Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06311

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06309 and H281DRAFT_06310 are separated by 16 nucleotidesH281DRAFT_06310 and H281DRAFT_06311 are separated by 207 nucleotidesH281DRAFT_06311 and H281DRAFT_06312 are separated by 19 nucleotidesH281DRAFT_06312 and H281DRAFT_06313 are separated by 77 nucleotides H281DRAFT_06309: H281DRAFT_06309 - ribonuclease T1, at 93,580 to 93,996 _06309 H281DRAFT_06310: H281DRAFT_06310 - Barstar (barnase inhibitor), at 94,013 to 94,573 _06310 H281DRAFT_06311: H281DRAFT_06311 - 16S rRNA (uracil1498-N3)-methyltransferase, at 94,781 to 95,521 _06311 H281DRAFT_06312: H281DRAFT_06312 - Uncharacterized conserved protein PhnB, glyoxalase superfamily, at 95,541 to 95,987 _06312 H281DRAFT_06313: H281DRAFT_06313 - spermidine synthase (EC 2.5.1.16), at 96,065 to 96,934 _06313 Position (kb) 94 95 96Strain fitness (log2 ratio) -2 -1 0 1 2 3at 93.784 kb on + strandat 93.865 kb on + strand, within H281DRAFT_06309at 93.865 kb on + strand, within H281DRAFT_06309at 93.865 kb on + strand, within H281DRAFT_06309at 93.865 kb on + strand, within H281DRAFT_06309at 93.866 kb on - strand, within H281DRAFT_06309at 93.866 kb on - strand, within H281DRAFT_06309at 93.892 kb on - strand, within H281DRAFT_06309at 93.949 kb on + strand, within H281DRAFT_06309at 93.953 kb on - strand, within H281DRAFT_06309at 93.967 kb on + strandat 93.968 kb on - strandat 93.968 kb on - strandat 93.968 kb on - strandat 93.979 kb on - strandat 93.984 kb on + strandat 93.984 kb on + strandat 93.984 kb on + strandat 94.028 kb on + strandat 94.028 kb on + strandat 94.210 kb on - strand, within H281DRAFT_06310at 94.210 kb on - strand, within H281DRAFT_06310at 94.210 kb on - strand, within H281DRAFT_06310at 94.281 kb on - strand, within H281DRAFT_06310at 94.286 kb on + strand, within H281DRAFT_06310at 94.287 kb on - strand, within H281DRAFT_06310at 94.333 kb on + strand, within H281DRAFT_06310at 94.333 kb on + strand, within H281DRAFT_06310at 94.334 kb on - strand, within H281DRAFT_06310at 94.371 kb on - strand, within H281DRAFT_06310at 94.371 kb on - strand, within H281DRAFT_06310at 94.371 kb on - strandat 94.408 kb on + strand, within H281DRAFT_06310at 94.559 kb on + strandat 94.743 kb on - strandat 95.273 kb on + strand, within H281DRAFT_06311at 95.273 kb on + strandat 95.274 kb on - strand, within H281DRAFT_06311at 95.274 kb on - strand, within H281DRAFT_06311at 95.274 kb on - strand, within H281DRAFT_06311at 95.274 kb on - strand, within H281DRAFT_06311at 95.274 kb on - strand, within H281DRAFT_06311at 95.382 kb on + strand, within H281DRAFT_06311at 95.382 kb on + strand, within H281DRAFT_06311at 95.383 kb on - strand, within H281DRAFT_06311at 95.383 kb on - strand, within H281DRAFT_06311at 95.383 kb on - strand, within H281DRAFT_06311at 95.411 kb on + strand, within H281DRAFT_06311at 95.412 kb on - strand, within