Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0057

Experiment: D-Cycloserine 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrfbE and Synpcc7942_0057 are separated by 3 nucleotidesSynpcc7942_0057 and rfbC overlap by 4 nucleotidesrfbC and Synpcc7942_0059 are separated by 20 nucleotidesSynpcc7942_0059 and Synpcc7942_0060 overlap by 22 nucleotides Synpcc7942_0056: rfbE - perosamine synthetase, at 57,941 to 59,068 rfbE Synpcc7942_0057: Synpcc7942_0057 - putative C-3 methyl transferase, at 59,072 to 60,304 _0057 Synpcc7942_0058: rfbC - dTDP-4-dehydrorhamnose 3,5-epimerase, at 60,301 to 60,846 rfbC Synpcc7942_0059: Synpcc7942_0059 - hypothetical protein, at 60,867 to 61,112 _0059 Synpcc7942_0060: Synpcc7942_0060 - hypothetical protein, at 61,091 to 61,369 _0060 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2 3at 58.221 kb on - strand, within rfbEat 58.258 kb on + strandat 58.276 kb on - strand, within rfbEat 58.484 kb on + strand, within rfbEat 58.545 kb on + strand, within rfbEat 58.568 kb on + strand, within rfbEat 58.706 kb on + strand, within rfbEat 58.717 kb on + strand, within rfbEat 58.828 kb on + strand, within rfbEat 58.864 kb on - strand, within rfbEat 58.884 kb on - strand, within rfbEat 59.064 kb on + strandat 59.203 kb on + strand, within Synpcc7942_0057at 59.203 kb on + strand, within Synpcc7942_0057at 59.211 kb on - strand, within Synpcc7942_0057at 59.318 kb on + strand, within Synpcc7942_0057at 59.319 kb on + strand, within Synpcc7942_0057at 59.326 kb on - strand, within Synpcc7942_0057at 59.491 kb on + strand, within Synpcc7942_0057at 59.503 kb on + strand, within Synpcc7942_0057at 59.511 kb on - strand, within Synpcc7942_0057at 59.561 kb on - strand, within Synpcc7942_0057at 59.571 kb on - strand, within Synpcc7942_0057at 59.620 kb on + strand, within Synpcc7942_0057at 59.622 kb on - strand, within Synpcc7942_0057at 59.628 kb on - strand, within Synpcc7942_0057at 59.646 kb on - strand, within Synpcc7942_0057at 59.660 kb on - strand, within Synpcc7942_0057at 59.677 kb on + strand, within Synpcc7942_0057at 59.677 kb on + strand, within Synpcc7942_0057at 59.718 kb on + strand, within Synpcc7942_0057at 59.719 kb on - strand, within Synpcc7942_0057at 59.752 kb on + strand, within Synpcc7942_0057at 59.779 kb on - strand, within Synpcc7942_0057at 59.843 kb on + strand, within Synpcc7942_0057at 59.846 kb on - strand, within Synpcc7942_0057at 59.908 kb on - strand, within Synpcc7942_0057at 59.920 kb on + strand, within Synpcc7942_0057at 59.928 kb on - strand, within Synpcc7942_0057at 59.950 kb on + strand, within Synpcc7942_0057at 59.956 kb on - strand, within Synpcc7942_0057at 59.958 kb on - strand, within Synpcc7942_0057at 59.973 kb on - strand, within Synpcc7942_0057at 60.011 kb on + strand, within Synpcc7942_0057at 60.017 kb on + strand, within Synpcc7942_0057at 60.018 kb on - strand, within Synpcc7942_0057at 60.047 kb on + strand, within Synpcc7942_0057at 60.066 kb on - strand, within Synpcc7942_0057at 60.066 kb on - strand, within Synpcc7942_0057at 60.070 kb on + strand, within Synpcc7942_0057at 60.071 kb on - strand, within Synpcc7942_0057at 60.076 kb on - strand, within Synpcc7942_0057at 60.102 kb on + strand, within Synpcc7942_0057at 60.102 kb on + strand, within Synpcc7942_0057at 60.105 kb on + strand, within Synpcc7942_0057at 60.110 kb on - strand, within Synpcc7942_0057at 60.140 kb on + strand, within Synpcc7942_0057at 60.140 kb on + strand, within Synpcc7942_0057at 60.147 kb on + strand, within Synpcc7942_0057at 60.147 kb on + strand, within Synpcc7942_0057at 60.172 kb on - strand, within Synpcc7942_0057at 60.173 kb on - strand, within Synpcc7942_0057at 60.174 kb on - strand, within Synpcc7942_0057at 60.180 kb on + strand, within Synpcc7942_0057at 60.193 kb on - strandat 60.198 kb on - strandat 60.238 kb on - strandat 60.274 kb on + strandat 60.328 kb on - strandat 60.345 kb on + strandat 60.345 kb on + strandat 60.345 kb on + strandat 60.345 kb on + strandat 60.348 kb on - strandat 60.353 kb on - strandat 60.378 kb on + strand, within rfbCat 60.386 kb on - strand, within rfbCat 60.396 kb on - strand, within rfbCat 60.436 kb on - strand, within rfbCat 60.468 kb on + strand, within rfbCat 60.476 kb on - strand, within rfbCat 60.496 kb on + strand, within rfbCat 60.506 kb on + strand, within rfbCat 60.512 kb on - strand, within rfbCat 60.514 kb on - strand, within rfbCat 60.514 kb on - strand, within rfbCat 60.514 kb on - strand, within rfbCat 60.516 kb on + strand, within rfbCat 60.555 kb on - strand, within rfbCat 60.573 kb on + strand, within rfbCat 60.587 kb on + strand, within rfbCat 60.587 kb on + strand, within rfbCat 60.589 kb on - strand, within rfbCat 60.595 kb on - strand, within rfbCat 60.595 kb on - strand, within rfbCat 60.621 kb on + strand, within rfbCat 60.629 kb on - strand, within rfbCat 60.666 kb on + strand, within rfbCat 60.682 kb on - strand, within rfbCat 60.688 kb on - strand, within rfbCat 60.696 kb on - strand, within rfbCat 60.704 kb on + strand, within rfbCat 60.712 kb on - strand, within rfbCat 60.716 kb on + strand, within rfbCat 60.724 kb on - strand, within rfbCat 60.724 kb on - strand, within rfbCat 60.724 kb on - strand, within rfbCat 60.813 kb on - strandat 60.818 kb on - strandat 60.835 kb on - strandat 60.953 kb on + strand, within Synpcc7942_0059at 60.961 kb on - strand, within Synpcc7942_0059at 60.975 kb on - strand, within Synpcc7942_0059at 60.996 kb on - strand, within Synpcc7942_0059at 61.050 kb on - strand, within Synpcc7942_0059at 61.058 kb on - strand, within Synpcc7942_0059at 61.083 kb on - strand, within Synpcc7942_0059at 61.119 kb on + strand, within Synpcc7942_0060at 61.208 kb on - strand, within Synpcc7942_0060at 61.225 kb on + strand, within Synpcc7942_0060at 61.270 kb on - strand, within Synpcc7942_0060at 61.282 kb on + strand, within Synpcc7942_0060at 61.290 kb on - strand, within Synpcc7942_0060at 61.295 kb on - strand, within Synpcc7942_0060

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
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58,221 - rfbE Synpcc7942_0056 0.25 +0.6
58,258 + +1.9
58,276 - rfbE Synpcc7942_0056 0.30 -0.5
58,484 + rfbE Synpcc7942_0056 0.48 -2.2
58,545 + rfbE Synpcc7942_0056 0.54 +0.5
58,568 + rfbE Synpcc7942_0056 0.56 +0.9
58,706 + rfbE Synpcc7942_0056 0.68 +0.7
58,717 + rfbE Synpcc7942_0056 0.69 -0.5
58,828 + rfbE Synpcc7942_0056 0.79 -1.7
58,864 - rfbE Synpcc7942_0056 0.82 +0.5
58,884 - rfbE Synpcc7942_0056 0.84 -0.9
59,064 + +0.7
59,203 + Synpcc7942_0057 0.11 +2.1
59,203 + Synpcc7942_0057 0.11 +1.5
59,211 - Synpcc7942_0057 0.11 +1.3
59,318 + Synpcc7942_0057 0.20 +2.2
59,319 + Synpcc7942_0057 0.20 +0.6
59,326 - Synpcc7942_0057 0.21 +1.5
59,491 + Synpcc7942_0057 0.34 +2.0
59,503 + Synpcc7942_0057 0.35 +1.0
59,511 - Synpcc7942_0057 0.36 -0.1
59,561 - Synpcc7942_0057 0.40 +1.4
59,571 - Synpcc7942_0057 0.40 +0.9
