Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_418 and Pf1N1B4_419 are separated by 139 nucleotides Pf1N1B4_419 and Pf1N1B4_420 are separated by 394 nucleotides
Pf1N1B4_418 - Molybdenum cofactor biosynthesis protein MoaA, at 486,928 to 487,896
_418
Pf1N1B4_419 - Transcriptional regulator, TetR family, at 488,036 to 488,674
_419
Pf1N1B4_420 - Putative deoxyribonuclease YcfH, at 489,069 to 489,860
_420
Position (kb) 488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 487.045 kb on - strand, within Pf1N1B4_418 at 487.064 kb on + strand, within Pf1N1B4_418 at 487.064 kb on + strand, within Pf1N1B4_418 at 487.064 kb on + strand, within Pf1N1B4_418 at 487.064 kb on + strand, within Pf1N1B4_418 at 487.065 kb on - strand, within Pf1N1B4_418 at 487.065 kb on - strand, within Pf1N1B4_418 at 487.065 kb on - strand, within Pf1N1B4_418 at 487.065 kb on - strand, within Pf1N1B4_418 at 487.065 kb on - strand, within Pf1N1B4_418 at 487.065 kb on - strand, within Pf1N1B4_418 at 487.108 kb on - strand, within Pf1N1B4_418 at 487.120 kb on + strand, within Pf1N1B4_418 at 487.238 kb on + strand, within Pf1N1B4_418 at 487.239 kb on - strand, within Pf1N1B4_418 at 487.239 kb on - strand, within Pf1N1B4_418 at 487.351 kb on + strand, within Pf1N1B4_418 at 487.351 kb on + strand, within Pf1N1B4_418 at 487.352 kb on - strand, within Pf1N1B4_418 at 487.394 kb on - strand, within Pf1N1B4_418 at 487.732 kb on + strand, within Pf1N1B4_418 at 487.732 kb on + strand, within Pf1N1B4_418 at 487.739 kb on + strand, within Pf1N1B4_418 at 487.739 kb on + strand, within Pf1N1B4_418 at 487.740 kb on - strand, within Pf1N1B4_418 at 487.817 kb on + strand at 487.817 kb on + strand at 487.817 kb on + strand at 487.817 kb on + strand at 487.818 kb on - strand at 487.818 kb on - strand at 487.818 kb on - strand at 487.821 kb on + strand at 487.821 kb on + strand at 487.821 kb on + strand at 487.821 kb on + strand at 487.822 kb on - strand at 487.822 kb on - strand at 487.822 kb on - strand at 487.822 kb on - strand at 487.822 kb on - strand at 487.829 kb on + strand at 487.829 kb on + strand at 487.829 kb on + strand at 487.830 kb on - strand at 487.830 kb on - strand at 487.830 kb on - strand at 487.830 kb on - strand at 487.830 kb on - strand at 487.830 kb on - strand at 487.830 kb on - strand at 487.955 kb on + strand at 487.965 kb on + strand at 487.975 kb on + strand at 487.975 kb on + strand at 487.975 kb on + strand at 487.976 kb on - strand at 487.978 kb on - strand at 487.978 kb on - strand at 487.978 kb on - strand at 487.989 kb on - strand at 488.001 kb on - strand at 488.001 kb on - strand at 488.004 kb on + strand at 488.004 kb on + strand at 488.004 kb on + strand at 488.005 kb on - strand at 488.005 kb on - strand at 488.005 kb on - strand at 488.005 kb on - strand at 488.157 kb on + strand, within Pf1N1B4_419 at 488.158 kb on - strand, within Pf1N1B4_419 at 488.208 kb on + strand, within Pf1N1B4_419 at 488.209 kb on - strand, within Pf1N1B4_419 at 488.209 kb on - strand at 488.493 kb on + strand, within Pf1N1B4_419 at 488.494 kb on - strand, within Pf1N1B4_419 at 488.494 kb on - strand, within Pf1N1B4_419 at 488.494 kb on - strand, within Pf1N1B4_419 at 488.669 kb on - strand at 488.674 kb on + strand at 488.674 kb on + strand at 488.712 kb on + strand at 488.712 kb on + strand at 488.713 kb on - strand at 488.713 kb on - strand at 488.755 kb on + strand at 488.755 kb on + strand at 488.755 kb on + strand at 488.756 kb on - strand at 488.756 kb on - strand at 488.756 kb on - strand at 488.756 kb on - strand at 488.836 kb on - strand at 488.851 kb on + strand at 488.851 kb on + strand at 488.870 kb on + strand at 488.880 kb on + strand at 488.880 kb on + strand at 488.880 kb on + strand at 488.930 kb on + strand at 488.956 kb on + strand at 488.957 kb on - strand at 488.962 kb on + strand at 488.962 kb on + strand at 488.962 kb on + strand at 489.071 kb on - strand at 489.146 kb on - strand at 489.189 kb on + strand, within Pf1N1B4_420 at 489.190 kb on - strand, within Pf1N1B4_420 at 489.190 kb on - strand, within Pf1N1B4_420 at 489.190 kb on - strand, within Pf1N1B4_420 at 489.190 kb on - strand, within Pf1N1B4_420 at 489.190 kb on - strand, within Pf1N1B4_420 at 489.193 kb on + strand, within Pf1N1B4_420 at 489.194 kb on - strand, within Pf1N1B4_420 at 489.194 kb on - strand, within Pf1N1B4_420 at 489.194 kb on - strand, within Pf1N1B4_420 at 489.194 kb on - strand, within Pf1N1B4_420 at 489.277 kb on - strand, within Pf1N1B4_420 at 489.277 kb on - strand, within Pf1N1B4_420 at 489.343 kb on + strand, within Pf1N1B4_420 at 489.343 kb on + strand, within Pf1N1B4_420 at 489.344 kb on - strand, within Pf1N1B4_420 at 489.344 kb on - strand, within Pf1N1B4_420 at 489.344 kb on - strand, within Pf1N1B4_420 at 489.344 kb on - strand, within Pf1N1B4_420 at 489.344 kb on - strand, within Pf1N1B4_420 at 489.344 kb on - strand, within Pf1N1B4_420 at 489.346 kb on + strand, within Pf1N1B4_420 at 489.347 kb on - strand, within Pf1N1B4_420 at 489.468 kb on - strand at 489.468 kb on - strand, within Pf1N1B4_420 at 489.556 kb on + strand, within Pf1N1B4_420 at 489.556 kb on + strand, within Pf1N1B4_420 at 489.562 kb on + strand, within Pf1N1B4_420 at 489.563 kb on - strand, within Pf1N1B4_420 at 489.563 kb on - strand, within Pf1N1B4_420 at 489.589 kb on - strand, within Pf1N1B4_420
