Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bioA and Synpcc7942_0032 are separated by 110 nucleotides Synpcc7942_0032 and Synpcc7942_0033 overlap by 29 nucleotides Synpcc7942_0033 and Synpcc7942_0034 are separated by 178 nucleotides Synpcc7942_0034 and Synpcc7942_0035 are separated by 558 nucleotides
Synpcc7942_0031: bioA - aminotransferase, at 31,464 to 32,738
bioA
Synpcc7942_0032: Synpcc7942_0032 - hypothetical protein, at 32,849 to 33,202
_0032
Synpcc7942_0033: Synpcc7942_0033 - hypothetical protein, at 33,174 to 33,506
_0033
Synpcc7942_0034: Synpcc7942_0034 - N-acetylornithine aminotransferase, at 33,685 to 33,798
_0034
Synpcc7942_0035: Synpcc7942_0035 - hypothetical protein, at 34,357 to 35,115
_0035
Position (kb) 33
34 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.840 kb on - strand at 32.855 kb on - strand at 32.855 kb on - strand at 32.894 kb on - strand, within Synpcc7942_0032 at 32.919 kb on + strand, within Synpcc7942_0032 at 32.927 kb on - strand, within Synpcc7942_0032 at 33.047 kb on - strand, within Synpcc7942_0032 at 33.097 kb on + strand, within Synpcc7942_0032 at 33.097 kb on + strand, within Synpcc7942_0032 at 33.236 kb on + strand, within Synpcc7942_0033 at 33.254 kb on - strand, within Synpcc7942_0033 at 33.526 kb on + strand at 33.551 kb on + strand at 33.561 kb on + strand at 33.562 kb on + strand at 33.562 kb on + strand at 33.567 kb on + strand at 33.590 kb on - strand at 33.613 kb on + strand at 33.677 kb on + strand at 33.677 kb on + strand at 33.682 kb on + strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.685 kb on - strand at 33.734 kb on + strand, within Synpcc7942_0034 at 33.742 kb on - strand, within Synpcc7942_0034 at 33.904 kb on - strand at 34.092 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 32,840 - -1.2 32,855 - +0.2 32,855 - -0.1 32,894 - Synpcc7942_0032 0.13 +0.4 32,919 + Synpcc7942_0032 0.20 -1.3 32,927 - Synpcc7942_0032 0.22 +0.6 33,047 - Synpcc7942_0032 0.56 +0.4 33,097 + Synpcc7942_0032 0.70 +1.2 33,097 + Synpcc7942_0032 0.70 +0.4 33,236 + Synpcc7942_0033 0.19 -1.7 33,254 - Synpcc7942_0033 0.24 -2.1 33,526 + -0.7 33,551 + -0.4 33,561 + +0.4 33,562 + -0.3 33,562 + -0.0 33,567 + -0.1 33,590 - -1.4 33,613 + +0.9 33,677 + -0.7 33,677 + +0.0 33,682 + -1.2 33,685 - -1.1 33,685 - +0.0 33,685 - -0.4 33,685 - +0.1 33,685 - +0.9 33,685 - +0.3 33,685 - +0.5 33,685 - +0.7 33,734 + Synpcc7942_0034 0.43 +2.2 33,742 - Synpcc7942_0034 0.50 +0.9 33,904 - -0.8 34,092 + +1.4
Or see this region's nucleotide sequence