Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_6047

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_6046 and Pf1N1B4_6055 are separated by 267 nucleotidesPf1N1B4_6055 and Pf1N1B4_6047 are separated by 183 nucleotidesPf1N1B4_6047 and Pf1N1B4_6048 are separated by 115 nucleotides Pf1N1B4_6046 - hypothetical protein, at 511,352 to 512,371 _6046 Pf1N1B4_6055 - tRNA-Val-GAC, at 512,639 to 512,712 _6055 Pf1N1B4_6047 - Nucleoside-diphosphate-sugar epimerases, at 512,896 to 514,179 _6047 Pf1N1B4_6048 - TonB-dependent ferric achromobactin receptor protein, at 514,295 to 516,718 _6048 Position (kb) 512 513 514 515Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 511.900 kb on - strand, within Pf1N1B4_6046at 511.900 kb on - strand, within Pf1N1B4_6046at 511.900 kb on - strand, within Pf1N1B4_6046at 512.214 kb on + strand, within Pf1N1B4_6046at 512.315 kb on - strandat 512.775 kb on + strandat 512.874 kb on + strandat 512.875 kb on - strandat 512.875 kb on - strandat 512.877 kb on - strandat 512.924 kb on - strandat 512.927 kb on - strandat 512.945 kb on + strandat 512.978 kb on + strandat 512.979 kb on - strandat 512.979 kb on - strandat 512.979 kb on - strandat 512.979 kb on - strandat 512.979 kb on - strandat 513.130 kb on + strand, within Pf1N1B4_6047at 513.130 kb on + strand, within Pf1N1B4_6047at 513.131 kb on - strand, within Pf1N1B4_6047at 513.131 kb on - strand, within Pf1N1B4_6047at 513.186 kb on - strand, within Pf1N1B4_6047at 513.241 kb on + strand, within Pf1N1B4_6047at 513.241 kb on + strand, within Pf1N1B4_6047at 513.241 kb on + strand, within Pf1N1B4_6047at 513.349 kb on - strand, within Pf1N1B4_6047at 513.406 kb on + strand, within Pf1N1B4_6047at 513.406 kb on + strand, within Pf1N1B4_6047at 513.406 kb on + strand, within Pf1N1B4_6047at 513.407 kb on - strand, within Pf1N1B4_6047at 513.441 kb on + strand, within Pf1N1B4_6047at 513.441 kb on + strand, within Pf1N1B4_6047at 513.442 kb on - strand, within Pf1N1B4_6047at 513.505 kb on + strand, within Pf1N1B4_6047at 513.505 kb on + strand, within Pf1N1B4_6047at 513.556 kb on + strandat 513.556 kb on + strand, within Pf1N1B4_6047at 513.556 kb on + strand, within Pf1N1B4_6047at 513.556 kb on + strand, within Pf1N1B4_6047at 513.556 kb on + strand, within Pf1N1B4_6047at 513.556 kb on + strand, within Pf1N1B4_6047at 513.556 kb on + strand, within Pf1N1B4_6047at 513.556 kb on + strand, within Pf1N1B4_6047at 513.556 kb on + strand, within Pf1N1B4_6047at 513.557 kb on - strand, within Pf1N1B4_6047at 513.557 kb