Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0041 and rpmB are separated by 109 nucleotides rpmB and Synpcc7942_0043 are separated by 39 nucleotides Synpcc7942_0043 and Synpcc7942_0044 overlap by 2 nucleotides
Synpcc7942_0041: Synpcc7942_0041 - probable transport protein, at 39,441 to 40,745
_0041
Synpcc7942_0042: rpmB - 50S ribosomal protein L28, at 40,855 to 41,091
rpmB
Synpcc7942_0043: Synpcc7942_0043 - hypothetical protein, at 41,131 to 41,496
_0043
Synpcc7942_0044: Synpcc7942_0044 - hypothetical protein, at 41,495 to 43,477
_0044
Position (kb) 40
41
42 Strain fitness (log2 ratio) -2
-1
0
1
2 at 39.858 kb on + strand, within Synpcc7942_0041 at 39.860 kb on - strand, within Synpcc7942_0041 at 39.860 kb on - strand, within Synpcc7942_0041 at 39.860 kb on - strand, within Synpcc7942_0041 at 39.860 kb on - strand, within Synpcc7942_0041 at 39.860 kb on - strand, within Synpcc7942_0041 at 39.878 kb on + strand, within Synpcc7942_0041 at 39.919 kb on + strand, within Synpcc7942_0041 at 39.926 kb on - strand, within Synpcc7942_0041 at 39.945 kb on - strand, within Synpcc7942_0041 at 39.949 kb on + strand, within Synpcc7942_0041 at 39.959 kb on + strand, within Synpcc7942_0041 at 39.971 kb on + strand, within Synpcc7942_0041 at 39.979 kb on - strand, within Synpcc7942_0041 at 40.006 kb on - strand, within Synpcc7942_0041 at 40.014 kb on + strand, within Synpcc7942_0041 at 40.059 kb on - strand, within Synpcc7942_0041 at 40.066 kb on + strand, within Synpcc7942_0041 at 40.105 kb on - strand, within Synpcc7942_0041 at 40.129 kb on - strand, within Synpcc7942_0041 at 40.132 kb on + strand, within Synpcc7942_0041 at 40.137 kb on + strand, within Synpcc7942_0041 at 40.145 kb on - strand, within Synpcc7942_0041 at 40.157 kb on + strand at 40.158 kb on + strand, within Synpcc7942_0041 at 40.177 kb on + strand, within Synpcc7942_0041 at 40.185 kb on - strand, within Synpcc7942_0041 at 40.185 kb on - strand, within Synpcc7942_0041 at 40.194 kb on - strand, within Synpcc7942_0041 at 40.249 kb on - strand, within Synpcc7942_0041 at 40.254 kb on + strand, within Synpcc7942_0041 at 40.276 kb on + strand at 40.281 kb on + strand, within Synpcc7942_0041 at 40.281 kb on + strand, within Synpcc7942_0041 at 40.286 kb on + strand, within Synpcc7942_0041 at 40.289 kb on - strand, within Synpcc7942_0041 at 40.289 kb on - strand, within Synpcc7942_0041 at 40.313 kb on + strand, within Synpcc7942_0041 at 40.321 kb on - strand, within Synpcc7942_0041 at 40.323 kb on + strand, within Synpcc7942_0041 at 40.330 kb on + strand, within Synpcc7942_0041 at 40.336 kb on + strand, within Synpcc7942_0041 at 40.336 kb on + strand, within Synpcc7942_0041 at 40.344 kb on - strand, within Synpcc7942_0041 at 40.344 kb on - strand, within