H281DRAFT_06311at 95.530 kb on + strandat 95.531 kb on - strandat 95.537 kb on + strandat 95.538 kb on - strandat 95.538 kb on - strandat 95.692 kb on + strand, within H281DRAFT_06312at 95.692 kb on + strand, within H281DRAFT_06312at 95.692 kb on + strand, within H281DRAFT_06312at 95.693 kb on - strand, within H281DRAFT_06312at 95.693 kb on - strand, within H281DRAFT_06312at 95.693 kb on - strand, within H281DRAFT_06312at 95.693 kb on - strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.699 kb on - strand, within H281DRAFT_06312at 95.699 kb on - strand, within H281DRAFT_06312at 95.699 kb on - strand, within H281DRAFT_06312at 95.699 kb on - strand, within H281DRAFT_06312at 95.797 kb on + strand, within H281DRAFT_06312at 95.797 kb on + strand, within H281DRAFT_06312at 95.798 kb on - strand, within H281DRAFT_06312at 95.798 kb on - strand, within H281DRAFT_06312at 95.798 kb on - strand, within H281DRAFT_06312at 95.798 kb on - strand, within H281DRAFT_06312at 95.840 kb on + strand, within H281DRAFT_06312at 95.872 kb on + strand, within H281DRAFT_06312at 95.873 kb on - strand, within H281DRAFT_06312at 95.970 kb on + strandat 96.027 kb on + strandat 96.092 kb on + strandat 96.092 kb on + strandat 96.093 kb on - strandat 96.097 kb on + strandat 96.150 kb on + strandat 96.150 kb on + strandat 96.150 kb on + strandat 96.151 kb on - strandat 96.264 kb on + strand, within H281DRAFT_06313at 96.264 kb on + strand, within H281DRAFT_06313at 96.265 kb on - strand, within H281DRAFT_06313at 96.267 kb on - strand, within H281DRAFT_06313at 96.267 kb on - strand, within H281DRAFT_06313at 96.354 kb on + strand, within H281DRAFT_06313at 96.355 kb on - strand, within H281DRAFT_06313at 96.417 kb on + strand, within H281DRAFT_06313at 96.417 kb on + strand, within H281DRAFT_06313at 96.418 kb on - strand, within H281DRAFT_06313at 96.418 kb on - strand, within H281DRAFT_06313at 96.418 kb on - strand, within H281DRAFT_06313at 96.433 kb on - strand, within H281DRAFT_06313at 96.473 kb on + strand, within H281DRAFT_06313at 96.473 kb on + strand, within H281DRAFT_06313at 96.473 kb on + strand, within H281DRAFT_06313at 96.486 kb on + strand, within H281DRAFT_06313at 96.487 kb on - strand, within H281DRAFT_06313at 96.487 kb on - strand, within H281DRAFT_06313

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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93,784 + +1.0
93,865 + H281DRAFT_06309 0.68 -1.2
93,865 + H281DRAFT_06309 0.68 -0.4
93,865 + H281DRAFT_06309 0.68 -0.3
93,865 + H281DRAFT_06309 0.68 +0.6
93,866 - H281DRAFT_06309 0.69 -0.0
93,866 - H281DRAFT_06309 0.69 +0.4
93,892 - H281DRAFT_06309 0.75 -0.2
93,949 + H281DRAFT_06309 0.88 -0.2
93,953 - H281DRAFT_06309 0.89 -1.0
93,967 + +0.6
93,968 - -1.2
93,968 - +0.1
93,968 - +0.2
93,979 - -0.6
93,984 + -0.5
93,984 + -0.5
93,984 + -2.7
94,028 + +0.2
94,028 + -0.5
94,210 - H281DRAFT_06310 0.35 -0.8
94,210 - H281DRAFT_06310 0.35 -0.1