on - strand, within Pf1N1B4_6047at 513.557 kb on - strand, within Pf1N1B4_6047at 513.557 kb on - strandat 513.559 kb on - strandat 513.610 kb on + strand, within Pf1N1B4_6047at 513.610 kb on + strand, within Pf1N1B4_6047at 513.611 kb on - strandat 513.724 kb on + strand, within Pf1N1B4_6047at 513.741 kb on + strand, within Pf1N1B4_6047at 513.742 kb on - strand, within Pf1N1B4_6047at 513.742 kb on - strand, within Pf1N1B4_6047at 513.742 kb on - strand, within Pf1N1B4_6047at 513.745 kb on + strand, within Pf1N1B4_6047at 513.745 kb on + strand, within Pf1N1B4_6047at 513.746 kb on - strand, within Pf1N1B4_6047at 513.746 kb on - strand, within Pf1N1B4_6047at 513.757 kb on + strand, within Pf1N1B4_6047at 513.757 kb on + strandat 513.758 kb on - strand, within Pf1N1B4_6047at 513.970 kb on + strandat 513.970 kb on + strand, within Pf1N1B4_6047at 513.970 kb on + strand, within Pf1N1B4_6047at 513.970 kb on + strand, within Pf1N1B4_6047at 513.970 kb on + strand, within Pf1N1B4_6047at 513.970 kb on + strand, within Pf1N1B4_6047at 513.970 kb on + strand, within Pf1N1B4_6047at 513.971 kb on - strand, within Pf1N1B4_6047at 513.971 kb on - strand, within Pf1N1B4_6047at 513.973 kb on + strand, within Pf1N1B4_6047at 513.973 kb on + strand, within Pf1N1B4_6047at 513.973 kb on + strand, within Pf1N1B4_6047at 513.973 kb on + strandat 514.006 kb on + strand, within Pf1N1B4_6047at 514.006 kb on + strand, within Pf1N1B4_6047at 514.006 kb on + strand, within Pf1N1B4_6047at 514.006 kb on + strand, within Pf1N1B4_6047at 514.006 kb on + strand, within Pf1N1B4_6047at 514.006 kb on + strand, within Pf1N1B4_6047at 514.006 kb on + strand, within Pf1N1B4_6047at 514.006 kb on + strand, within Pf1N1B4_6047at 514.006 kb on + strand, within Pf1N1B4_6047at 514.006 kb on + strand, within Pf1N1B4_6047at 514.007 kb on - strand, within Pf1N1B4_6047at 514.007 kb on - strand, within Pf1N1B4_6047at 514.007 kb on - strand, within Pf1N1B4_6047at 514.007 kb on - strand, within Pf1N1B4_6047at 514.007 kb on - strand, within Pf1N1B4_6047at 514.007 kb on - strand, within Pf1N1B4_6047at 514.007 kb on - strand, within Pf1N1B4_6047at 514.007 kb on - strand, within Pf1N1B4_6047at 514.007 kb on - strand, within Pf1N1B4_6047at 514.008 kb on + strand, within Pf1N1B4_6047at 514.008 kb on + strandat 514.008 kb on + strand, within Pf1N1B4_6047at 514.008 kb on + strand, within Pf1N1B4_6047at 514.008 kb on + strand, within Pf1N1B4_6047at 514.008 kb on + strand, within Pf1N1B4_6047at 514.009 kb on - strandat 514.028 kb on + strandat 