Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4993 and Pf1N1B4_4994 are separated by 168 nucleotides Pf1N1B4_4994 and Pf1N1B4_4995 are separated by 30 nucleotides
Pf1N1B4_4993 - Arabinose efflux permease, at 5,539,704 to 5,540,849
_4993
Pf1N1B4_4994 - Putrescine/proton symporter, putrescine/ornithine antiporter PotE, at 5,541,018 to 5,542,349
_4994
Pf1N1B4_4995 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 5,542,380 to 5,543,303
_4995
Position (kb) 5541
5542
5543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5540.198 kb on - strand, within Pf1N1B4_4993 at 5540.343 kb on + strand, within Pf1N1B4_4993 at 5540.950 kb on + strand at 5541.208 kb on - strand, within Pf1N1B4_4994 at 5541.208 kb on - strand, within Pf1N1B4_4994 at 5541.208 kb on - strand, within Pf1N1B4_4994 at 5541.283 kb on - strand, within Pf1N1B4_4994 at 5541.288 kb on + strand, within Pf1N1B4_4994 at 5541.289 kb on - strand, within Pf1N1B4_4994 at 5541.593 kb on + strand, within Pf1N1B4_4994 at 5541.596 kb on + strand, within Pf1N1B4_4994 at 5541.596 kb on + strand, within Pf1N1B4_4994 at 5541.597 kb on - strand, within Pf1N1B4_4994 at 5541.612 kb on - strand, within Pf1N1B4_4994 at 5541.729 kb on + strand, within Pf1N1B4_4994 at 5541.811 kb on - strand at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.818 kb on + strand, within Pf1N1B4_4994 at 5541.819 kb on - strand, within Pf1N1B4_4994 at 5541.819 kb on - strand, within Pf1N1B4_4994 at 5541.819 kb on - strand, within Pf1N1B4_4994 at 5541.819 kb on - strand, within Pf1N1B4_4994 at 5541.819 kb on - strand at 5541.819 kb on - strand at 5542.107 kb on + strand, within Pf1N1B4_4994 at 5542.107 kb on + strand at 5542.108 kb on - strand, within Pf1N1B4_4994 at 5542.108 kb on - strand, within Pf1N1B4_4994 at 5542.143 kb on + strand, within Pf1N1B4_4994 at 5542.144 kb on - strand, within Pf1N1B4_4994 at 5542.144 kb on - strand at 5542.170 kb on + strand, within Pf1N1B4_4994 at 5542.170 kb on + strand, within Pf1N1B4_4994 at 5542.171 kb on - strand, within Pf1N1B4_4994 at 5542.171 kb on - strand, within Pf1N1B4_4994 at 5542.190 kb on - strand, within Pf1N1B4_4994 at 5542.219 kb on - strand at 5542.219 kb on - strand at 5542.291 kb on - strand at 5542.353 kb on + strand at 5542.406 kb on - strand at 5542.406 kb on - strand at 5542.502 kb on + strand, within Pf1N1B4_4995 at 5542.503 kb on - strand at 5542.576 kb on - strand, within Pf1N1B4_4995 at 5542.773 kb on + strand, within Pf1N1B4_4995 at 5542.774 kb on - strand, within Pf1N1B4_4995 at 5542.774 kb on - strand at 5542.831 kb on + strand, within Pf1N1B4_4995 at 5542.832 kb on - strand at 5542.832 kb on - strand, within Pf1N1B4_4995 at 5542.832 kb on - strand, within Pf1N1B4_4995 at 5542.836 kb on - strand at 5542.906 kb on - strand, within Pf1N1B4_4995 at 5543.089 kb on - strand, within Pf1N1B4_4995 at 5543.235 kb on + strand at 5543.235 kb on + strand at 5543.245 kb on - strand at 5543.289 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 5,540,198 - Pf1N1B4_4993 0.43 -0.6 5,540,343 + Pf1N1B4_4993 0.56 +0.1 5,540,950 + -0.0 5,541,208 - Pf1N1B4_4994 0.14 +1.4 5,541,208 - Pf1N1B4_4994 0.14 +0.4 5,541,208 - Pf1N1B4_4994 0.14 -2.2 5,541,283 - Pf1N1B4_4994 0.20 +0.2 5,541,288 + Pf1N1B4_4994 0.20 -1.9 5,541,289 - Pf1N1B4_4994 0.20 +1.7 5,541,593 + Pf1N1B4_4994 0.43 +2.2 5,541,596 + Pf1N1B4_4994 0.43 -2.6 5,541,596 + Pf1N1B4_4994 0.43 +0.4 5,541,597 - Pf1N1B4_4994 0.43 +1.4 5,541,612 - Pf1N1B4_4994 0.45 +0.0 5,541,729 + Pf1N1B4_4994 0.53 +1.6 5,541,811 - -0.6 5,541,818 + Pf1N1B4_4994 0.60 -0.2 5,541,818 + Pf1N1B4_4994 0.60 -0.9 5,541,818 + Pf1N1B4_4994 0.60 +0.0 5,541,818 + Pf1N1B4_4994 0.60 -0.6 5,541,818 + Pf1N1B4_4994 0.60 -1.0 5,541,818 + Pf1N1B4_4994 0.60 -0.6 5,541,818 + Pf1N1B4_4994 0.60 -2.2 5,541,818 + Pf1N1B4_4994 0.60 +0.7 5,541,818 + Pf1N1B4_4994 0.60 +0.4 5,541,819 - Pf1N1B4_4994 0.60 -2.2 5,541,819 - Pf1N1B4_4994 0.60 -1.3 5,541,819 - Pf1N1B4_4994 0.60 +2.2 5,541,819 - Pf1N1B4_4994 0.60 +1.6 5,541,819 - -0.6 5,541,819 - -0.6 5,542,107 + Pf1N1B4_4994 0.82 -0.2 5,542,107 + +0.7 5,542,108 - Pf1N1B4_4994 0.82 -0.6 5,542,108 - Pf1N1B4_4994 0.82 +1.4 5,542,143 + Pf1N1B4_4994 0.84 +1.4 5,542,144 - Pf1N1B4_4994 0.85 +0.2 5,542,144 - +1.4 5,542,170 + Pf1N1B4_4994 0.86 -2.2 5,542,170 + Pf1N1B4_4994 0.86 +0.7 5,542,171 - Pf1N1B4_4994 0.87 +0.8 5,542,171 - Pf1N1B4_4994 0.87 +0.9 5,542,190 - Pf1N1B4_4994 0.88 +0.0 5,542,219 - +0.4 5,542,219 - +0.6 5,542,291 - +0.4 5,542,353 + +0.7 5,542,406 - +1.4 5,542,406 - +1.0 5,542,502 + Pf1N1B4_4995 0.13 -1.2 5,542,503 - +1.0 5,542,576 - Pf1N1B4_4995 0.21 +1.0 5,542,773 + Pf1N1B4_4995 0.43 +1.0 5,542,774 - Pf1N1B4_4995 0.43 -0.3 5,542,774 - -0.6 5,542,831 + Pf1N1B4_4995 0.49 +0.6 5,542,832 - +0.4 5,542,832 - Pf1N1B4_4995 0.49 -0.1 5,542,832 - Pf1N1B4_4995 0.49 +1.7 5,542,836 - +0.4 5,542,906 - Pf1N1B4_4995 0.57 +0.2 5,543,089 - Pf1N1B4_4995 0.77 -1.3 5,543,235 + +0.0 5,543,235 + +0.4 5,543,245 - +1.4 5,543,289 + +0.2
Or see this region's nucleotide sequence