Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lytB and Synpcc7942_0074 are separated by 109 nucleotides Synpcc7942_0074 and pepP are separated by 115 nucleotides pepP and Synpcc7942_0076 are separated by 2 nucleotides Synpcc7942_0076 and Synpcc7942_0077 are separated by 75 nucleotides
Synpcc7942_0073: lytB - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 72,000 to 73,196
lytB
Synpcc7942_0074: Synpcc7942_0074 - hypothetical protein, at 73,306 to 73,659
_0074
Synpcc7942_0075: pepP - aminopeptidase P. Metallo peptidase. MEROPS family M24B, at 73,775 to 75,088
pepP
Synpcc7942_0076: Synpcc7942_0076 - extracellular solute-binding protein, family 3, at 75,091 to 75,852
_0076
Synpcc7942_0077: Synpcc7942_0077 - transcriptional regulator, XRE family, at 75,928 to 76,617
_0077
Position (kb) 73
74
75
76 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 73.252 kb on + strand at 73.260 kb on - strand at 73.330 kb on + strand at 73.336 kb on + strand at 73.344 kb on - strand, within Synpcc7942_0074 at 73.345 kb on - strand, within Synpcc7942_0074 at 73.379 kb on - strand at 73.389 kb on - strand, within Synpcc7942_0074 at 73.389 kb on - strand, within Synpcc7942_0074 at 73.408 kb on + strand, within Synpcc7942_0074 at 73.419 kb on + strand, within Synpcc7942_0074 at 73.422 kb on - strand, within Synpcc7942_0074 at 73.426 kb on + strand, within Synpcc7942_0074 at 73.433 kb on + strand, within Synpcc7942_0074 at 73.433 kb on + strand, within Synpcc7942_0074 at 73.441 kb on - strand, within Synpcc7942_0074 at 73.441 kb on - strand, within Synpcc7942_0074 at 73.474 kb on - strand, within Synpcc7942_0074 at 73.484 kb on + strand, within Synpcc7942_0074 at 73.489 kb on + strand, within Synpcc7942_0074 at 73.496 kb on - strand, within Synpcc7942_0074 at 73.497 kb on - strand, within Synpcc7942_0074 at 73.503 kb on + strand at 73.525 kb on - strand, within Synpcc7942_0074 at 73.525 kb on - strand, within Synpcc7942_0074 at 73.526 kb on + strand, within Synpcc7942_0074 at 73.543 kb on + strand, within Synpcc7942_0074 at 73.543 kb on + strand, within Synpcc7942_0074 at 73.544 kb on - strand, within Synpcc7942_0074 at 73.545 kb on + strand, within Synpcc7942_0074 at 73.551 kb on - strand at 73.553 kb on - strand, within Synpcc7942_0074 at 73.568 kb on - strand, within Synpcc7942_0074 at 73.580 kb on + strand, within Synpcc7942_0074 at 73.592 kb on + strand, within Synpcc7942_0074 at 73.597 kb on + strand, within Synpcc7942_0074 at 73.600 kb on - strand, within Synpcc7942_0074 at 73.600 kb on - strand, within Synpcc7942_0074 at 73.605 kb on - strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.619 kb on + strand, within Synpcc7942_0074 at 73.622 kb on - strand, within Synpcc7942_0074 at 73.627 kb on - strand at 73.627 kb on - strand at 73.649 kb on + strand at 73.657 kb on - strand at 73.678 kb on + strand at 73.737 kb on - strand at 73.767 kb on + strand at 