Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0083

Experiment: D-Cycloserine 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdlB and Synpcc7942_0083 are separated by 9 nucleotidesSynpcc7942_0083 and Synpcc7942_0084 overlap by 4 nucleotidesSynpcc7942_0084 and Synpcc7942_0085 are separated by 260 nucleotides Synpcc7942_0082: mdlB - ATPase, at 79,265 to 81,013 mdlB Synpcc7942_0083: Synpcc7942_0083 - hypothetical protein, at 81,023 to 81,220 _0083 Synpcc7942_0084: Synpcc7942_0084 - hypothetical protein, at 81,217 to 81,918 _0084 Synpcc7942_0085: Synpcc7942_0085 - HAD-superfamily hydrolase subfamily IA, variant 3, at 82,179 to 82,865 _0085 Position (kb) 81 82Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 81.012 kb on + strandat 81.015 kb on - strandat 81.017 kb on + strandat 81.188 kb on + strand, within Synpcc7942_0083at 81.194 kb on + strand, within Synpcc7942_0083at 81.195 kb on + strand, within Synpcc7942_0083at 81.196 kb on + strand, within Synpcc7942_0083at 81.228 kb on + strandat 81.267 kb on + strandat 81.276 kb on - strandat 81.284 kb on + strandat 81.284 kb on + strandat 81.284 kb on + strandat 81.287 kb on - strandat 81.289 kb on + strand, within Synpcc7942_0084at 81.289 kb on + strand, within Synpcc7942_0084at 81.326 kb on + strand, within Synpcc7942_0084at 81.334 kb on - strand, within Synpcc7942_0084at 81.358 kb on - strand, within Synpcc7942_0084at 81.368 kb on + strand, within Synpcc7942_0084at 81.459 kb on + strand, within Synpcc7942_0084at 81.459 kb on + strand, within Synpcc7942_0084at 81.461 kb on + strand, within Synpcc7942_0084at 81.467 kb on - strand, within Synpcc7942_0084at 81.475 kb on + strand, within Synpcc7942_0084at 81.483 kb on - strand, within Synpcc7942_0084at 81.483 kb on - strand, within Synpcc7942_0084at 81.488 kb on - strand, within Synpcc7942_0084at 81.488 kb on - strand, within Synpcc7942_0084at 81.488 kb on - strand, within Synpcc7942_0084at 81.495 kb on + strand, within Synpcc7942_0084at 81.495 kb on + strand, within Synpcc7942_0084at 81.496 kb on + strand, within Synpcc7942_0084at 81.503 kb on + strand, within Synpcc7942_0084at 81.503 kb on - strand, within Synpcc7942_0084at 81.504 kb on - strand, within Synpcc7942_0084at 81.504 kb on - strand, within Synpcc7942_0084at 81.535 kb on - strand, within Synpcc7942_0084at 81.550 kb on + strand, within Synpcc7942_0084at 81.558 kb on + strand, within Synpcc7942_0084at 81.558 kb on - strand, within Synpcc7942_0084at 81.566 kb on - strand, within Synpcc7942_0084at 81.566 kb on - strand, within Synpcc7942_0084at 81.584 kb on + strand, within Synpcc7942_0084at 81.595 kb on + strand, within Synpcc7942_0084at 81.619 kb on + strand, within Synpcc7942_0084at 81.622 kb on - strand, within Synpcc7942_0084at 81.624 kb on + strand, within Synpcc7942_0084at 81.634 kb on + strand, within Synpcc7942_0084at 81.644 kb on - strand, within Synpcc7942_0084at 81.650 kb on - strand, within Synpcc7942_0084at 81.691 kb on + strand, within Synpcc7942_0084at 81.694 kb on - strand, within Synpcc7942_0084at 81.754 kb on + strand, within Synpcc7942_0084at 81.772 kb on + strand, within Synpcc7942_0084at 81.772 kb on - strand, within Synpcc7942_0084at 81.789 kb on + strandat 81.797 kb on - strand, within Synpcc7942_0084at 81.808 kb on - strand, within Synpcc7942_0084at 81.808 kb on - strand, within Synpcc7942_0084at 81.854 kb on + strandat 81.854 kb on + strandat 81.854 kb on + strandat 81.854 kb on + strandat 81.857 kb on - strandat 81.862 kb on - strandat 81.864 kb on - strandat 81.918 kb on + strandat 81.925 kb on + strandat 81.925 kb on + strandat 81.925 kb on + strandat 81.925 kb on + strandat 81.925 kb on + strandat 81.925 kb on + strandat 81.925 kb on + strandat 81.933 kb on - strandat 81.933 kb on - strandat 81.945 kb on + strandat 81.984 kb on + strandat 81.984 kb on + strandat 81.996 kb on + strandat 81.998 kb on + strandat 82.004 kb on - strandat 82.004 kb on - strandat 82.004 kb on - strandat 82.004 kb on - strandat 82.004 kb on - strandat 82.004 kb on - strandat 82.017 kb on + strandat 82.029 kb on + strandat 82.040 kb on + strandat 82.086 kb on + strandat 82.123 kb on + strandat 82.123 kb on + strandat 82.147 kb on + strandat 82.147 kb on + strandat 82.147 kb on + strandat 82.147 kb on + strandat 82.148 kb on + strandat 82.148 kb on + strandat 82.148 kb on + strandat 82.155 kb on - strandat 82.161 kb on - strandat 82.170 kb on + strandat 82.170 kb on + strandat 82.178 kb on - strandat 82.183 kb on + strandat 82.183 kb on + strandat 82.183 kb on + strandat 82.185 kb on - strandat 82.191 kb on - strandat 82.195 kb on + strandat 82.195 kb on + strandat 82.203 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
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81,012 + +0.4
81,015 - -0.4
81,017 + +0.9
81,188 + Synpcc7942_0083 0.83 -0.1
81,194 + Synpcc7942_0083 0.86 +1.3
81,195 + Synpcc7942_0083 0.87 +0.5
81,196 + Synpcc7942_0083 0.87 +0.5
81,228 + -0.1
81,267 + +0.7
81,276 - -0.9
81,284 + +0.9
81,284 + -1.3
81,284 + +1.3
81,287 - +0.5
81,289 + Synpcc7942_0084 0.10 -0.9
81,289 + Synpcc7942_0084 0.10 -1.7
81,326 + Synpcc7942_0084 0.16 -0.6
81,334 - Synpcc7942_0084 0.17 -2.4
81,358 - Synpcc7942_0084 0.20 +0.2
81,368 + Synpcc7942_0084 0.22 +0.0
81,459 + Synpcc7942_0084 0.34 -0.1
81,459 + Synpcc7942_0084 0.34 -0.4
81,461 + Synpcc7942_0084 0.35 -0.1
81,467 - Synpcc7942_0084 0.36 -0.3
81,475 + Synpcc7942_0084 0.37 -0.7
81,483 - Synpcc7942_0084 0.38 +0.6
81,483 - Synpcc7942_0084 0.38 -1.1
81,488 - Synpcc7942_0084 0.39 -0.7
81,488 - Synpcc7942_0084 0.39 +0.5
81,488 - Synpcc7942_0084 0.39 -1.1
81,495 + Synpcc7942_0084 0.40 +0.6
81,495 + Synpcc7942_0084 0.40 +0.9
81,496 + Synpcc7942_0084 0.40 -0.1
81,503 + Synpcc7942_0084 0.41 +0.6
81,503 - Synpcc7942_0084 0.41 -0.8
81,504 - Synpcc7942_0084 0.41 -0.4
81,504 - Synpcc7942_0084 0.41 +2.2
81,535 - Synpcc7942_0084 0.45 -0.3
81,550 + Synpcc7942_0084 0.47 -0.1
81,558 + Synpcc7942_0084 0.49 -1.0
81,558 - Synpcc7942_0084 0.49 +0.4
81,566 - Synpcc7942_0084 0.50 +0.4
81,566 - Synpcc7942_0084 0.50 +1.9
81,584 + Synpcc7942_0084 0.52 -0.7
81,595 + Synpcc7942_0084 0.54 +0.5
81,619 + Synpcc7942_0084 0.57 +0.6
81,622 - Synpcc7942_0084 0.58 -0.5
81,624 + Synpcc7942_0084 0.58 +0.9
81,634 + Synpcc7942_0084 0.59 -0.4
81,644 - Synpcc7942_0084 0.61 +0.3
81,650 - Synpcc7942_0084 0.62 +1.4
81,691 + Synpcc7942_0084 0.68 +0.6
81,694 - Synpcc7942_0084 0.68 +1.5
81,754 + Synpcc7942_0084 0.76 -0.2
81,772 + Synpcc7942_0084 0.79 -0.7
81,772 - Synpcc7942_0084 0.79 +0.2
81,789 + -0.1
81,797 - Synpcc7942_0084 0.83 -1.4
81,808 - Synpcc7942_0084 0.84 -0.9
81,808 - Synpcc7942_0084 0.84 +0.7
81,854 + -0.3
81,854 + +0.2
81,854 + -1.5
81,854 + -0.1
81,857 - +0.5
81,862 - +3.1
81,864 - -0.8
81,918 + -0.1
81,925 + -0.1
81,925 + +1.1
81,925 + -2.1
81,925 + -0.6
81,925 + +0.6
81,925 + +0.0
81,925 + -1.7
81,933 - +0.4
81,933 - -1.7
81,945 + -0.8
81,984 + +0.5
81,984 + -0.1
81,996 + +0.3
81,998 + -0.7
82,004 - +0.2
82,004 - -1.7
82,004 - -0.3
82,004 - -0.5
82,004 - +0.3
82,004 - +0.3
82,017 + +0.3
82,029 + -0.7
82,040 + -0.3
82,086 + +1.9
82,123 + -3.4
82,123 + -0.7
82,147 + +0.4
82,147 + +1.8
82,147 + -0.1
82,147 + -0.1
82,148 + +0.3
82,148 + +0.9
82,148 + -0.1
82,155 - -0.1
82,161 - -1.1
82,170 + -0.9
82,170 + -0.3
82,178 - -0.7
82,183 + +0.0
82,183 + -0.7
82,183 + +0.0
82,185 - +0.7
82,191 - -0.5
82,195 + -0.5
82,195 + -0.5
82,203 - +1.1

Or see this region's nucleotide sequence