Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0092

Experiment: D-Cycloserine 0.015625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_0090 and ycf21 overlap by 4 nucleotidesycf21 and Synpcc7942_0092 are separated by 256 nucleotidesSynpcc7942_0092 and tmk are separated by 98 nucleotidestmk and dnaX overlap by 1 nucleotides Synpcc7942_0090: Synpcc7942_0090 - transcriptional regulator, GntR family, at 88,735 to 89,718 _0090 Synpcc7942_0091: ycf21 - conserved hypothetical protein YCF21, at 89,715 to 90,326 ycf21 Synpcc7942_0092: Synpcc7942_0092 - hypothetical protein, at 90,583 to 90,930 _0092 Synpcc7942_0093: tmk - Thymidylate kinase, at 91,029 to 91,676 tmk Synpcc7942_0094: dnaX - DNA polymerase III subunit delta', at 91,676 to 92,611 dnaX Position (kb) 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 89.739 kb on - strandat 89.749 kb on - strandat 90.365 kb on - strandat 90.433 kb on + strandat 90.436 kb on - strandat 90.464 kb on + strandat 90.464 kb on + strandat 90.469 kb on + strandat 90.469 kb on + strandat 90.472 kb on - strandat 90.472 kb on - strandat 90.472 kb on - strandat 90.472 kb on - strandat 90.472 kb on - strandat 90.477 kb on - strandat 90.485 kb on + strandat 90.503 kb on + strandat 90.503 kb on + strandat 90.503 kb on + strandat 90.511 kb on - strandat 90.511 kb on - strandat 90.511 kb on - strandat 90.539 kb on - strandat 90.547 kb on - strandat 90.552 kb on + strandat 90.552 kb on + strandat 90.552 kb on + strandat 90.552 kb on + strandat 90.552 kb on + strandat 90.552 kb on + strandat 90.552 kb on + strandat 90.552 kb on + strandat 90.560 kb on - strandat 90.560 kb on - strandat 90.560 kb on - strandat 90.560 kb on - strandat 90.560 kb on - strandat 90.575 kb on - strandat 90.580 kb on + strandat 90.583 kb on - strandat 90.588 kb on - strandat 90.588 kb on - strandat 90.588 kb on - strandat 90.666 kb on + strand, within Synpcc7942_0092at 90.674 kb on - strand, within Synpcc7942_0092at 90.674 kb on - strand, within Synpcc7942_0092at 90.676 kb on + strand, within Synpcc7942_0092at 90.807 kb on + strand, within Synpcc7942_0092at 90.807 kb on + strand, within Synpcc7942_0092at 90.817 kb on - strand, within Synpcc7942_0092at 90.844 kb on - strand, within Synpcc7942_0092at 90.852 kb on + strand, within Synpcc7942_0092at 90.860 kb on - strand, within Synpcc7942_0092at 90.865 kb on + strand, within Synpcc7942_0092at 90.865 kb on + strand, within Synpcc7942_0092at 90.870 kb on + strand, within Synpcc7942_0092at 90.870 kb on + strand, within Synpcc7942_0092at 90.875 kb on + strand, within Synpcc7942_0092at 90.878 kb on - strand, within Synpcc7942_0092at 90.878 kb on - strand, within Synpcc7942_0092at 90.883 kb on - strand, within Synpcc7942_0092at 90.889 kb on - strand, within Synpcc7942_0092at 90.958 kb on + strandat 91.007 kb on - strandat 91.022 kb on - strandat 91.027 kb on + strandat 91.029 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
remove
89,739 - -2.4
89,749 - +0.5
90,365 - +0.7
90,433 + -0.4
90,436 - -0.6
90,464 + +0.7
90,464 + +0.0
90,469 + +0.7
90,469 + +0.3
90,472 - +0.0
90,472 - +0.7
90,472 - +0.1
90,472 - -1.7
90,472 - -0.1
90,477 - +0.5
90,485 + +0.9
90,503 + +1.2
90,503 + +1.9
90,503 + -2.7
90,511 - +0.9
90,511 - +0.4
90,511 - +0.3
90,539 - -0.8
90,547 - +1.0
90,552 + +0.7
90,552 + -1.7
90,552 + +0.4
90,552 + +1.0
90,552 + -0.1
90,552 + +0.1
90,552 + +1.2
90,552 + +0.4
90,560 - +0.7
90,560 - +0.8
90,560 - -0.6
90,560 - -2.1
90,560 - -2.4
90,575 - -1.7
90,580 + -1.4
90,583 - +0.7
90,588 - -1.7
90,588 - -1.3
90,588 - -2.1
90,666 + Synpcc7942_0092 0.24 -2.1
90,674 - Synpcc7942_0092 0.26 -3.3
90,674 - Synpcc7942_0092 0.26 -1.5
90,676 + Synpcc7942_0092 0.27 -2.4
90,807 + Synpcc7942_0092 0.64 -0.8
90,807 + Synpcc7942_0092 0.64 -1.6
90,817 - Synpcc7942_0092 0.67 -3.0
90,844 - Synpcc7942_0092 0.75 -3.0
90,852 + Synpcc7942_0092 0.77 -0.8
90,860 - Synpcc7942_0092 0.80 -2.1
90,865 + Synpcc7942_0092 0.81 -1.8
90,865 + Synpcc7942_0092 0.81 -2.0
90,870 + Synpcc7942_0092 0.82 -0.1
90,870 + Synpcc7942_0092 0.82 -1.1
90,875 + Synpcc7942_0092 0.84 -2.7
90,878 - Synpcc7942_0092 0.85 +0.3
90,878 - Synpcc7942_0092 0.85 +1.5
90,883 - Synpcc7942_0092 0.86 -0.1
90,889 - Synpcc7942_0092 0.88 -1.3
90,958 + +1.2
91,007 - +0.4
91,022 - +0.1
91,027 + -1.7
91,029 - -0.3

Or see this region's nucleotide sequence