Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_613

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_611 and Pf1N1B4_612 are separated by 133 nucleotidesPf1N1B4_612 and Pf1N1B4_613 overlap by 4 nucleotidesPf1N1B4_613 and Pf1N1B4_614 are separated by 446 nucleotides Pf1N1B4_611 - CoA transferase, CAIB/BAIF family, at 705,554 to 706,885 _611 Pf1N1B4_612 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 707,019 to 707,882 _612 Pf1N1B4_613 - Arginine/ornithine antiporter ArcD, at 707,879 to 709,306 _613 Pf1N1B4_614 - Arginine/ornithine antiporter ArcD, at 709,753 to 711,180 _614 Position (kb) 707 708 709 710Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 706.997 kb on - strandat 707.063 kb on - strandat 707.209 kb on + strand, within Pf1N1B4_612at 707.210 kb on - strand, within Pf1N1B4_612at 707.210 kb on - strand, within Pf1N1B4_612at 707.210 kb on - strand, within Pf1N1B4_612at 707.210 kb on - strand, within Pf1N1B4_612at 707.210 kb on - strand, within Pf1N1B4_612at 707.397 kb on + strand, within Pf1N1B4_612at 707.397 kb on + strand, within Pf1N1B4_612at 707.398 kb on - strandat 707.398 kb on - strand, within Pf1N1B4_612at 707.398 kb on - strand, within Pf1N1B4_612at 707.398 kb on - strand, within Pf1N1B4_612at 707.398 kb on - strand, within Pf1N1B4_612at 707.398 kb on - strand, within Pf1N1B4_612at 707.777 kb on - strand, within Pf1N1B4_612at 707.851 kb on + strandat 707.852 kb on - strandat 707.901 kb on + strandat 707.902 kb on - strandat 707.902 kb on - strandat 707.902 kb on - strandat 707.902 kb on - strandat 707.902 kb on - strandat 707.902 kb on - strandat 707.969 kb on - strandat 708.027 kb on + strand, within Pf1N1B4_613at 708.028 kb on - strand, within Pf1N1B4_613at 708.070 kb on - strand, within Pf1N1B4_613at 708.070 kb on - strand, within Pf1N1B4_613at 708.070 kb on - strand, within Pf1N1B4_613at 708.070 kb on - strand, within Pf1N1B4_613at 708.148 kb on - strand, within Pf1N1B4_613at 708.148 kb on - strand, within Pf1N1B4_613at 708.148 kb on - strand, within Pf1N1B4_613at 708.148 kb on - strand, within Pf1N1B4_613at 708.148 kb on - strand, within Pf1N1B4_613at 708.181 kb on - strand, within Pf1N1B4_613at 708.199 kb on - strand, within Pf1N1B4_613at 708.199 kb on - strand, within Pf1N1B4_613at 708.199 kb on - strand, within Pf1N1B4_613at 708.199 kb on - strand, within Pf1N1B4_613at 708.228 kb on + strand, within Pf1N1B4_613at 708.228 kb on + strand, within Pf1N1B4_613at 708.229 kb on - strand, within Pf1N1B4_613at 708.229 kb on - strandat 708.243 kb on + strand, within Pf1N1B4_613at 708.243 kb on + strand, within Pf1N1B4_613at 708.243 kb on + strand, within Pf1N1B4_613at 708.243 kb on + strand, within Pf1N1B4_613at 708.243 kb on + strand, within Pf1N1B4_613at 708.243 kb on + strand, within Pf1N1B4_613at 708.243 kb on + strand, within Pf1N1B4_613at 708.244 kb on - strand, within Pf1N1B4_613at 708.244 kb on - strand, within Pf1N1B4_613at 708.244 kb on - strand, within Pf1N1B4_613at 708.244 kb on - strand, within Pf1N1B4_613at 708.437 kb on - strand, within Pf1N1B4_613at 708.481 kb on + strand, within Pf1N1B4_613at 708.481 kb on + strand, within Pf1N1B4_613at 708.481 kb on + strand, within Pf1N1B4_613at 708.482 kb on - strand, within Pf1N1B4_613at 708.592 kb on + strand, within Pf1N1B4_613at 708.649 kb on - strand, within Pf1N1B4_613at 709.054 kb on - strand, within Pf1N1B4_613at 709.054 kb on - strand, within Pf1N1B4_613at 709.054 kb on - strand, within Pf1N1B4_613at 709.054 kb on - strand, within Pf1N1B4_613at 709.083 kb on + strand, within Pf1N1B4_613at 709.083 kb on + strand, within Pf1N1B4_613at 709.083 kb on + strandat 709.083 kb on + strandat 709.083 kb on + strand, within Pf1N1B4_613at 