Synpcc7942_0041 at 40.359 kb on + strand, within Synpcc7942_0041 at 40.368 kb on + strand, within Synpcc7942_0041 at 40.397 kb on - strand, within Synpcc7942_0041 at 40.406 kb on - strand, within Synpcc7942_0041 at 40.415 kb on + strand, within Synpcc7942_0041 at 40.423 kb on - strand, within Synpcc7942_0041 at 40.447 kb on + strand, within Synpcc7942_0041 at 40.490 kb on + strand, within Synpcc7942_0041 at 40.494 kb on - strand, within Synpcc7942_0041 at 40.516 kb on + strand, within Synpcc7942_0041 at 40.538 kb on + strand, within Synpcc7942_0041 at 40.541 kb on - strand, within Synpcc7942_0041 at 40.541 kb on - strand, within Synpcc7942_0041 at 40.546 kb on - strand, within Synpcc7942_0041 at 40.547 kb on + strand, within Synpcc7942_0041 at 40.550 kb on + strand, within Synpcc7942_0041 at 40.552 kb on + strand, within Synpcc7942_0041 at 40.558 kb on - strand, within Synpcc7942_0041 at 40.573 kb on - strand, within Synpcc7942_0041 at 40.583 kb on + strand, within Synpcc7942_0041 at 40.596 kb on - strand, within Synpcc7942_0041 at 40.596 kb on - strand, within Synpcc7942_0041 at 40.632 kb on - strand at 40.651 kb on + strand at 40.676 kb on + strand at 40.676 kb on + strand at 40.676 kb on + strand at 40.676 kb on + strand at 40.684 kb on - strand at 40.684 kb on - strand at 40.719 kb on + strand at 40.719 kb on - strand at 40.721 kb on + strand at 40.721 kb on + strand at 40.721 kb on + strand at 40.721 kb on + strand at 40.727 kb on - strand at 40.729 kb on - strand at 40.729 kb on - strand at 40.729 kb on - strand at 40.729 kb on - strand at 40.745 kb on + strand at 40.754 kb on - strand at 40.805 kb on + strand at 40.810 kb on + strand at 40.815 kb on + strand at 40.818 kb on - strand at 40.823 kb on - strand at 40.843 kb on - strand at 40.844 kb on - strand at 40.853 kb on + strand at 40.861 kb on - strand at 40.904 kb on + strand, within rpmB at 40.917 kb on - strand, within rpmB at 41.041 kb on + strand, within rpmB at 41.042 kb on + strand, within rpmB at 41.050 kb on - strand, within rpmB at 41.130 kb on + strand at 41.138 kb on + strand at 41.138 kb on - strand at 41.176 kb on + strand, within Synpcc7942_0043 at 41.192 kb on - strand, within Synpcc7942_0043 at 41.194 kb on + strand, within Synpcc7942_0043 at 41.212 kb on + strand, within Synpcc7942_0043 at 41.212 kb on + strand at 41.220 kb on - strand, within Synpcc7942_0043 at 41.256 kb on - strand, within Synpcc7942_0043 at 41.264 kb on - strand, within Synpcc7942_0043 at 41.277 kb on - strand, within Synpcc7942_0043 at 41.297 kb on - strand, within Synpcc7942_0043 at 41.321 kb on - strand, within Synpcc7942_0043 at 41.339 kb on + strand, within Synpcc7942_0043 at 41.339 kb on + strand, within Synpcc7942_0043 at 41.347 kb on - strand, within