc7942_0103 and Synpcc7942_0104 overlap by 14 nucleotides
Synpcc7942_0101: ndbA - type 2 NADH dehydrogenase, at 101,259 to 102,593
ndbA
Synpcc7942_0102: Synpcc7942_0102 - hypothetical protein, at 102,674 to 103,237
_0102
Synpcc7942_0103: Synpcc7942_0103 - Ankyrin, at 103,268 to 103,645
_0103
Synpcc7942_0104: Synpcc7942_0104 - hypothetical protein, at 103,632 to 104,408
_0104
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.615 kb on - strand at 102.635 kb on + strand at 102.635 kb on + strand at 102.680 kb on - strand at 102.809 kb on + strand, within Synpcc7942_0102 at 102.875 kb on + strand, within Synpcc7942_0102 at 102.877 kb on + strand, within Synpcc7942_0102 at 102.943 kb on - strand, within Synpcc7942_0102 at 102.948 kb on - strand, within Synpcc7942_0102 at 102.986 kb on - strand, within Synpcc7942_0102 at 103.248 kb on - strand at 103.293 kb on + strand at 103.301 kb on - strand at 103.307 kb on + strand, within Synpcc7942_0103 at 103.438 kb on - strand, within Synpcc7942_0103 at 103.508 kb on + strand, within Synpcc7942_0103 at 103.620 kb on - strand at 103.700 kb on - strand at 103.757 kb on - strand, within Synpcc7942_0104 at 103.757 kb on - strand, within Synpcc7942_0104 at 103.907 kb on - strand, within Synpcc7942_0104 at 103.947 kb on + strand, within Synpcc7942_0104 at 103.957 kb on + strand, within Synpcc7942_0104 at 103.957 kb on + strand, within Synpcc7942_0104 at 103.957 kb on + strand, within Synpcc7942_0104 at 103.989 kb on - strand, within Synpcc7942_0104 at 103.992 kb on + strand, within Synpcc7942_0104 at 104.047 kb on + strand, within Synpcc7942_0104 at 104.117 kb on + strand, within Synpcc7942_0104 at 104.137 kb on + strand, within Synpcc7942_0104 at 104.148 kb on - strand, within Synpcc7942_0104 at 104.188 kb on + strand, within Synpcc7942_0104 at 104.188 kb on + strand, within Synpcc7942_0104 at 104.196 kb on - strand, within Synpcc7942_0104 at 104.196 kb on - strand, within Synpcc7942_0104
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 102,615 - -1.7 102,635 + -0.1 102,635 + +0.4 102,680 - +0.1 102,809 + Synpcc7942_0102 0.24 -0.7 102,875 + Synpcc7942_0102 0.36 -0.2 102,877 + Synpcc7942_0102 0.36 +0.5 102,943 - Synpcc7942_0102 0.48 -0.7 102,948 - Synpcc7942_0102 0.49 +1.3 102,986 - Synpcc7942_0102 0.55 +2.1 103,248 - -0.1 103,293 + -0.7 103,301 - +0.9 103,307 + Synpcc7942_0103 0.10 +0.3 103,438 - Synpcc7942_0103 0.45 +1.5 103,508 + Synpcc7942_0103 0.63 +0.9 103,620 - +0.6 103,700 - +1.9 103,757 - Synpcc7942_0104 0.16 -0.1 103,757 - Synpcc7942_0104 0.16 +1.3 103,907 - Synpcc7942_0104 0.35 +2.5 103,947 + Synpcc7942_0104 0.41 -0.4 103,957 + Synpcc7942_0104 0.42 -0.2 103,957 + Synpcc7942_0104 0.42 +0.1 103,957 + Synpcc7942_0104 0.42 +0.9 103,989 - Synpcc7942_0104 0.46 -0.4 103,992 + Synpcc7942_0104 0.46 -1.5 104,047 + Synpcc7942_0104 0.53 +1.1 104,117 + Synpcc7942_0104 0.62 +0.5 104,137 + Synpcc7942_0104 0.65 +1.5 104,148 - Synpcc7942_0104 0.66 +0.9 104,188 + Synpcc7942_0104 0.72 +2.5 104,188 + Synpcc7942_0104 0.72 -0.7 104,196 - Synpcc7942_0104 0.73 -2.6 104,196 - Synpcc7942_0104 0.73 -0.3
Or see this region's nucleotide sequence