Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1058 and Pf1N1B4_1059 are separated by 255 nucleotides Pf1N1B4_1059 and Pf1N1B4_1060 overlap by 50 nucleotides Pf1N1B4_1060 and Pf1N1B4_1061 are separated by 103 nucleotides
Pf1N1B4_1058 - Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4), at 1,194,104 to 1,195,021
_1058
Pf1N1B4_1059 - FIG137478: Hypothetical protein YbgI, at 1,195,277 to 1,195,531
_1059
Pf1N1B4_1060 - FIG137478: Hypothetical protein YbgI, at 1,195,482 to 1,196,036
_1060
Pf1N1B4_1061 - Outer membrane stress sensor protease DegS, at 1,196,140 to 1,197,300
_1061
Position (kb)
1195
1196 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1195.026 kb on - strand at 1195.026 kb on - strand at 1195.043 kb on + strand at 1195.043 kb on + strand at 1195.043 kb on + strand at 1195.043 kb on + strand at 1195.044 kb on - strand at 1195.044 kb on - strand at 1195.044 kb on - strand at 1195.044 kb on - strand at 1195.044 kb on - strand at 1195.044 kb on - strand at 1195.081 kb on + strand at 1195.081 kb on + strand at 1195.081 kb on + strand at 1195.081 kb on + strand at 1195.081 kb on + strand at 1195.081 kb on + strand at 1195.082 kb on - strand at 1195.082 kb on - strand at 1195.099 kb on + strand at 1195.099 kb on + strand at 1195.136 kb on + strand at 1195.137 kb on - strand at 1195.282 kb on + strand at 1195.282 kb on + strand at 1195.283 kb on - strand at 1195.336 kb on - strand, within Pf1N1B4_1059 at 1195.452 kb on + strand, within Pf1N1B4_1059 at 1195.452 kb on + strand, within Pf1N1B4_1059 at 1195.453 kb on - strand, within Pf1N1B4_1059 at 1195.453 kb on - strand, within Pf1N1B4_1059 at 1195.488 kb on + strand at 1195.488 kb on + strand at 1195.488 kb on + strand at 1195.488 kb on + strand at 1195.488 kb on + strand at 1195.706 kb on + strand at 1195.745 kb on - strand, within Pf1N1B4_1060 at 1195.835 kb on - strand, within Pf1N1B4_1060 at 1196.037 kb on - strand at 1196.047 kb on + strand at 1196.047 kb on + strand at 1196.048 kb on - strand at 1196.051 kb on + strand at 1196.051 kb on + strand at 1196.080 kb on + strand at 1196.080 kb on + strand at 1196.080 kb on + strand at 1196.080 kb on + strand at 1196.080 kb on + strand at 1196.080 kb on + strand at 1196.080 kb on + strand at 1196.080 kb on + strand at 1196.081 kb on - strand at 1196.081 kb on - strand at 1196.081 kb on - strand at 1196.081 kb on - strand at 1196.081 kb on - strand at 1196.081 kb on - strand at 1196.082 kb on + strand at 1196.082 kb on + strand at 1196.082 kb on + strand at 1196.082 kb on + strand at 1196.082 kb on + strand at 1196.082 kb on + strand at 1196.082 kb on + strand at 1196.095 kb on + strand at 1196.127 kb on + strand at 1196.347 kb on + strand, within Pf1N1B4_1061
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 1,195,026 - -1.0 1,195,026 - -1.9 1,195,043 + -1.9 1,195,043 + -3.8 1,195,043 + -2.9 1,195,043 + -2.7 1,195,044 - -2.2 1,195,044 - -0.8 1,195,044 - -1.7 1,195,044 - -1.9 1,195,044 - -0.4 1,195,044 - +0.9 1,195,081 + -1.6 1,195,081 + -1.7 1,195,081 + -1.5 1,195,081 + -0.5 1,195,081 + -2.5 1,195,081 + -3.6 1,195,082 - -0.2 1,195,082 - +1.4 1,195,099 + -0.1 1,195,099 + +1.1 1,195,136 + -1.7 1,195,137 - -1.2 1,195,282 + -1.9 1,195,282 + +0.5 1,195,283 - +0.1 1,195,336 - Pf1N1B4_1059 0.23 +0.8 1,195,452 + Pf1N1B4_1059 0.69 -0.9 1,195,452 + Pf1N1B4_1059 0.69 -1.1 1,195,453 - Pf1N1B4_1059 0.69 -0.9 1,195,453 - Pf1N1B4_1059 0.69 -0.3 1,195,488 + +1.2 1,195,488 + -0.0 1,195,488 + +2.1 1,195,488 + -0.5 1,195,488 + +1.7 1,195,706 + +1.1 1,195,745 - Pf1N1B4_1060 0.47 -2.2 1,195,835 - Pf1N1B4_1060 0.64 -0.6 1,196,037 - -1.0 1,196,047 + +2.7 1,196,047 + -1.5 1,196,048 - -0.5 1,196,051 + -0.6 1,196,051 + +1.1 1,196,080 + +0.8 1,196,080 + +2.7 1,196,080 + +1.1 1,196,080 + -0.9 1,196,080 + +0.8 1,196,080 + -0.2 1,196,080 + -1.5 1,196,080 + +0.3 1,196,081 - -0.9 1,196,081 - +1.1 1,196,081 - -0.2 1,196,081 - -0.6 1,196,081 - +0.1 1,196,081 - +0.5 1,196,082 + -1.7 1,196,082 + +0.3 1,196,082 + -0.5 1,196,082 + +1.1 1,196,082 + +0.3 1,196,082 + -0.9 1,196,082 + +0.1 1,196,095 + -0.5 1,196,127 + +0.1 1,196,347 + Pf1N1B4_1061 0.18 -1.5
Or see this region's nucleotide sequence