94,210 - H281DRAFT_06310 0.35 -0.0
94,281 - H281DRAFT_06310 0.48 -0.3
94,286 + H281DRAFT_06310 0.49 -1.9
94,287 - H281DRAFT_06310 0.49 +1.4
94,333 + H281DRAFT_06310 0.57 -1.0
94,333 + H281DRAFT_06310 0.57 -1.5
94,334 - H281DRAFT_06310 0.57 -0.3
94,371 - H281DRAFT_06310 0.64 +0.2
94,371 - H281DRAFT_06310 0.64 +1.0
94,371 - +0.5
94,408 + H281DRAFT_06310 0.70 +0.1
94,559 + -0.6
94,743 - +0.2
95,273 + H281DRAFT_06311 0.66 +0.0
95,273 + +0.6
95,274 - H281DRAFT_06311 0.67 +0.1
95,274 - H281DRAFT_06311 0.67 +0.3
95,274 - H281DRAFT_06311 0.67 +2.0
95,274 - H281DRAFT_06311 0.67 -0.6
95,274 - H281DRAFT_06311 0.67 +1.3
95,382 + H281DRAFT_06311 0.81 +0.2
95,382 + H281DRAFT_06311 0.81 +0.4
95,383 - H281DRAFT_06311 0.81 +1.5
95,383 - H281DRAFT_06311 0.81 -0.2
95,383 - H281DRAFT_06311 0.81 +0.1
95,411 + H281DRAFT_06311 0.85 +0.3
95,412 - H281DRAFT_06311 0.85 +0.1
95,530 + +0.4
95,531 - +0.5
95,537 + -1.5
95,538 - +0.2
95,538 - +2.0
95,692 + H281DRAFT_06312 0.34 +0.4
95,692 + H281DRAFT_06312 0.34 +1.1
95,692 + H281DRAFT_06312 0.34 -0.2
95,693 - H281DRAFT_06312 0.34 +2.2
95,693 - H281DRAFT_06312 0.34 +0.2
95,693 - H281DRAFT_06312 0.34 +0.3
95,693 - H281DRAFT_06312 0.34 -0.1
95,698 + H281DRAFT_06312 0.35 +0.8
95,698 + H281DRAFT_06312 0.35 -0.5
95,698 + H281DRAFT_06312 0.35 -1.3
95,698 + H281DRAFT_06312 0.35 -0.7
95,698 + H281DRAFT_06312 0.35 +1.0
95,698 + H281DRAFT_06312 0.35 +3.0
95,698 + H281DRAFT_06312 0.35 +0.6
95,698 + H281DRAFT_06312 0.35 +0.4
95,698 + H281DRAFT_06312 0.35 -0.5
95,698 + H281DRAFT_06312 0.35 +0.2
95,698 + H281DRAFT_06312 0.35 +0.8
95,698 + H281DRAFT_06312 0.35 -0.3
95,699 - H281DRAFT_06312 0.35 +0.9
95,699 - H281DRAFT_06312 0.35 +0.2
95,699 - H281DRAFT_06312 0.35 +0.2
95,699 - H281DRAFT_06312 0.35 +0.5
95,797 + H281DRAFT_06312 0.57 -0.2
95,797 + H281DRAFT_06312 0.57 +0.1
95,798 - H281DRAFT_06312 0.57 +0.6
95,798 - H281DRAFT_06312 0.57 -0.2
95,798 - H281DRAFT_06312 0.57 +0.6
95,798 - H281DRAFT_06312 0.57 +0.7
95,840 + H281DRAFT_06312 0.67 -1.0
95,872 + H281DRAFT_06312 0.74 +0.5
95,873 - H281DRAFT_06312 0.74 -0.1
95,970 + -0.4
96,027 + +0.6
96,092 + +0.3
96,092 + +0.2
96,093 - -0.6
96,097 + +1.3
96,150 + -0.4
96,150 + +0.6
96,150 + -1.3
96,151 - -1.4
96,264 + H281DRAFT_06313 0.23 -0.5
96,264 + H281DRAFT_06313 0.23 -0.3
96,265 - H281DRAFT_06313 0.23 +0.2
96,267 - H281DRAFT_06313 0.23 -0.1
96,267 - H281DRAFT_06313 0.23 +1.3
96,354 + H281DRAFT_06313 0.33 +0.3
96,355 - H281DRAFT_06313 0.33 -0.5
96,417 + H281DRAFT_06313 0.40 +0.6
96,417 + H281DRAFT_06313 0.40 +0.8
96,418 - H281DRAFT_06313 0.41 +0.3
96,418 - H281DRAFT_06313 0.41 +0.2
96,418 - H281DRAFT_06313 0.41 -0.3
96,433 - H281DRAFT_06313 0.42 -0.5
96,473 + H281DRAFT_06313 0.47 -0.3
96,473 + H281DRAFT_06313 0.47 -0.2
96,473 + H281DRAFT_06313 0.47 +0.4
96,486 + H281DRAFT_06313 0.48 -0.5
96,487 - H281DRAFT_06313 0.49 +0.6
96,487 - H281DRAFT_06313 0.49 -0.5

Or see this region's nucleotide sequence