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 487,045 - Pf1N1B4_418 0.12 +0.2 487,064 + Pf1N1B4_418 0.14 +2.2 487,064 + Pf1N1B4_418 0.14 -0.1 487,064 + Pf1N1B4_418 0.14 -0.7 487,064 + Pf1N1B4_418 0.14 +2.2 487,065 - Pf1N1B4_418 0.14 +0.3 487,065 - Pf1N1B4_418 0.14 +0.9 487,065 - Pf1N1B4_418 0.14 +2.2 487,065 - Pf1N1B4_418 0.14 -0.1 487,065 - Pf1N1B4_418 0.14 -0.1 487,065 - Pf1N1B4_418 0.14 +1.5 487,108 - Pf1N1B4_418 0.19 -0.7 487,120 + Pf1N1B4_418 0.20 +0.4 487,238 + Pf1N1B4_418 0.32 +0.2 487,239 - Pf1N1B4_418 0.32 +0.7 487,239 - Pf1N1B4_418 0.32 +0.9 487,351 + Pf1N1B4_418 0.44 +1.7 487,351 + Pf1N1B4_418 0.44 +0.3 487,352 - Pf1N1B4_418 0.44 +1.2 487,394 - Pf1N1B4_418 0.48 -1.1 487,732 + Pf1N1B4_418 0.83 -0.1 487,732 + Pf1N1B4_418 0.83 +1.1 487,739 + Pf1N1B4_418 0.84 -1.7 487,739 + Pf1N1B4_418 0.84 -0.1 487,740 - Pf1N1B4_418 0.84 +0.7 487,817 + -0.2 487,817 + -0.3 487,817 + +0.9 487,817 + -0.8 487,818 - +1.2 487,818 - +2.5 487,818 - -0.7 487,821 + -1.1 487,821 + -0.5 487,821 + -2.7 487,821 + -2.1 487,822 - -1.2 487,822 - +0.5 487,822 - -0.6 487,822 - +0.5 487,822 - +0.5 487,829 + -1.9 487,829 + -0.1 487,829 + +0.9 487,830 - +0.9 487,830 - -0.4 487,830 - +0.9 487,830 - -0.1 487,830 - +1.2 487,830 - +0.5 487,830 - +0.7 487,955 + +0.5 487,965 + +1.3 487,975 + -1.9 487,975 + -2.4 487,975 + -0.1 487,976 - +0.9 487,978 - +1.2 487,978 - -0.7 487,978 - +1.2 487,989 - +0.1 488,001 - -0.1 488,001 - +0.5 488,004 + +0.9 488,004 + +0.5 488,004 + -0.1 488,005 - -1.7 488,005 - -0.7 488,005 - -0.7 488,005 - +0.3 488,157 + Pf1N1B4_419 0.19 -1.7 488,158 - Pf1N1B4_419 0.19 -0.1 488,208 + Pf1N1B4_419 0.27 -1.1 488,209 - Pf1N1B4_419 0.27 -2.4 488,209 - -1.1 488,493 + Pf1N1B4_419 0.72 -0.1 488,494 - Pf1N1B4_419 0.72 +1.2 488,494 - Pf1N1B4_419 0.72 -1.7 488,494 - Pf1N1B4_419 0.72 +0.9 488,669 - +0.9 488,674 + -1.1 488,674 + +0.9 488,712 + -0.8 488,712 + -0.7 488,713 - -1.7 488,713 - +1.2 488,755 + -2.9 488,755 + +0.5 488,755 + +0.9 488,756 - -0.3 488,756 - +0.3 488,756 - +0.1 488,756 - -0.1 488,836 - +0.3 488,851 + +0.9 488,851 + -0.1 488,870 + -0.5 488,880 + -0.6 488,880 + -1.7 488,880 + +1.2 488,930 + -0.4 488,956 + -1.1 488,957 - -0.7 488,962 + -0.5 488,962 + -0.7 488,962 + -1.7 489,071 - -1.7 489,146 - +0.4 489,189 + Pf1N1B4_420 0.15 -0.1 489,190 - Pf1N1B4_420 0.15 -0.1 489,190 - Pf1N1B4_420 0.15 -2.1 489,190 - Pf1N1B4_420 0.15 +2.5 489,190 - Pf1N1B4_420 0.15 -0.5 489,190 - Pf1N1B4_420 0.15 -0.6 489,193 + Pf1N1B4_420 0.16 +1.9 489,194 - Pf1N1B4_420 0.16 -0.7 489,194 - Pf1N1B4_420 0.16 +0.9 489,194 - Pf1N1B4_420 0.16 -0.6 489,194 - Pf1N1B4_420 0.16 +0.3 489,277 - Pf1N1B4_420 0.26 +1.5 489,277 - Pf1N1B4_420 0.26 -0.4 489,343 + Pf1N1B4_420 0.35 +1.8 489,343 + Pf1N1B4_420 0.35 +2.5 489,344 - Pf1N1B4_420 0.35 +0.7 489,344 - Pf1N1B4_420 0.35 -1.3 489,344 - Pf1N1B4_420 0.35 +0.5 489,344 - Pf1N1B4_420 0.35 -1.5 489,344 - Pf1N1B4_420 0.35 +0.7 489,344 - Pf1N1B4_420 0.35 -0.1 489,346 + Pf1N1B4_420 0.35 +0.9 489,347 - Pf1N1B4_420 0.35 -2.4 489,468 - +0.5 489,468 - Pf1N1B4_420 0.50 -0.0 489,556 + Pf1N1B4_420 0.61 -0.1 489,556 + Pf1N1B4_420 0.61 +0.5 489,562 + Pf1N1B4_420 0.62 +0.5 489,563 - Pf1N1B4_420 0.62 +0.5 489,563 - Pf1N1B4_420 0.62 -0.4 489,589 - Pf1N1B4_420 0.66 -1.7
Or see this region's nucleotide sequence