Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06345

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06344 and H281DRAFT_06345 are separated by 135 nucleotidesH281DRAFT_06345 and H281DRAFT_06346 are separated by 32 nucleotides H281DRAFT_06344: H281DRAFT_06344 - transcriptional regulator, LysR family, at 18,362 to 19,285 _06344 H281DRAFT_06345: H281DRAFT_06345 - tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase, at 19,421 to 20,503 _06345 H281DRAFT_06346: H281DRAFT_06346 - Predicted deacylase, at 20,536 to 21,525 _06346 Position (kb) 19 20 21Strain fitness (log2 ratio) -1 0 1 2at 18.776 kb on + strand, within H281DRAFT_06344at 18.776 kb on + strand, within H281DRAFT_06344at 18.839 kb on - strand, within H281DRAFT_06344at 18.986 kb on - strandat 18.986 kb on - strand, within H281DRAFT_06344at 19.072 kb on + strand, within H281DRAFT_06344at 19.176 kb on + strand, within H281DRAFT_06344at 19.176 kb on + strand, within H281DRAFT_06344at 19.177 kb on - strand, within H281DRAFT_06344at 19.372 kb on + strandat 19.373 kb on - strandat 19.373 kb on - strandat 19.396 kb on - strandat 19.568 kb on + strand, within H281DRAFT_06345at 19.727 kb on + strand, within H281DRAFT_06345at 19.888 kb on - strand, within H281DRAFT_06345at 20.614 kb on + strandat 20.614 kb on + strandat 20.615 kb on - strandat 20.615 kb on - strandat 20.891 kb on + strand, within H281DRAFT_06346at 21.334 kb on + strand, within H281DRAFT_06346at 21.334 kb on + strand, within H281DRAFT_06346

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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18,776 + H281DRAFT_06344 0.45 +0.4
18,776 + H281DRAFT_06344 0.45 +1.7
18,839 - H281DRAFT_06344 0.52 +0.2
18,986 - +1.8
18,986 - H281DRAFT_06344 0.68 -0.6
19,072 + H281DRAFT_06344 0.77 -0.1
19,176 + H281DRAFT_06344 0.88 -1.0
19,176 + H281DRAFT_06344 0.88 -0.0
19,177 - H281DRAFT_06344 0.88 -0.3
19,372 + -0.4
19,373 - -0.5
19,373 - +0.6
19,396 - +0.5
19,568 + H281DRAFT_06345 0.14 -1.0
19,727 + H281DRAFT_06345 0.28 +0.2
19,888 - H281DRAFT_06345 0.43 +0.7
20,614 + -0.3
20,614 + -0.6
20,615 - -0.6
20,615 - +0.4
20,891 + H281DRAFT_06346 0.36 +0.8
21,334 + H281DRAFT_06346 0.81 -1.4
21,334 + H281DRAFT_06346 0.81 +0.5

Or see this region's nucleotide sequence