Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4081 and Pf1N1B4_4082 overlap by 7 nucleotides Pf1N1B4_4082 and Pf1N1B4_4083 are separated by 133 nucleotides Pf1N1B4_4083 and Pf1N1B4_4084 are separated by 96 nucleotides Pf1N1B4_4084 and Pf1N1B4_4085 are separated by 168 nucleotides
Pf1N1B4_4081 - Gamma-glutamyltranspeptidase (EC 2.3.2.2), at 4,530,360 to 4,532,087
_4081
Pf1N1B4_4082 - hypothetical protein, at 4,532,081 to 4,532,221
_4082
Pf1N1B4_4083 - Isochorismatase (EC 3.3.2.1), at 4,532,355 to 4,532,888
_4083
Pf1N1B4_4084 - hypothetical protein, at 4,532,985 to 4,533,275
_4084
Pf1N1B4_4085 - probable exported protein YPO0702, at 4,533,444 to 4,534,475
_4085
Position (kb) 4532
4533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4531.484 kb on + strand, within Pf1N1B4_4081 at 4531.484 kb on + strand, within Pf1N1B4_4081 at 4531.485 kb on - strand, within Pf1N1B4_4081 at 4531.536 kb on + strand, within Pf1N1B4_4081 at 4531.536 kb on + strand, within Pf1N1B4_4081 at 4531.537 kb on - strand, within Pf1N1B4_4081 at 4531.537 kb on - strand, within Pf1N1B4_4081 at 4531.537 kb on - strand, within Pf1N1B4_4081 at 4531.537 kb on - strand, within Pf1N1B4_4081 at 4531.644 kb on + strand, within Pf1N1B4_4081 at 4531.644 kb on + strand, within Pf1N1B4_4081 at 4531.644 kb on + strand, within Pf1N1B4_4081 at 4531.645 kb on - strand, within Pf1N1B4_4081 at 4531.645 kb on - strand, within Pf1N1B4_4081 at 4531.645 kb on - strand, within Pf1N1B4_4081 at 4531.645 kb on - strand, within Pf1N1B4_4081 at 4531.645 kb on - strand at 4531.645 kb on - strand, within Pf1N1B4_4081 at 4531.645 kb on - strand, within Pf1N1B4_4081 at 4531.982 kb on + strand at 4531.982 kb on + strand at 4531.983 kb on - strand at 4531.991 kb on - strand at 4532.060 kb on + strand at 4532.060 kb on + strand at 4532.060 kb on + strand at 4532.061 kb on - strand at 4532.138 kb on - strand, within Pf1N1B4_4082 at 4532.212 kb on - strand at 4532.279 kb on - strand at 4532.296 kb on - strand at 4532.339 kb on - strand at 4532.529 kb on + strand, within Pf1N1B4_4083 at 4532.529 kb on + strand, within Pf1N1B4_4083 at 4532.530 kb on - strand, within Pf1N1B4_4083 at 4532.616 kb on + strand, within Pf1N1B4_4083 at 4532.616 kb on + strand, within Pf1N1B4_4083 at 4532.616 kb on + strand, within Pf1N1B4_4083 at 4532.691 kb on + strand, within Pf1N1B4_4083 at 4532.692 kb on - strand, within Pf1N1B4_4083 at 4532.947 kb on + strand at 4532.948 kb on - strand at 4533.080 kb on - strand, within Pf1N1B4_4084 at 4533.239 kb on - strand, within Pf1N1B4_4084 at 4533.381 kb on - strand at 4533.413 kb on + strand at 4533.413 kb on + strand at 4533.414 kb on - strand at 4533.414 kb on - strand at 4533.467 kb on + strand at 4533.468 kb on - strand at 4533.527 kb on + strand at 4533.661 kb on + strand, within Pf1N1B4_4085 at 4533.662 kb on - strand, within Pf1N1B4_4085 at 4533.662 kb on - strand, within Pf1N1B4_4085 at 4533.771 kb on - strand, within Pf1N1B4_4085 at 4533.866 kb on - strand, within Pf1N1B4_4085
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 4,531,484 + Pf1N1B4_4081 0.65 -1.6 4,531,484 + Pf1N1B4_4081 0.65 -1.9 4,531,485 - Pf1N1B4_4081 0.65 +0.7 4,531,536 + Pf1N1B4_4081 0.68 -1.9 4,531,536 + Pf1N1B4_4081 0.68 -0.4 4,531,537 - Pf1N1B4_4081 0.68 +1.9 4,531,537 - Pf1N1B4_4081 0.68 -1.9 4,531,537 - Pf1N1B4_4081 0.68 -0.1 4,531,537 - Pf1N1B4_4081 0.68 +0.0 4,531,644 + Pf1N1B4_4081 0.74 -0.3 4,531,644 + Pf1N1B4_4081 0.74 +1.3 4,531,644 + Pf1N1B4_4081 0.74 -0.3 4,531,645 - Pf1N1B4_4081 0.74 -0.3 4,531,645 - Pf1N1B4_4081 0.74 -0.7 4,531,645 - Pf1N1B4_4081 0.74 +0.1 4,531,645 - Pf1N1B4_4081 0.74 +0.7 4,531,645 - +2.0 4,531,645 - Pf1N1B4_4081 0.74 +2.0 4,531,645 - Pf1N1B4_4081 0.74 -0.1 4,531,982 + -0.6 4,531,982 + +0.1 4,531,983 - +0.7 4,531,991 - +0.3 4,532,060 + -1.9 4,532,060 + +0.7 4,532,060 + +0.7 4,532,061 - -0.3 4,532,138 - Pf1N1B4_4082 0.40 +0.3 4,532,212 - +0.5 4,532,279 - +1.1 4,532,296 - +0.0 4,532,339 - +0.4 4,532,529 + Pf1N1B4_4083 0.33 -2.0 4,532,529 + Pf1N1B4_4083 0.33 +1.3 4,532,530 - Pf1N1B4_4083 0.33 +0.7 4,532,616 + Pf1N1B4_4083 0.49 -0.3 4,532,616 + Pf1N1B4_4083 0.49 +0.3 4,532,616 + Pf1N1B4_4083 0.49 +0.1 4,532,691 + Pf1N1B4_4083 0.63 -0.3 4,532,692 - Pf1N1B4_4083 0.63 -0.6 4,532,947 + +1.5 4,532,948 - -1.9 4,533,080 - Pf1N1B4_4084 0.33 +1.1 4,533,239 - Pf1N1B4_4084 0.87 -0.7 4,533,381 - -0.3 4,533,413 + +0.7 4,533,413 + +0.7 4,533,414 - +1.7 4,533,414 - -0.3 4,533,467 + -0.1 4,533,468 - +0.7 4,533,527 + +0.9 4,533,661 + Pf1N1B4_4085 0.21 -0.6 4,533,662 - Pf1N1B4_4085 0.21 -0.3 4,533,662 - Pf1N1B4_4085 0.21 -0.9 4,533,771 - Pf1N1B4_4085 0.32 -0.3 4,533,866 - Pf1N1B4_4085 0.41 -0.3
Or see this region's nucleotide sequence