59,620 + Synpcc7942_0057 0.44 -0.1
59,622 - Synpcc7942_0057 0.45 -0.1
59,628 - Synpcc7942_0057 0.45 -0.1
59,646 - Synpcc7942_0057 0.47 +0.5
59,660 - Synpcc7942_0057 0.48 +1.5
59,677 + Synpcc7942_0057 0.49 +2.7
59,677 + Synpcc7942_0057 0.49 -1.4
59,718 + Synpcc7942_0057 0.52 -0.3
59,719 - Synpcc7942_0057 0.52 -0.0
59,752 + Synpcc7942_0057 0.55 +0.8
59,779 - Synpcc7942_0057 0.57 +0.2
59,843 + Synpcc7942_0057 0.63 +0.5
59,846 - Synpcc7942_0057 0.63 +0.6
59,908 - Synpcc7942_0057 0.68 +0.1
59,920 + Synpcc7942_0057 0.69 +1.8
59,928 - Synpcc7942_0057 0.69 -0.5
59,950 + Synpcc7942_0057 0.71 +1.3
59,956 - Synpcc7942_0057 0.72 -2.1
59,958 - Synpcc7942_0057 0.72 +0.7
59,973 - Synpcc7942_0057 0.73 -0.6
60,011 + Synpcc7942_0057 0.76 +1.9
60,017 + Synpcc7942_0057 0.77 +0.7
60,018 - Synpcc7942_0057 0.77 -1.2
60,047 + Synpcc7942_0057 0.79 +0.2
60,066 - Synpcc7942_0057 0.81 +0.7
60,066 - Synpcc7942_0057 0.81 -2.1
60,070 + Synpcc7942_0057 0.81 -0.1
60,071 - Synpcc7942_0057 0.81 +0.5
60,076 - Synpcc7942_0057 0.81 +2.2
60,102 + Synpcc7942_0057 0.84 -0.7
60,102 + Synpcc7942_0057 0.84 +1.1
60,105 + Synpcc7942_0057 0.84 -0.1
60,110 - Synpcc7942_0057 0.84 +0.2
60,140 + Synpcc7942_0057 0.87 +2.3
60,140 + Synpcc7942_0057 0.87 +0.0
60,147 + Synpcc7942_0057 0.87 +0.5
60,147 + Synpcc7942_0057 0.87 +1.2
60,172 - Synpcc7942_0057 0.89 -0.5
60,173 - Synpcc7942_0057 0.89 -0.8
60,174 - Synpcc7942_0057 0.89 -0.1
60,180 + Synpcc7942_0057 0.90 -0.2
60,193 - -1.6
60,198 - +1.1
60,238 - +0.5
60,274 + +0.6
60,328 - -0.7
60,345 + -0.5
60,345 + -0.4
60,345 + -2.7
60,345 + -0.1
60,348 - +0.7
60,353 - -2.7
60,378 + rfbC Synpcc7942_0058 0.14 -0.4
60,386 - rfbC Synpcc7942_0058 0.16 -0.1
60,396 - rfbC Synpcc7942_0058 0.17 -0.4
60,436 - rfbC Synpcc7942_0058 0.25 -2.1
60,468 + rfbC Synpcc7942_0058 0.31 +0.9
60,476 - rfbC Synpcc7942_0058 0.32 -0.4
60,496 + rfbC Synpcc7942_0058 0.36 -0.1
60,506 + rfbC Synpcc7942_0058 0.38 +0.7
60,512 - rfbC Synpcc7942_0058 0.39 +2.2
60,514 - rfbC Synpcc7942_0058 0.39 -0.1
60,514 - rfbC Synpcc7942_0058 0.39 +0.3
60,514 - rfbC Synpcc7942_0058 0.39 +0.8
60,516 + rfbC Synpcc7942_0058 0.39 +0.1
60,555 - rfbC Synpcc7942_0058 0.47 -0.1
60,573 + rfbC Synpcc7942_0058 0.50 +0.3
60,587 + rfbC Synpcc7942_0058 0.52 +1.5
60,587 + rfbC Synpcc7942_0058 0.52 +0.5
60,589 - rfbC Synpcc7942_0058 0.53 -0.4
60,595 - rfbC Synpcc7942_0058 0.54 -0.6
60,595 - rfbC Synpcc7942_0058 0.54 +2.9
60,621 + rfbC Synpcc7942_0058 0.59 -1.9
60,629 - rfbC Synpcc7942_0058 0.60 -0.4
60,666 + rfbC Synpcc7942_0058 0.67 -0.1
60,682 - rfbC Synpcc7942_0058 0.70 -0.3
60,688 - rfbC Synpcc7942_0058 0.71 +0.5
60,696 - rfbC Synpcc7942_0058 0.72 -0.1
60,704 + rfbC Synpcc7942_0058 0.74 -0.1
60,712 - rfbC Synpcc7942_0058 0.75 +1.5
60,716 + rfbC Synpcc7942_0058 0.76 +0.2
60,724 - rfbC Synpcc7942_0058 0.77 +0.1
60,724 - rfbC Synpcc7942_0058 0.77 +0.1
60,724 - rfbC Synpcc7942_0058 0.77 +0.8
60,813 - -0.1
60,818 - +1.9
60,835 - +0.7
60,953 + Synpcc7942_0059 0.35 +0.6
60,961 - Synpcc7942_0059 0.38 -0.1
60,975 - Synpcc7942_0059 0.44 +1.6
60,996 - Synpcc7942_0059 0.52 +1.5
61,050 - Synpcc7942_0059 0.74 -1.7
61,058 - Synpcc7942_0059 0.78 -1.3
61,083 - Synpcc7942_0059 0.88 -0.2
61,119 + Synpcc7942_0060 0.10 +0.8
61,208 - Synpcc7942_0060 0.42 +1.5
61,225 + Synpcc7942_0060 0.48 +0.9
61,270 - Synpcc7942_0060 0.64 +1.3
61,282 + Synpcc7942_0060 0.68 -1.4
61,290 - Synpcc7942_0060 0.71 +0.9
61,295 - Synpcc7942_0060 0.73 +1.4

Or see this region's nucleotide sequence