514.028 kb on + strand, within Pf1N1B4_6047at 514.119 kb on + strandat 514.120 kb on - strandat 514.147 kb on + strandat 514.151 kb on - strandat 514.228 kb on + strandat 514.229 kb on - strandat 514.229 kb on - strandat 514.259 kb on + strandat 514.259 kb on + strandat 514.259 kb on + strandat 514.259 kb on + strandat 514.260 kb on - strandat 514.273 kb on + strandat 514.273 kb on + strandat 514.285 kb on + strandat 514.286 kb on - strandat 514.323 kb on + strandat 514.324 kb on - strandat 514.324 kb on - strandat 514.324 kb on - strandat 514.324 kb on - strandat 514.324 kb on - strandat 514.390 kb on - strandat 514.568 kb on + strand, within Pf1N1B4_6048at 514.608 kb on + strand, within Pf1N1B4_6048at 514.608 kb on + strand, within Pf1N1B4_6048at 514.609 kb on - strand, within Pf1N1B4_6048at 514.609 kb on - strand, within Pf1N1B4_6048at 514.609 kb on - strand, within Pf1N1B4_6048at 514.609 kb on - strand, within Pf1N1B4_6048at 514.609 kb on - strand, within Pf1N1B4_6048at 514.641 kb on + strand, within Pf1N1B4_6048at 514.641 kb on + strand, within Pf1N1B4_6048at 514.642 kb on - strand, within Pf1N1B4_6048at 514.642 kb on - strand, within Pf1N1B4_6048at 514.681 kb on - strand, within Pf1N1B4_6048at 514.681 kb on - strand, within Pf1N1B4_6048at 514.681 kb on - strand, within Pf1N1B4_6048at 514.681 kb on - strand, within Pf1N1B4_6048at 514.681 kb on - strand, within Pf1N1B4_6048at 514.681 kb on - strand, within Pf1N1B4_6048at 514.681 kb on - strand, within Pf1N1B4_6048at 514.681 kb on - strand, within Pf1N1B4_6048at 514.800 kb on + strand, within Pf1N1B4_6048at 514.857 kb on + strand, within Pf1N1B4_6048at 514.857 kb on + strand, within Pf1N1B4_6048at 514.858 kb on - strandat 514.962 kb on + strand, within Pf1N1B4_6048at 514.962 kb on + strand, within Pf1N1B4_6048at 514.962 kb on + strand, within Pf1N1B4_6048at 514.962 kb on + strand, within Pf1N1B4_6048at 514.963 kb on - strand, within Pf1N1B4_6048at 514.963 kb on - strandat 514.963 kb on - strandat 514.963 kb on - strand, within Pf1N1B4_6048at 514.963 kb on - strand, within Pf1N1B4_6048at 514.963 kb on - strand, within Pf1N1B4_6048at 514.963 kb on - strand, within Pf1N1B4_6048at 514.963 kb on - strand, within Pf1N1B4_6048at 514.971 kb on + strand, within Pf1N1B4_6048at 514.971 kb on + strand, within Pf1N1B4_6048at 514.972 kb on - strand, within Pf1N1B4_6048at 515.037 kb on + strand, within Pf1N1B4_6048at 515.037 kb on + strand, within Pf1N1B4_6048at 515.178 kb on + strand, within Pf1N1B4_6048at 515.178 kb on + strand, within Pf1N1B4_6048at 515.179 kb on - strand, within Pf1N1B4_6048