Synpcc7942_0043 at 41.372 kb on + strand, within Synpcc7942_0043 at 41.391 kb on - strand, within Synpcc7942_0043 at 41.415 kb on - strand, within Synpcc7942_0043 at 41.420 kb on - strand, within Synpcc7942_0043 at 41.440 kb on + strand, within Synpcc7942_0043 at 41.492 kb on + strand at 41.492 kb on + strand at 41.492 kb on + strand at 41.492 kb on + strand at 41.492 kb on + strand at 41.495 kb on - strand at 41.499 kb on + strand at 41.500 kb on - strand at 41.500 kb on - strand at 41.500 kb on - strand at 41.543 kb on + strand at 41.544 kb on - strand at 41.558 kb on - strand at 41.558 kb on - strand at 41.579 kb on - strand at 41.579 kb on - strand at 41.581 kb on + strand at 41.581 kb on + strand at 41.581 kb on - strand at 41.585 kb on + strand at 41.585 kb on + strand at 41.585 kb on + strand at 41.585 kb on + strand at 41.585 kb on + strand at 41.589 kb on - strand at 41.593 kb on - strand at 41.593 kb on - strand at 41.593 kb on - strand at 41.593 kb on - strand at 41.593 kb on - strand at 41.643 kb on + strand at 41.651 kb on - strand at 41.659 kb on - strand at 41.675 kb on - strand at 41.706 kb on - strand, within Synpcc7942_0044 at 41.710 kb on - strand, within Synpcc7942_0044 at 41.712 kb on + strand, within Synpcc7942_0044 at 41.717 kb on - strand, within Synpcc7942_0044 at 41.719 kb on + strand, within Synpcc7942_0044 at 41.719 kb on + strand, within Synpcc7942_0044 at 41.732 kb on - strand, within Synpcc7942_0044 at 41.732 kb on - strand, within Synpcc7942_0044 at 41.734 kb on + strand, within Synpcc7942_0044 at 41.734 kb on + strand, within Synpcc7942_0044 at 41.734 kb on + strand, within Synpcc7942_0044 at 41.742 kb on - strand, within Synpcc7942_0044 at 41.745 kb on + strand, within Synpcc7942_0044 at 41.785 kb on - strand, within Synpcc7942_0044 at 41.817 kb on - strand, within Synpcc7942_0044 at 41.826 kb on + strand, within Synpcc7942_0044 at 41.856 kb on + strand, within Synpcc7942_0044 at 41.891 kb on + strand, within Synpcc7942_0044 at 41.926 kb on - strand, within Synpcc7942_0044 at 41.959 kb on - strand, within Synpcc7942_0044 at 41.961 kb on - strand, within Synpcc7942_0044 at 41.988 kb on + strand, within Synpcc7942_0044 at 42.040 kb on + strand, within Synpcc7942_0044 at 42.040 kb on + strand at 42.040 kb on + strand, within Synpcc7942_0044 at 42.040 kb on + strand, within Synpcc7942_0044 at 42.040 kb on + strand, within Synpcc7942_0044 at 42.042 kb on + strand, within Synpcc7942_0044 at 42.042 kb on + strand, within Synpcc7942_0044 at 42.048 kb on - strand, within Synpcc7942_0044 at 42.048 kb on - strand, within Synpcc7942_0044 at 42.048 kb on - strand, within Synpcc7942_0044 at 42.048 kb on - strand, within Synpcc7942_0044 at 42.048 kb on - strand, within Synpcc7942_0044 at 42.048 kb on - strand, within Synpcc7942_0044 at 42.052 kb on + strand, within Synpcc7942_0044
