Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0050 and Synpcc7942_0051 overlap by 11 nucleotides Synpcc7942_0051 and Synpcc7942_0052 are separated by 4 nucleotides Synpcc7942_0052 and Synpcc7942_0053 are separated by 173 nucleotides
Synpcc7942_0050: Synpcc7942_0050 - hypothetical protein, at 50,070 to 52,616
_0050
Synpcc7942_0051: Synpcc7942_0051 - TPR repeat, at 52,606 to 54,507
_0051
Synpcc7942_0052: Synpcc7942_0052 - hypothetical protein, at 54,512 to 55,030
_0052
Synpcc7942_0053: Synpcc7942_0053 - hypothetical protein, at 55,204 to 56,352
_0053
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 51.770 kb on + strand, within Synpcc7942_0050 at 51.811 kb on - strand, within Synpcc7942_0050 at 51.898 kb on + strand, within Synpcc7942_0050 at 51.899 kb on + strand, within Synpcc7942_0050 at 51.899 kb on + strand, within Synpcc7942_0050 at 51.918 kb on + strand, within Synpcc7942_0050 at 52.034 kb on + strand, within Synpcc7942_0050 at 52.042 kb on - strand at 52.098 kb on - strand, within Synpcc7942_0050 at 52.110 kb on + strand, within Synpcc7942_0050 at 52.118 kb on - strand, within Synpcc7942_0050 at 52.118 kb on - strand, within Synpcc7942_0050 at 52.118 kb on - strand, within Synpcc7942_0050 at 52.131 kb on + strand, within Synpcc7942_0050 at 52.280 kb on + strand, within Synpcc7942_0050 at 52.291 kb on + strand, within Synpcc7942_0050 at 52.353 kb on + strand, within Synpcc7942_0050 at 52.354 kb on + strand, within Synpcc7942_0050 at 52.362 kb on - strand at 52.381 kb on - strand at 52.428 kb on - strand at 52.430 kb on - strand at 52.685 kb on - strand at 52.691 kb on + strand at 52.700 kb on + strand at 52.724 kb on + strand at 52.724 kb on + strand at 52.724 kb on + strand at 52.724 kb on + strand at 52.732 kb on - strand at 52.732 kb on - strand at 52.732 kb on - strand at 52.788 kb on - strand at 52.850 kb on + strand, within Synpcc7942_0051 at 52.882 kb on + strand, within Synpcc7942_0051 at 52.898 kb on + strand, within Synpcc7942_0051 at 52.904 kb on - strand, within Synpcc7942_0051 at 52.928 kb on - strand, within Synpcc7942_0051 at 52.953 kb on + strand, within Synpcc7942_0051 at 52.953 kb on - strand, within Synpcc7942_0051 at 52.967 kb on + strand, within Synpcc7942_0051 at 52.967 kb on + strand, within Synpcc7942_0051 at 52.969 kb on + strand, within Synpcc7942_0051 at 52.975 kb on - strand, within Synpcc7942_0051 at 53.082 kb on - strand, within Synpcc7942_0051 at 53.154 kb on - strand, within Synpcc7942_0051 at 53.318 kb on + strand, within Synpcc7942_0051 at 53.318 kb on + strand, within Synpcc7942_0051 at 53.318 kb on + strand, within Synpcc7942_0051 at 53.325 kb on - strand, within Synpcc7942_0051 at 53.339 kb on - strand, within Synpcc7942_0051 at 53.412 kb on + strand, within Synpcc7942_0051 at 53.420 kb on - strand, within Synpcc7942_0051 at 53.691 kb on + strand, within Synpcc7942_0051 at 53.697 kb on - strand, within Synpcc7942_0051 at 53.816 kb on + strand, within Synpcc7942_0051 at 53.824 kb on - strand, within Synpcc7942_0051 at 53.892 kb on - strand, within Synpcc7942_0051 at 53.980 kb on + strand, within Synpcc7942_0051 at 54.026 kb on + strand, within Synpcc7942_0051 at 54.149 kb on - strand, within Synpcc7942_0051 at 54.316 kb on + strand, within Synpcc7942_0051 at 54.361 kb on - strand at 54.496 kb on - strand at 54.707 kb on - strand, within Synpcc7942_0052 at 54.755 kb on - strand, within Synpcc7942_0052 at 54.768 kb on - strand, within Synpcc7942_0052 at 54.768 kb on - strand, within Synpcc7942_0052 at 55.322 kb on + strand, within Synpcc7942_0053
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 51,770 + Synpcc7942_0050 0.67 -0.7 51,811 - Synpcc7942_0050 0.68 -0.1 51,898 + Synpcc7942_0050 0.72 -1.3 51,899 + Synpcc7942_0050 0.72 +1.2 51,899 + Synpcc7942_0050 0.72 -0.1 51,918 + Synpcc7942_0050 0.73 +0.3 52,034 + Synpcc7942_0050 0.77 +0.3 52,042 - -0.1 52,098 - Synpcc7942_0050 0.80 -0.4 52,110 + Synpcc7942_0050 0.80 +0.7 52,118 - Synpcc7942_0050 0.80 -1.1 52,118 - Synpcc7942_0050 0.80 -1.1 52,118 - Synpcc7942_0050 0.80 -0.7 52,131 + Synpcc7942_0050 0.81 +1.5 52,280 + Synpcc7942_0050 0.87 +1.5 52,291 + Synpcc7942_0050 0.87 -0.1 52,353 + Synpcc7942_0050 0.90 -0.1 52,354 + Synpcc7942_0050 0.90 +1.8 52,362 - -0.1 52,381 - +0.2 52,428 - +1.2 52,430 - +0.3 52,685 - -2.1 52,691 + +0.3 52,700 + -2.9 52,724 + -2.1 52,724 + -3.3 52,724 + -1.1 52,724 + -1.5 52,732 - -3.1 52,732 - -0.3 52,732 - -2.7 52,788 - -2.1 52,850 + Synpcc7942_0051 0.13 -1.6 52,882 + Synpcc7942_0051 0.15 -1.1 52,898 + Synpcc7942_0051 0.15 -0.9 52,904 - Synpcc7942_0051 0.16 -0.1 52,928 - Synpcc7942_0051 0.17 -1.7 52,953 + Synpcc7942_0051 0.18 -1.4 52,953 - Synpcc7942_0051 0.18 -1.0 52,967 + Synpcc7942_0051 0.19 -0.6 52,967 + Synpcc7942_0051 0.19 -3.2 52,969 + Synpcc7942_0051 0.19 -3.6 52,975 - Synpcc7942_0051 0.19 +0.5 53,082 - Synpcc7942_0051 0.25 -3.0 53,154 - Synpcc7942_0051 0.29 -1.5 53,318 + Synpcc7942_0051 0.37 -3.0 53,318 + Synpcc7942_0051 0.37 -3.1 53,318 + Synpcc7942_0051 0.37 -2.1 53,325 - Synpcc7942_0051 0.38 -3.4 53,339 - Synpcc7942_0051 0.39 -1.1 53,412 + Synpcc7942_0051 0.42 -2.3 53,420 - Synpcc7942_0051 0.43 -2.9 53,691 + Synpcc7942_0051 0.57 -3.3 53,697 - Synpcc7942_0051 0.57 -2.1 53,816 + Synpcc7942_0051 0.64 -0.1 53,824 - Synpcc7942_0051 0.64 -1.5 53,892 - Synpcc7942_0051 0.68 -3.4 53,980 + Synpcc7942_0051 0.72 -2.9 54,026 + Synpcc7942_0051 0.75 -1.5 54,149 - Synpcc7942_0051 0.81 -0.5 54,316 + Synpcc7942_0051 0.90 -2.4 54,361 - -1.9 54,496 - -0.1 54,707 - Synpcc7942_0052 0.38 -0.7 54,755 - Synpcc7942_0052 0.47 +2.7 54,768 - Synpcc7942_0052 0.49 -2.3 54,768 - Synpcc7942_0052 0.49 -1.5 55,322 + Synpcc7942_0053 0.10 +2.5
Or see this region's nucleotide sequence