Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5600

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5599 and Pf1N1B4_5600 are separated by 91 nucleotidesPf1N1B4_5600 and Pf1N1B4_5601 are separated by 39 nucleotides Pf1N1B4_5599 - transcriptional regulator, TetR family, at 21,783 to 22,394 _5599 Pf1N1B4_5600 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 22,486 to 23,589 _5600 Pf1N1B4_5601 - FIG00966546: hypothetical protein, at 23,629 to 24,966 _5601 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 21.621 kb on + strandat 21.934 kb on - strandat 22.063 kb on + strand, within Pf1N1B4_5599at 22.064 kb on - strand, within Pf1N1B4_5599at 22.351 kb on + strandat 22.359 kb on - strandat 22.377 kb on + strandat 22.592 kb on + strandat 22.592 kb on + strandat 22.592 kb on + strandat 22.592 kb on + strandat 22.592 kb on + strandat 22.592 kb on + strandat 22.593 kb on - strandat 22.593 kb on - strandat 22.593 kb on - strandat 22.593 kb on - strandat 22.593 kb on - strandat 22.593 kb on - strandat 22.593 kb on - strandat 22.593 kb on - strandat 22.593 kb on - strandat 22.606 kb on - strand, within Pf1N1B4_5600at 22.707 kb on - strand, within Pf1N1B4_5600at 22.707 kb on - strand, within Pf1N1B4_5600at 22.707 kb on - strand, within Pf1N1B4_5600at 22.721 kb on + strand, within Pf1N1B4_5600at 22.721 kb on + strand, within Pf1N1B4_5600at 22.721 kb on + strand, within Pf1N1B4_5600at 22.722 kb on - strand, within Pf1N1B4_5600at 22.932 kb on - strand, within Pf1N1B4_5600at 22.932 kb on - strand, within Pf1N1B4_5600at 23.018 kb on + strand, within Pf1N1B4_5600at 23.019 kb on - strandat 23.019 kb on - strand, within Pf1N1B4_5600at 23.019 kb on - strand, within Pf1N1B4_5600at 23.019 kb on - strand, within Pf1N1B4_5600at 23.199 kb on - strandat 23.210 kb on + strand, within Pf1N1B4_5600at 23.424 kb on - strand, within Pf1N1B4_5600at 23.424 kb on - strand, within Pf1N1B4_5600at 23.551 kb on + strandat 23.552 kb on - strandat 23.571 kb on + strandat 23.630 kb on + strandat 23.634 kb on - strandat 23.648 kb on + strandat 23.648 kb on + strandat 23.649 kb on - strandat 23.649 kb on - strandat 23.724 kb on - strandat 23.736 kb on + strandat 23.739 kb on - strandat 23.739 kb on - strandat 23.819 kb on + strand, within Pf1N1B4_5601at 23.846 kb on + strand, within Pf1N1B4_5601at 23.933 kb on + strand, within Pf1N1B4_5601at 23.933 kb on + strandat 24.128 kb on + strand, within Pf1N1B4_5601at 24.227 kb on + strand, within Pf1N1B4_5601at 24.227 kb on + strand, within Pf1N1B4_5601at 24.228 kb on - strand, within Pf1N1B4_5601at 24.333 kb on - strand, within Pf1N1B4_5601at 24.533 kb on + strand, within Pf1N1B4_5601at 24.533 kb on + strand, within Pf1N1B4_5601at 24.534 kb on - strand, within Pf1N1B4_5601at 24.584 kb on + strand, within Pf1N1B4_5601at 24.585 kb on - strand, within Pf1N1B4_5601

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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21,621 + -0.1
21,934 - -0.4
22,063 + Pf1N1B4_5599 0.46 -0.9
22,064 - Pf1N1B4_5599 0.46 +1.2
22,351 + -0.9
22,359 - -0.3
22,377 + -0.0
22,592 + -0.4
22,592 + +0.2
22,592 + +0.9
22,592 + +0.6
22,592 + -0.0
22,592 + +1.2
22,593 - -0.2
22,593 - +0.6
22,593 - +0.6
22,593 - +0.1
22,593 - -0.4
22,593 - +1.6
22,593 - +0.2
22,593 - +0.6
22,593 - +0.6
22,606 - Pf1N1B4_5600 0.11 +2.4
22,707 - Pf1N1B4_5600 0.20 -0.0
22,707 - Pf1N1B4_5600 0.20 +0.6
22,707 - Pf1N1B4_5600 0.20 +0.6
22,721 + Pf1N1B4_5600 0.21 -0.1
22,721 + Pf1N1B4_5600 0.21 +0.6
22,721 + Pf1N1B4_5600 0.21 +1.0
22,722 - Pf1N1B4_5600 0.21 +0.2
22,932 - Pf1N1B4_5600 0.40 -0.4
22,932 - Pf1N1B4_5600 0.40 -0.4
23,018 + Pf1N1B4_5600 0.48 +1.4
23,019 - +1.6
23,019 - Pf1N1B4_5600 0.48 +0.2
23,019 - Pf1N1B4_5600 0.48 -1.9
23,019 - Pf1N1B4_5600 0.48 +0.2
23,199 - +2.4
23,210 + Pf1N1B4_5600 0.66 -0.4
23,424 - Pf1N1B4_5600 0.85 -1.4
23,424 - Pf1N1B4_5600 0.85 +0.3
23,551 + +1.2
23,552 - +0.6
23,571 + -1.4
23,630 + +0.6
23,634 - -0.9
23,648 + +0.6
23,648 + -0.4
23,649 - -0.0
23,649 - -0.4
23,724 - +0.4
23,736 + +0.2
23,739 - +2.2
23,739 - +0.1
23,819 + Pf1N1B4_5601 0.14 +1.2
23,846 + Pf1N1B4_5601 0.16 +0.2
23,933 + Pf1N1B4_5601 0.23 +0.9
23,933 + -0.4
24,128 + Pf1N1B4_5601 0.37 -0.4
24,227 + Pf1N1B4_5601 0.45 +0.4
24,227 + Pf1N1B4_5601 0.45 +0.2
24,228 - Pf1N1B4_5601 0.45 -0.4
24,333 - Pf1N1B4_5601 0.53 -0.4
24,533 + Pf1N1B4_5601 0.68 -1.6
24,533 + Pf1N1B4_5601 0.68 -2.4
24,534 - Pf1N1B4_5601 0.68 +1.6
24,584 + Pf1N1B4_5601 0.71 +1.2
24,585 - Pf1N1B4_5601 0.71 -0.4

Or see this region's nucleotide sequence