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 39,858 + Synpcc7942_0041 0.32 -1.2 39,860 - Synpcc7942_0041 0.32 +0.3 39,860 - Synpcc7942_0041 0.32 -0.4 39,860 - Synpcc7942_0041 0.32 +0.3 39,860 - Synpcc7942_0041 0.32 -1.1 39,860 - Synpcc7942_0041 0.32 -0.1 39,878 + Synpcc7942_0041 0.33 -0.9 39,919 + Synpcc7942_0041 0.37 -0.7 39,926 - Synpcc7942_0041 0.37 -0.3 39,945 - Synpcc7942_0041 0.39 -0.3 39,949 + Synpcc7942_0041 0.39 -2.0 39,959 + Synpcc7942_0041 0.40 -0.4 39,971 + Synpcc7942_0041 0.41 +0.4 39,979 - Synpcc7942_0041 0.41 -0.4 40,006 - Synpcc7942_0041 0.43 +0.5 40,014 + Synpcc7942_0041 0.44 +1.5 40,059 - Synpcc7942_0041 0.47 +0.4 40,066 + Synpcc7942_0041 0.48 -0.3 40,105 - Synpcc7942_0041 0.51 -0.5 40,129 - Synpcc7942_0041 0.53 +0.2 40,132 + Synpcc7942_0041 0.53 -1.4 40,137 + Synpcc7942_0041 0.53 -1.1 40,145 - Synpcc7942_0041 0.54 +2.0 40,157 + -1.1 40,158 + Synpcc7942_0041 0.55 -1.3 40,177 + Synpcc7942_0041 0.56 -0.1 40,185 - Synpcc7942_0041 0.57 -0.6 40,185 - Synpcc7942_0041 0.57 -0.3 40,194 - Synpcc7942_0041 0.58 -1.7 40,249 - Synpcc7942_0041 0.62 +0.6 40,254 + Synpcc7942_0041 0.62 -1.1 40,276 + -0.1 40,281 + Synpcc7942_0041 0.64 +0.9 40,281 + Synpcc7942_0041 0.64 -1.1 40,286 + Synpcc7942_0041 0.65 -1.4 40,289 - Synpcc7942_0041 0.65 +0.0 40,289 - Synpcc7942_0041 0.65 -1.7 40,313 + Synpcc7942_0041 0.67 -0.3 40,321 - Synpcc7942_0041 0.67 -2.0 40,323 + Synpcc7942_0041 0.68 -0.8 40,330 + Synpcc7942_0041 0.68 -0.5 40,336 + Synpcc7942_0041 0.69 -0.1 40,336 + Synpcc7942_0041 0.69 -0.1 40,344 - Synpcc7942_0041 0.69 -0.8 40,344 - Synpcc7942_0041 0.69 -2.7 40,359 + Synpcc7942_0041 0.70 +0.6 40,368 + Synpcc7942_0041 0.71 +0.6 40,397 - Synpcc7942_0041 0.73 -1.4 40,406 - Synpcc7942_0041 0.74 -0.1 40,415 + Synpcc7942_0041 0.75 -0.2 40,423 - Synpcc7942_0041 0.75 -0.6 40,447 + Synpcc7942_0041 0.77 +1.2 40,490 + Synpcc7942_0041 0.80 +1.4 40,494 - Synpcc7942_0041 0.81 -1.5 40,516 + Synpcc7942_0041 0.82 +0.2 40,538 + Synpcc7942_0041 0.84 -1.3 40,541 - Synpcc7942_0041 0.84 -1.4 40,541 - Synpcc7942_0041 0.84 +0.2 40,546 - Synpcc7942_0041 0.85 -2.5 40,547 + Synpcc7942_0041 0.85 -1.7 40,550 + Synpcc7942_0041 0.85 -0.5 40,552 + Synpcc7942_0041 0.85 -1.1 40,558 - Synpcc7942_0041 0.86 -0.2 40,573 - Synpcc7942_0041 0.87 +0.9 40,583 + Synpcc7942_0041 0.88 +0.6 40,596 - Synpcc7942_0041 0.89 -1.5 40,596 - Synpcc7942_0041 0.89 -1.5 40,632 - -0.2 40,651 + -1.5 40,676 + -1.4 40,676 + +0.1 40,676 + +0.8 40,676 + +1.5 40,684 - -0.1 40,684 - -0.9 40,719 + -0.5 40,719 - +0.0 40,721 + -0.6 40,721 + -0.2 40,721 + -0.7 40,721 + +0.5 40,727 - +1.0 40,729 - +0.6 40,729 - -1.4 40,729 - -0.1 40,729 - +0.9 40,745 + -0.4 40,754 - +0.7 40,805 + -0.7 