Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2689

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2688 and Pf1N1B4_2689 are separated by 1 nucleotidesPf1N1B4_2689 and Pf1N1B4_2690 are separated by 72 nucleotidesPf1N1B4_2690 and Pf1N1B4_2691 are separated by 9 nucleotides Pf1N1B4_2688 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 3,025,180 to 3,026,427 _2688 Pf1N1B4_2689 - Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), at 3,026,429 to 3,027,118 _2689 Pf1N1B4_2690 - Iojap protein, at 3,027,191 to 3,027,685 _2690 Pf1N1B4_2691 - LSU m3Psi1915 methyltransferase RlmH, at 3,027,695 to 3,028,162 _2691 Position (kb) 3026 3027 3028Strain fitness (log2 ratio) -2 -1 0 1 2at 3025.531 kb on + strand, within Pf1N1B4_2688at 3025.753 kb on + strand, within Pf1N1B4_2688at 3025.858 kb on + strand, within Pf1N1B4_2688at 3025.858 kb on + strand, within Pf1N1B4_2688at 3025.858 kb on + strand, within Pf1N1B4_2688at 3025.918 kb on + strand, within Pf1N1B4_2688at 3026.043 kb on + strandat 3026.098 kb on + strand, within Pf1N1B4_2688at 3026.157 kb on + strand, within Pf1N1B4_2688at 3026.157 kb on + strand, within Pf1N1B4_2688at 3026.157 kb on + strand, within Pf1N1B4_2688at 3026.160 kb on + strand, within Pf1N1B4_2688at 3026.262 kb on + strand, within Pf1N1B4_2688at 3026.322 kb on + strandat 3026.380 kb on + strandat 3026.380 kb on + strandat 3026.380 kb on + strandat 3026.380 kb on + strandat 3026.380 kb on + strandat 3027.152 kb on + strandat 3027.761 kb on + strand, within Pf1N1B4_2691

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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3,025,531 + Pf1N1B4_2688 0.28 -0.5
3,025,753 + Pf1N1B4_2688 0.46 +1.8
3,025,858 + Pf1N1B4_2688 0.54 +0.5
3,025,858 + Pf1N1B4_2688 0.54 -0.4
3,025,858 + Pf1N1B4_2688 0.54 -0.8
3,025,918 + Pf1N1B4_2688 0.59 -1.4
3,026,043 + +0.2
3,026,098 + Pf1N1B4_2688 0.74 +0.2
3,026,157 + Pf1N1B4_2688 0.78 +1.0
3,026,157 + Pf1N1B4_2688 0.78 +0.8
3,026,157 + Pf1N1B4_2688 0.78 -0.4
3,026,160 + Pf1N1B4_2688 0.79 -1.1
3,026,262 + Pf1N1B4_2688 0.87 -1.8
3,026,322 + -1.8
3,026,380 + +1.8
3,026,380 + +0.2
3,026,380 + +0.6
3,026,380 + +0.2
3,026,380 + +1.2
3,027,152 + +0.2
3,027,761 + Pf1N1B4_2691 0.14 +0.9

Or see this region's nucleotide sequence