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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511,900 - Pf1N1B4_6046 0.54 -0.9
511,900 - Pf1N1B4_6046 0.54 +0.2
511,900 - Pf1N1B4_6046 0.54 +0.0
512,214 + Pf1N1B4_6046 0.85 +0.2
512,315 - +0.7
512,775 + -1.2
512,874 + +0.7
512,875 - +0.4
512,875 - +2.0
512,877 - +0.1
512,924 - +1.5
512,927 - -0.9
512,945 + +1.2
512,978 + +0.7
512,979 - +0.5
512,979 - +2.2
512,979 - -0.9
512,979 - +0.4
512,979 - -0.8
513,130 + Pf1N1B4_6047 0.18 +0.1
513,130 + Pf1N1B4_6047 0.18 +1.0
513,131 - Pf1N1B4_6047 0.18 -1.0
513,131 - Pf1N1B4_6047 0.18 -1.2
513,186 - Pf1N1B4_6047 0.23 +0.0
513,241 + Pf1N1B4_6047 0.27 +0.7
513,241 + Pf1N1B4_6047 0.27 -0.1
513,241 + Pf1N1B4_6047 0.27 -1.3
513,349 - Pf1N1B4_6047 0.35 +2.5
513,406 + Pf1N1B4_6047 0.40 -1.2
513,406 + Pf1N1B4_6047 0.40 +0.7
513,406 + Pf1N1B4_6047 0.40 +1.0
513,407 - Pf1N1B4_6047 0.40 -0.7
513,441 + Pf1N1B4_6047 0.42 +0.2
513,441 + Pf1N1B4_6047 0.42 -0.3
513,442 - Pf1N1B4_6047 0.43 -0.0
513,505 + Pf1N1B4_6047 0.47 +1.7
513,505 + Pf1N1B4_6047 0.47 -0.3
513,556 + +2.0
513,556 + Pf1N1B4_6047 0.51 -0.3
513,556 + Pf1N1B4_6047 0.51 +0.7
513,556 + Pf1N1B4_6047 0.51 -0.9
513,556 + Pf1N1B4_6047 0.51 -0.7
513,556 + Pf1N1B4_6047 0.51 +0.9
513,556 + Pf1N1B4_6047 0.51 -0.1
513,556 + Pf1N1B4_6047 0.51 -1.7
513,556 + Pf1N1B4_6047 0.51 -1.2
513,557 - Pf1N1B4_6047 0.51 -0.7
513,557 - Pf1N1B4_6047 0.51 -0.6
513,557 - Pf1N1B4_6047 0.51 +2.5
513,557 - -0.3
513,559 - -1.3
513,610 + Pf1N1B4_6047 0.56 -0.3
513,610 + Pf1N1B4_6047 0.56 +1.2
513,611 - +0.7
513,724 + Pf1N1B4_6047 0.64 +1.2
513,741 + Pf1N1B4_6047 0.66 -1.8
513,742 - Pf1N1B4_6047 0.66 +0.7
513,742 - Pf1N1B4_6047 0.66 -0.1
513,742 - Pf1N1B4_6047 0.66 -3.2
513,745 + Pf1N1B4_6047 0.66 -1.6
513,745 + Pf1N1B4_6047 0.66 +0.1
513,746 - Pf1N1B4_6047 0.66 -1.3
513,746 - Pf1N1B4_6047 0.66 -0.3
513,757 + Pf1N1B4_6047 0.67 +1.2
513,757 + +2.0
513,758 - Pf1N1B4_6047 0.67 -0.8
513,970 + -2.3
513,970 + Pf1N1B4_6047 0.84 -0.6
513,970 + Pf1N1B4_6047 0.84 +0.7
513,970 + Pf1N1B4_6047 0.84 -0.7
513,970 + Pf1N1B4_6047 0.84 +0.4
513,970 + Pf1N1B4_6047 0.84 +1.4
513,970 + Pf1N1B4_6047 0.84 -0.3
513,971 - Pf1N1B4_6047 0.84 +2.0
513,971 - Pf1N1B4_6047 0.84 -1.9
513,973 + Pf1N1B4_6047 0.84 -0.1
513,973 + Pf1N1B4_6047 0.84 +0.4
513,973 + Pf1N1B4_6047 0.84 +0.7
513,973 + -0.9
514,006 + Pf1N1B4_6047 0.86 +1.6
514,006 + Pf1N1B4_6047 0.86 -1.2
514,006 + Pf1N1B4_6047 0.86 -1.9
514,006 + Pf1N1B4_6047 0.86 +0.3