40,810 + +0.0 40,815 + +0.6 40,818 - -0.8 40,823 - +2.3 40,843 - -1.1 40,844 - +0.3 40,853 + -0.1 40,861 - +1.5 40,904 + rpmB Synpcc7942_0042 0.21 +1.2 40,917 - rpmB Synpcc7942_0042 0.26 -0.1 41,041 + rpmB Synpcc7942_0042 0.78 +1.1 41,042 + rpmB Synpcc7942_0042 0.79 -0.1 41,050 - rpmB Synpcc7942_0042 0.82 -0.6 41,130 + +0.9 41,138 + -1.1 41,138 - +1.6 41,176 + Synpcc7942_0043 0.12 +0.6 41,192 - Synpcc7942_0043 0.17 -1.1 41,194 + Synpcc7942_0043 0.17 +1.2 41,212 + Synpcc7942_0043 0.22 -0.8 41,212 + +0.9 41,220 - Synpcc7942_0043 0.24 +0.9 41,256 - Synpcc7942_0043 0.34 -0.1 41,264 - Synpcc7942_0043 0.36 +0.1 41,277 - Synpcc7942_0043 0.40 -1.1 41,297 - Synpcc7942_0043 0.45 +0.7 41,321 - Synpcc7942_0043 0.52 -2.1 41,339 + Synpcc7942_0043 0.57 -0.4 41,339 + Synpcc7942_0043 0.57 +0.5 41,347 - Synpcc7942_0043 0.59 -2.1 41,372 + Synpcc7942_0043 0.66 -2.7 41,391 - Synpcc7942_0043 0.71 -0.6 41,415 - Synpcc7942_0043 0.78 +0.7 41,420 - Synpcc7942_0043 0.79 +0.5 41,440 + Synpcc7942_0043 0.84 +0.1 41,492 + -0.1 41,492 + -0.5 41,492 + -1.7 41,492 + +0.4 41,492 + +0.9 41,495 - -1.3 41,499 + -0.3 41,500 - +0.5 41,500 - +0.1 41,500 - -0.1 41,543 + +0.2 41,544 - -0.8 41,558 - +1.5 41,558 - +0.9 41,579 - +0.6 41,579 - +0.3 41,581 + -2.7 41,581 + +0.4 41,581 - +1.5 41,585 + +0.9 41,585 + -1.1 41,585 + -1.1 41,585 + -0.8 41,585 + -0.0 41,589 - +1.1 41,593 - -1.9 41,593 - -0.1 41,593 - -0.1 41,593 - -0.1 41,593 - +1.6 41,643 + -2.6 41,651 - +0.3 41,659 - +2.7 41,675 - -0.1 41,706 - Synpcc7942_0044 0.11 -0.7 41,710 - Synpcc7942_0044 0.11 -1.3 41,712 + Synpcc7942_0044 0.11 -0.7 41,717 - Synpcc7942_0044 0.11 -0.1 41,719 + Synpcc7942_0044 0.11 +0.5 41,719 + Synpcc7942_0044 0.11 -1.7 41,732 - Synpcc7942_0044 0.12 -0.1 41,732 - Synpcc7942_0044 0.12 -1.1 41,734 + Synpcc7942_0044 0.12 +0.1 41,734 + Synpcc7942_0044 0.12 -0.6 41,734 + Synpcc7942_0044 0.12 -1.7 41,742 - Synpcc7942_0044 0.12 +1.6 41,745 + Synpcc7942_0044 0.13 +1.5 41,785 - Synpcc7942_0044 0.15 +0.3 41,817 - Synpcc7942_0044 0.16 -0.8 41,826 + Synpcc7942_0044 0.17 -0.1 41,856 + Synpcc7942_0044 0.18 +2.2 41,891 + Synpcc7942_0044 0.20 +1.4 41,926 - Synpcc7942_0044 0.22 -0.3 41,959 - Synpcc7942_0044 0.23 -1.3 41,961 - Synpcc7942_0044 0.23 +0.8 41,988 + Synpcc7942_0044 0.25 -1.1 42,040 + Synpcc7942_0044 0.27 -0.1 42,040 + -0.1 42,040 + Synpcc7942_0044 0.27 -0.8 42,040 + Synpcc7942_0044 0.27 -1.0 42,040 + Synpcc7942_0044 0.27 +0.3 42,042 + Synpcc7942_0044 0.28 +1.5 42,042 + Synpcc7942_0044 0.28 -0.2 42,048 - Synpcc7942_0044 0.28 -0.8 42,048 - Synpcc7942_0044 0.28 +1.3 42,048 - Synpcc7942_0044 0.28 -1.5 42,048 - Synpcc7942_0044 0.28 +0.9 42,048 - Synpcc7942_0044 0.28 +0.2 42,048 - Synpcc7942_0044 0.28 -0.5 42,052 + Synpcc7942_0044 0.28 -0.8
Or see this region's nucleotide sequence