73.772 kb on + strand at 73.775 kb on - strand at 73.778 kb on + strand at 73.780 kb on - strand at 73.883 kb on + strand at 73.901 kb on - strand at 74.055 kb on - strand, within pepP at 74.196 kb on + strand, within pepP at 74.240 kb on - strand, within pepP at 74.284 kb on - strand, within pepP at 74.345 kb on + strand, within pepP at 74.516 kb on - strand, within pepP at 74.637 kb on + strand, within pepP at 74.724 kb on + strand, within pepP at 74.755 kb on + strand, within pepP at 74.756 kb on + strand, within pepP at 74.833 kb on + strand, within pepP at 74.859 kb on + strand, within pepP at 74.924 kb on + strand, within pepP at 74.926 kb on + strand, within pepP at 74.934 kb on - strand, within pepP at 74.958 kb on - strand at 75.082 kb on - strand at 75.131 kb on + strand at 75.131 kb on + strand at 75.141 kb on + strand at 75.149 kb on - strand at 75.236 kb on + strand, within Synpcc7942_0076 at 75.236 kb on + strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.244 kb on - strand, within Synpcc7942_0076 at 75.320 kb on + strand, within Synpcc7942_0076 at 75.328 kb on - strand, within Synpcc7942_0076 at 75.357 kb on + strand, within Synpcc7942_0076 at 75.357 kb on + strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.397 kb on - strand, within Synpcc7942_0076 at 75.436 kb on + strand, within Synpcc7942_0076 at 75.436 kb on + strand, within Synpcc7942_0076 at 75.444 kb on - strand, within Synpcc7942_0076 at 75.446 kb on + strand at 75.446 kb on + strand, within Synpcc7942_0076 at 75.454 kb on - strand, within Synpcc7942_0076 at 75.454 kb on - strand, within Synpcc7942_0076 at 75.479 kb on - strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.526 kb on + strand, within Synpcc7942_0076 at 75.534 kb on - strand at 75.534 kb on - strand, within Synpcc7942_0076 at 75.557 kb on - strand, within Synpcc7942_0076 at 75.693 kb on - strand, within Synpcc7942_0076 at 75.764 kb on - strand, within Synpcc7942_0076 at 75.791 kb on + strand at 75.799 kb on - strand at 75.799 kb on - strand at 75.996 kb on + strand at 75.999 kb on - strand, within Synpcc7942_0077 at 76.037 kb on - strand, within Synpcc7942_0077 at 76.037 kb on - strand, within Synpcc7942_0077 at 76.085 kb on + strand, within Synpcc7942_0077
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 73,252 + -0.5 73,260 - -0.8 73,330 + -1.0 73,336 + -1.1 73,344 - Synpcc7942_0074 0.11 +0.9 73,345 - Synpcc7942_0074 0.11 +2.2 73,379 - +1.5 73,389 - Synpcc7942_0074 0.23 -0.6 73,389 - Synpcc7942_0074 0.23 -0.1 73,408 + Synpcc7942_0074 0.29 +0.5 73,419 + Synpcc7942_0074 0.32 -0.5 73,422 - Synpcc7942_0074 0.33 -0.7 73,426 + Synpcc7942_0074 0.34 -2.1 73,433 + Synpcc7942_0074 0.36 +0.4 73,433 + Synpcc7942_0074 0.36 +0.9 73,441 - Synpcc7942_0074 0.38 -0.8 73,441 - Synpcc7942_0074 0.38 +0.1 73,474 - Synpcc7942_0074 0.47 -0.7 73,484 + Synpcc7942_0074 0.50 -0.7 73,489 + Synpcc7942_0074 0.52 +0.6 