514,006 + Pf1N1B4_6047 0.86 -0.3
514,006 + Pf1N1B4_6047 0.86 +0.1
514,006 + Pf1N1B4_6047 0.86 +0.1
514,006 + Pf1N1B4_6047 0.86 +0.0
514,006 + Pf1N1B4_6047 0.86 -1.2
514,006 + Pf1N1B4_6047 0.86 -1.3
514,007 - Pf1N1B4_6047 0.87 -1.7
514,007 - Pf1N1B4_6047 0.87 -1.7
514,007 - Pf1N1B4_6047 0.87 -0.8
514,007 - Pf1N1B4_6047 0.87 -0.8
514,007 - Pf1N1B4_6047 0.87 +1.2
514,007 - Pf1N1B4_6047 0.87 +1.4
514,007 - Pf1N1B4_6047 0.87 -1.7
514,007 - Pf1N1B4_6047 0.87 +1.7
514,007 - Pf1N1B4_6047 0.87 -0.3
514,008 + Pf1N1B4_6047 0.87 +0.6
514,008 + -0.3
514,008 + Pf1N1B4_6047 0.87 -0.0
514,008 + Pf1N1B4_6047 0.87 +1.2
514,008 + Pf1N1B4_6047 0.87 +0.1
514,008 + Pf1N1B4_6047 0.87 -1.7
514,009 - +1.2
514,028 + +0.2
514,028 + Pf1N1B4_6047 0.88 +0.5
514,119 + +0.7
514,120 - -0.7
514,147 + -0.1
514,151 - -0.3
514,228 + -0.9
514,229 - -0.9
514,229 - -0.3
514,259 + +0.7
514,259 + +0.7
514,259 + +0.8
514,259 + +1.2
514,260 - -0.1
514,273 + -0.3
514,273 + +0.1
514,285 + -1.8
514,286 - -0.9
514,323 + -0.9
514,324 - +0.4
514,324 - -0.1
514,324 - -1.2
514,324 - -0.3
514,324 - +0.7
514,390 - +0.1
514,568 + Pf1N1B4_6048 0.11 -1.3
514,608 + Pf1N1B4_6048 0.13 -1.1
514,608 + Pf1N1B4_6048 0.13 -2.9
514,609 - Pf1N1B4_6048 0.13 -1.3
514,609 - Pf1N1B4_6048 0.13 +1.0
514,609 - Pf1N1B4_6048 0.13 -0.3
514,609 - Pf1N1B4_6048 0.13 -1.9
514,609 - Pf1N1B4_6048 0.13 +2.0
514,641 + Pf1N1B4_6048 0.14 -0.1
514,641 + Pf1N1B4_6048 0.14 -1.7
514,642 - Pf1N1B4_6048 0.14 -0.3
514,642 - Pf1N1B4_6048 0.14 -0.9
514,681 - Pf1N1B4_6048 0.16 -0.9
514,681 - Pf1N1B4_6048 0.16 -1.3
514,681 - Pf1N1B4_6048 0.16 +1.8
514,681 - Pf1N1B4_6048 0.16 -1.3
514,681 - Pf1N1B4_6048 0.16 +1.2
514,681 - Pf1N1B4_6048 0.16 +0.1
514,681 - Pf1N1B4_6048 0.16 -0.3
514,681 - Pf1N1B4_6048 0.16 +0.0
514,800 + Pf1N1B4_6048 0.21 +0.4
514,857 + Pf1N1B4_6048 0.23 -0.3
514,857 + Pf1N1B4_6048 0.23 +0.7
514,858 - -0.9
514,962 + Pf1N1B4_6048 0.28 -0.3
514,962 + Pf1N1B4_6048 0.28 -0.3
514,962 + Pf1N1B4_6048 0.28 -1.9
514,962 + Pf1N1B4_6048 0.28 +0.1
514,963 - Pf1N1B4_6048 0.28 +0.4
514,963 - +0.7
514,963 - +0.1
514,963 - Pf1N1B4_6048 0.28 +0.1
514,963 - Pf1N1B4_6048 0.28 -0.3
514,963 - Pf1N1B4_6048 0.28 -1.1
514,963 - Pf1N1B4_6048 0.28 +0.8
514,963 - Pf1N1B4_6048 0.28 +0.4
514,971 + Pf1N1B4_6048 0.28 +0.7
514,971 + Pf1N1B4_6048 0.28 +0.8
514,972 - Pf1N1B4_6048 0.28 +1.0
515,037 + Pf1N1B4_6048 0.31 +0.8
515,037 + Pf1N1B4_6048 0.31 -0.0
515,178 + Pf1N1B4_6048 0.36 -0.8
515,178 + Pf1N1B4_6048 0.36 +0.1
515,179 - Pf1N1B4_6048 0.36 +1.1

Or see this region's nucleotide sequence