Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3712

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3711 and Pf1N1B4_3712 are separated by 146 nucleotidesPf1N1B4_3712 and Pf1N1B4_3713 overlap by 4 nucleotides Pf1N1B4_3711 - Cobyric acid synthase (EC 6.3.5.10), at 4,119,580 to 4,121,073 _3711 Pf1N1B4_3712 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 4,121,220 to 4,121,753 _3712 Pf1N1B4_3713 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 4,121,750 to 4,122,805 _3713 Position (kb) 4121 4122Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4120.294 kb on + strand, within Pf1N1B4_3711at 4120.294 kb on + strandat 4120.294 kb on + strand, within Pf1N1B4_3711at 4120.295 kb on - strand, within Pf1N1B4_3711at 4120.365 kb on - strand, within Pf1N1B4_3711at 4120.365 kb on - strand, within Pf1N1B4_3711at 4120.365 kb on - strand, within Pf1N1B4_3711at 4120.534 kb on + strand, within Pf1N1B4_3711at 4120.535 kb on - strand, within Pf1N1B4_3711at 4120.894 kb on + strand, within Pf1N1B4_3711at 4120.894 kb on + strand, within Pf1N1B4_3711at 4120.894 kb on + strand, within Pf1N1B4_3711at 4120.894 kb on + strand, within Pf1N1B4_3711at 4120.894 kb on + strand, within Pf1N1B4_3711at 4120.894 kb on + strand, within Pf1N1B4_3711at 4120.895 kb on - strand, within Pf1N1B4_3711at 4121.307 kb on + strand, within Pf1N1B4_3712at 4121.307 kb on + strand, within Pf1N1B4_3712at 4121.307 kb on + strand, within Pf1N1B4_3712at 4121.307 kb on + strand, within Pf1N1B4_3712at 4121.307 kb on + strand, within Pf1N1B4_3712at 4121.307 kb on + strandat 4121.307 kb on + strand, within Pf1N1B4_3712at 4121.307 kb on + strand, within Pf1N1B4_3712at 4121.307 kb on + strand, within Pf1N1B4_3712at 4121.307 kb on + strand, within Pf1N1B4_3712at 4121.307 kb on + strand, within Pf1N1B4_3712at 4121.307 kb on + strand, within Pf1N1B4_3712at 4121.308 kb on - strandat 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.308 kb on - strand, within Pf1N1B4_3712at 4121.309 kb on + strand, within Pf1N1B4_3712at 4121.309 kb on + strand, within Pf1N1B4_3712at 4121.309 kb on + strand, within Pf1N1B4_3712at 4121.309 kb on + strand, within Pf1N1B4_3712at 4121.309 kb on + strand, within Pf1N1B4_3712at 4121.309 kb on + strand, within Pf1N1B4_3712at 4121.310 kb on - strandat 4121.310 kb on - strand, within Pf1N1B4_3712at 4121.310 kb on - strand, within Pf1N1B4_3712at 4121.310 kb on - strand, within Pf1N1B4_3712at 4121.310 kb on - strand, within Pf1N1B4_3712at 4121.310 kb on - strand, within Pf1N1B4_3712at 4121.310 kb on - strand, within Pf1N1B4_3712at 4121.311 kb on + strand, within Pf1N1B4_3712at 4121.311 kb on + strand, within Pf1N1B4_3712at 4121.311 kb on + strand, within Pf1N1B4_3712at 4121.311 kb on + strandat 4121.311 kb on + strand, within Pf1N1B4_3712at 4121.319 kb on + strand, within Pf1N1B4_3712at 4121.319 kb on + strandat 4121.319 kb on + strand, within Pf1N1B4_3712at 4121.319 kb on + strand, within Pf1N1B4_3712at 4121.319 kb on + strand, within Pf1N1B4_3712at 4121.319 kb on + strandat 4121.320 kb on - strand, within Pf1N1B4_3712at 4121.320 kb on - strand, within Pf1N1B4_3712at 4121.320 kb on - strand, within Pf1N1B4_3712at 4121.320 kb on - strandat 4121.320 kb on - strand, within Pf1N1B4_3712at 4121.320 kb on - strand, within Pf1N1B4_3712at 4121.320 kb on - strandat 4121.646 kb on + strand, within Pf1N1B4_3712at 4121.646 kb on + strand, within Pf1N1B4_3712at 4121.832 kb on + strandat 4121.832 kb on + strandat 4121.832 kb on + strandat 4122.225 kb on + strand, within Pf1N1B4_3713at 4122.225 kb on + strandat 4122.225 kb on + strand, within Pf1N1B4_3713at 4122.226 kb on - strand, within Pf1N1B4_3713at 4122.226 kb on - strand, within Pf1N1B4_3713at 4122.433 kb on + strand, within Pf1N1B4_3713at 4122.544 kb on + strand, within Pf1N1B4_3713at 4122.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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4,120,294 + Pf1N1B4_3711 0.48 -1.2