73,496 - Synpcc7942_0074 0.54 +0.2 73,497 - Synpcc7942_0074 0.54 +0.3 73,503 + -2.4 73,525 - Synpcc7942_0074 0.62 +0.9 73,525 - Synpcc7942_0074 0.62 -0.5 73,526 + Synpcc7942_0074 0.62 +0.1 73,543 + Synpcc7942_0074 0.67 -0.5 73,543 + Synpcc7942_0074 0.67 +2.2 73,544 - Synpcc7942_0074 0.67 +0.9 73,545 + Synpcc7942_0074 0.68 -0.4 73,551 - -1.1 73,553 - Synpcc7942_0074 0.70 -0.1 73,568 - Synpcc7942_0074 0.74 -0.1 73,580 + Synpcc7942_0074 0.77 +0.5 73,592 + Synpcc7942_0074 0.81 +0.0 73,597 + Synpcc7942_0074 0.82 +1.4 73,600 - Synpcc7942_0074 0.83 -0.1 73,600 - Synpcc7942_0074 0.83 -1.9 73,605 - Synpcc7942_0074 0.84 -0.1 73,619 + Synpcc7942_0074 0.88 -0.8 73,619 + Synpcc7942_0074 0.88 -1.7 73,619 + Synpcc7942_0074 0.88 -0.3 73,619 + Synpcc7942_0074 0.88 -0.3 73,619 + Synpcc7942_0074 0.88 +1.2 73,619 + Synpcc7942_0074 0.88 +0.7 73,622 - Synpcc7942_0074 0.89 -1.1 73,627 - -0.8 73,627 - -0.7 73,649 + -2.4 73,657 - -0.4 73,678 + +0.7 73,737 - +0.2 73,767 + +0.4 73,772 + -1.9 73,775 - +0.9 73,778 + -2.4 73,780 - +1.0 73,883 + -3.9 73,901 - -3.6 74,055 - pepP Synpcc7942_0075 0.21 -2.7 74,196 + pepP Synpcc7942_0075 0.32 -1.7 74,240 - pepP Synpcc7942_0075 0.35 -4.8 74,284 - pepP Synpcc7942_0075 0.39 +0.6 74,345 + pepP Synpcc7942_0075 0.43 -2.1 74,516 - pepP Synpcc7942_0075 0.56 -0.1 74,637 + pepP Synpcc7942_0075 0.66 -1.4 74,724 + pepP Synpcc7942_0075 0.72 -2.7 74,755 + pepP Synpcc7942_0075 0.75 -0.8 74,756 + pepP Synpcc7942_0075 0.75 -2.4 74,833 + pepP Synpcc7942_0075 0.81 -2.4 74,859 + pepP Synpcc7942_0075 0.82 -2.4 74,924 + pepP Synpcc7942_0075 0.87 -1.7 74,926 + pepP Synpcc7942_0075 0.88 -0.1 74,934 - pepP Synpcc7942_0075 0.88 -1.7 74,958 - -2.8 75,082 - +1.5 75,131 + -0.1 75,131 + -0.2 75,141 + +0.7 75,149 - -1.4 75,236 + Synpcc7942_0076 0.19 -0.9 75,236 + Synpcc7942_0076 0.19 +0.6 75,244 - Synpcc7942_0076 0.20 +0.2 75,244 - Synpcc7942_0076 0.20 +0.9 75,244 - Synpcc7942_0076 0.20 -1.3 75,320 + Synpcc7942_0076 0.30 +0.3 75,328 - Synpcc7942_0076 0.31 +1.2 75,357 + Synpcc7942_0076 0.35 -0.7 75,357 + Synpcc7942_0076 0.35 -2.1 75,397 - Synpcc7942_0076 0.40 +0.2 75,397 - Synpcc7942_0076 0.40 +0.1 75,397 - Synpcc7942_0076 0.40 -1.7 75,436 + Synpcc7942_0076 0.45 +0.3 75,436 + Synpcc7942_0076 0.45 -0.8 75,444 - Synpcc7942_0076 0.46 +0.7 75,446 + +1.9 75,446 + Synpcc7942_0076 0.47 -1.1 75,454 - Synpcc7942_0076 0.48 -1.3 75,454 - Synpcc7942_0076 0.48 -1.5 75,479 - Synpcc7942_0076 0.51 +0.0 75,526 + Synpcc7942_0076 0.57 -0.7 75,526 + Synpcc7942_0076 0.57 -1.1 75,526 + Synpcc7942_0076 0.57 +2.5 75,534 - -0.1 75,534 - Synpcc7942_0076 0.58 -0.1 75,557 - Synpcc7942_0076 0.61 +3.4 75,693 - Synpcc7942_0076 0.79 +1.7 75,764 - Synpcc7942_0076 0.88 -0.7 75,791 + +0.1 75,799 - +1.6 75,799 - +2.0 75,996 + +1.2 75,999 - Synpcc7942_0077 0.10 -1.1 76,037 - Synpcc7942_0077 0.16 +0.2 76,037 - Synpcc7942_0077 0.16 -1.4 76,085 + Synpcc7942_0077 0.23 +0.2
Or see this region's nucleotide sequence