709.084 kb on - strand, within Pf1N1B4_613at 709.084 kb on - strand, within Pf1N1B4_613at 709.084 kb on - strand, within Pf1N1B4_613at 709.084 kb on - strand, within Pf1N1B4_613at 709.084 kb on - strand, within Pf1N1B4_613at 709.084 kb on - strandat 709.084 kb on - strand, within Pf1N1B4_613at 709.335 kb on - strandat 709.374 kb on - strandat 709.385 kb on - strandat 709.422 kb on - strandat 709.425 kb on + strandat 709.426 kb on - strandat 709.473 kb on + strandat 709.473 kb on + strandat 709.474 kb on - strandat 709.529 kb on + strandat 709.540 kb on + strandat 709.541 kb on - strandat 709.541 kb on - strandat 709.643 kb on + strandat 709.643 kb on + strandat 709.652 kb on - strandat 709.882 kb on - strandat 709.976 kb on - strand, within Pf1N1B4_614at 710.005 kb on + strand, within Pf1N1B4_614at 710.065 kb on + strand, within Pf1N1B4_614at 710.065 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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706,997 - -1.3
707,063 - -0.0
707,209 + Pf1N1B4_612 0.22 -2.8
707,210 - Pf1N1B4_612 0.22 +1.0
707,210 - Pf1N1B4_612 0.22 -1.0
707,210 - Pf1N1B4_612 0.22 +2.0
707,210 - Pf1N1B4_612 0.22 -1.0
707,210 - Pf1N1B4_612 0.22 -0.0
707,397 + Pf1N1B4_612 0.44 +0.7
707,397 + Pf1N1B4_612 0.44 -0.6
707,398 - +2.6
707,398 - Pf1N1B4_612 0.44 +1.0
707,398 - Pf1N1B4_612 0.44 -2.0
707,398 - Pf1N1B4_612 0.44 -0.0
707,398 - Pf1N1B4_612 0.44 -0.6
707,398 - Pf1N1B4_612 0.44 -0.4
707,777 - Pf1N1B4_612 0.88 -0.0
707,851 + +2.0
707,852 - -0.2
707,901 + +1.6
707,902 - +1.0
707,902 - +0.5
707,902 - +0.4
707,902 - +2.0
707,902 - +1.5
707,902 - +0.3
707,969 - -1.2
708,027 + Pf1N1B4_613 0.10 -0.4
708,028 - Pf1N1B4_613 0.10 +0.8
708,070 - Pf1N1B4_613 0.13 -1.0
708,070 - Pf1N1B4_613 0.13 -2.3
708,070 - Pf1N1B4_613 0.13 -0.0
708,070 - Pf1N1B4_613 0.13 +3.0
708,148 - Pf1N1B4_613 0.19 +1.6
708,148 - Pf1N1B4_613 0.19 -1.6
708,148 - Pf1N1B4_613 0.19 -0.0
708,148 - Pf1N1B4_613 0.19 -1.0
708,148 - Pf1N1B4_613 0.19 +0.4
708,181 - Pf1N1B4_613 0.21 +2.6
708,199 - Pf1N1B4_613 0.22 -0.5
708,199 - Pf1N1B4_613 0.22 -2.3
708,199 - Pf1N1B4_613 0.22 -0.3
708,199 - Pf1N1B4_613 0.22 -0.6
708,228 + Pf1N1B4_613 0.24 -0.6
708,228 + Pf1N1B4_613 0.24 +0.6
708,229 - Pf1N1B4_613 0.25 -0.0
708,229 - +1.6
708,243 + Pf1N1B4_613 0.25 -1.0
708,243 + Pf1N1B4_613 0.25 -2.0
708,243 + Pf1N1B4_613 0.25 -0.4
708,243 + Pf1N1B4_613 0.25 -0.4
708,243 + Pf1N1B4_613 0.25 -2.6
708,243 + Pf1N1B4_613 0.25 +1.8
708,243 + Pf1N1B4_613 0.25 +0.3
708,244 - Pf1N1B4_613 0.26 +0.7
708,244 - Pf1N1B4_613 0.26 -1.0
708,244 - Pf1N1B4_613 0.26 +0.3
708,244 - Pf1N1B4_613 0.26 +0.6
708,437 - Pf1N1B4_613 0.39 -0.0
708,481 + Pf1N1B4_613 0.42 +1.0
708,481 + Pf1N1B4_613 0.42 -1.0
708,481 + Pf1N1B4_613 0.42 -1.0
708,482 - Pf1N1B4_613 0.42 +1.4
708,592 + Pf1N1B4_613 0.50 -0.6
708,649 - Pf1N1B4_613 0.54 -1.0
709,054 - Pf1N1B4_613 0.82 +1.6
709,054 - Pf1N1B4_613 0.82 +1.6
709,054 - Pf1N1B4_613 0.82 -0.0
709,054 - Pf1N1B4_613 0.82 -0.0
709,083 + Pf1N1B4_613 0.84 +0.7
709,083 + Pf1N1B4_613 0.84 -0.0
709,083 + +1.6
709,083 + -0.0
709,083 + Pf1N1B4_613 0.84 -1.0
709,084 - Pf1N1B4_613 0.84 -0.6
709,084 - Pf1N1B4_613 0.84 +0.5
709,084 - Pf1N1B4_613 0.84 -0.0
709,084 - Pf1N1B4_613 0.84 -1.0
709,084 - Pf1N1B4_613 0.84 +0.3
709,084 - +2.2
709,084 - Pf1N1B4_613 0.84 +0.4
709,335 - +0.3
709,374 - -2.6
709,385 - -0.0
709,422 - -1.6
709,425 + -0.0
709,426 - +0.2
709,473 + -0.0
709,473 + -0.4
709,474 - -1.8
709,529 + -2.0
709,540 + +0.7
709,541 - -1.0
709,541 - -0.3
709,643 + -1.6
709,643 + +0.0
709,652 - +0.4
709,882 - +1.3
709,976 - Pf1N1B4_614 0.16 +1.0
710,005 + Pf1N1B4_614 0.18 -2.3
710,065 + Pf1N1B4_614 0.22 -0.3
710,065 + +0.0

Or see this region's nucleotide sequence