4,120,294 + +0.8
4,120,294 + Pf1N1B4_3711 0.48 -1.2
4,120,295 - Pf1N1B4_3711 0.48 +0.8
4,120,365 - Pf1N1B4_3711 0.53 -2.2
4,120,365 - Pf1N1B4_3711 0.53 +0.8
4,120,365 - Pf1N1B4_3711 0.53 -2.8
4,120,534 + Pf1N1B4_3711 0.64 -1.3
4,120,535 - Pf1N1B4_3711 0.64 +0.2
4,120,894 + Pf1N1B4_3711 0.88 -1.2
4,120,894 + Pf1N1B4_3711 0.88 -1.2
4,120,894 + Pf1N1B4_3711 0.88 +0.2
4,120,894 + Pf1N1B4_3711 0.88 -1.4
4,120,894 + Pf1N1B4_3711 0.88 +0.8
4,120,894 + Pf1N1B4_3711 0.88 -2.8
4,120,895 - Pf1N1B4_3711 0.88 -0.2
4,121,307 + Pf1N1B4_3712 0.16 -0.2
4,121,307 + Pf1N1B4_3712 0.16 -1.4
4,121,307 + Pf1N1B4_3712 0.16 +1.4
4,121,307 + Pf1N1B4_3712 0.16 -0.2
4,121,307 + Pf1N1B4_3712 0.16 -2.5
4,121,307 + -0.2
4,121,307 + Pf1N1B4_3712 0.16 +0.4
4,121,307 + Pf1N1B4_3712 0.16 -1.8
4,121,307 + Pf1N1B4_3712 0.16 -1.0
4,121,307 + Pf1N1B4_3712 0.16 -0.5
4,121,307 + Pf1N1B4_3712 0.16 -0.5
4,121,307 + Pf1N1B4_3712 0.16 +0.4
4,121,308 - -1.2
4,121,308 - Pf1N1B4_3712 0.16 -1.2
4,121,308 - Pf1N1B4_3712 0.16 +0.8
4,121,308 - Pf1N1B4_3712 0.16 -0.2
4,121,308 - Pf1N1B4_3712 0.16 +0.2
4,121,308 - Pf1N1B4_3712 0.16 -1.2
4,121,308 - Pf1N1B4_3712 0.16 -1.5
4,121,308 - Pf1N1B4_3712 0.16 -1.4
4,121,308 - Pf1N1B4_3712 0.16 -1.0
4,121,308 - Pf1N1B4_3712 0.16 -0.2
4,121,308 - Pf1N1B4_3712 0.16 -1.5
4,121,308 - Pf1N1B4_3712 0.16 -1.2
4,121,308 - Pf1N1B4_3712 0.16 -0.6
4,121,308 - Pf1N1B4_3712 0.16 -2.5
4,121,308 - Pf1N1B4_3712 0.16 +0.8
4,121,308 - Pf1N1B4_3712 0.16 -1.2
4,121,308 - Pf1N1B4_3712 0.16 -2.8
4,121,308 - Pf1N1B4_3712 0.16 +0.8
4,121,309 + Pf1N1B4_3712 0.17 +0.8
4,121,309 + Pf1N1B4_3712 0.17 -1.2
4,121,309 + Pf1N1B4_3712 0.17 -2.2
4,121,309 + Pf1N1B4_3712 0.17 -1.8
4,121,309 + Pf1N1B4_3712 0.17 -1.8
4,121,309 + Pf1N1B4_3712 0.17 -1.8
4,121,310 - +0.8
4,121,310 - Pf1N1B4_3712 0.17 +0.1
4,121,310 - Pf1N1B4_3712 0.17 -0.2
4,121,310 - Pf1N1B4_3712 0.17 +0.3
4,121,310 - Pf1N1B4_3712 0.17 -2.8
4,121,310 - Pf1N1B4_3712 0.17 -1.2
4,121,310 - Pf1N1B4_3712 0.17 +0.2
4,121,311 + Pf1N1B4_3712 0.17 -0.5
4,121,311 + Pf1N1B4_3712 0.17 -0.2
4,121,311 + Pf1N1B4_3712 0.17 -1.2
4,121,311 + -1.8
4,121,311 + Pf1N1B4_3712 0.17 +0.6
4,121,319 + Pf1N1B4_3712 0.19 -2.2
4,121,319 + -1.2
4,121,319 + Pf1N1B4_3712 0.19 -0.5
4,121,319 + Pf1N1B4_3712 0.19 -1.5
4,121,319 + Pf1N1B4_3712 0.19 -0.8
4,121,319 + -2.2
4,121,320 - Pf1N1B4_3712 0.19 -1.8
4,121,320 - Pf1N1B4_3712 0.19 -1.2
4,121,320 - Pf1N1B4_3712 0.19 -0.9
4,121,320 - -1.8
4,121,320 - Pf1N1B4_3712 0.19 +1.8
4,121,320 - Pf1N1B4_3712 0.19 -1.2
4,121,320 - -2.2
4,121,646 + Pf1N1B4_3712 0.80 -1.2
4,121,646 + Pf1N1B4_3712 0.80 -0.2
4,121,832 + +0.8
4,121,832 + -2.8
4,121,832 + -2.8
4,122,225 + Pf1N1B4_3713 0.45 -0.2
4,122,225 + +1.8
4,122,225 + Pf1N1B4_3713 0.45 +0.8
4,122,226 - Pf1N1B4_3713 0.45 -1.8
4,122,226 - Pf1N1B4_3713 0.45 +0.8
4,122,433 + Pf1N1B4_3713 0.65 +0.8
4,122,544 + Pf1N1B4_3713 0.75 -1.2
4,122,545 - +0.8

Or see this region's nucleotide sequence