Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06271

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06270 and H281DRAFT_06271 are separated by 81 nucleotidesH281DRAFT_06271 and H281DRAFT_06272 are separated by 9 nucleotidesH281DRAFT_06272 and H281DRAFT_06273 overlap by 4 nucleotides H281DRAFT_06270: H281DRAFT_06270 - signal recognition particle subunit FFH/SRP54 (srp54), at 50,903 to 52,270 _06270 H281DRAFT_06271: H281DRAFT_06271 - ABC-type uncharacterized transport system, permease component, at 52,352 to 53,305 _06271 H281DRAFT_06272: H281DRAFT_06272 - uncharacterized protein, at 53,315 to 53,632 _06272 H281DRAFT_06273: H281DRAFT_06273 - AmpD protein, at 53,629 to 54,225 _06273 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 52.336 kb on - strandat 52.336 kb on - strandat 52.341 kb on - strandat 52.352 kb on - strandat 52.362 kb on + strandat 52.362 kb on + strandat 52.362 kb on + strandat 52.362 kb on + strandat 52.362 kb on + strandat 52.362 kb on + strandat 52.362 kb on + strandat 52.362 kb on + strandat 52.362 kb on + strandat 52.363 kb on - strandat 52.363 kb on - strandat 52.363 kb on - strandat 52.363 kb on - strandat 52.363 kb on - strandat 52.367 kb on + strandat 52.367 kb on + strandat 52.367 kb on + strandat 52.367 kb on + strandat 52.368 kb on - strandat 52.368 kb on - strandat 52.682 kb on + strand, within H281DRAFT_06271at 52.682 kb on + strand, within H281DRAFT_06271at 52.682 kb on + strand, within H281DRAFT_06271at 52.682 kb on + strand, within H281DRAFT_06271at 52.683 kb on - strand, within H281DRAFT_06271at 52.683 kb on - strand, within H281DRAFT_06271at 52.683 kb on - strand, within H281DRAFT_06271at 52.847 kb on + strand, within H281DRAFT_06271at 52.848 kb on - strand, within H281DRAFT_06271at 52.848 kb on - strand, within H281DRAFT_06271at 53.298 kb on + strandat 53.298 kb on + strandat 53.340 kb on + strandat 53.340 kb on + strandat 53.341 kb on - strandat 53.341 kb on - strandat 53.341 kb on - strandat 53.537 kb on - strand, within H281DRAFT_06272at 53.831 kb on - strand, within H281DRAFT_06273at 53.833 kb on + strand, within H281DRAFT_06273at 54.200 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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52,336 - -0.6
52,336 - +0.7
52,341 - -3.7
52,352 - -1.0
52,362 + -1.2
52,362 + +0.5
52,362 + +0.1
52,362 + +0.8
52,362 + +0.5
52,362 + +0.3
52,362 + -1.7
52,362 + +0.4
52,362 + +0.8
52,363 - -1.8
52,363 - -0.3
52,363 - -2.0
52,363 - -0.1
52,363 - -1.6
52,367 + +1.1
52,367 + +1.7
52,367 + +2.7
52,367 + +1.0
52,368 - -1.2
52,368 - -1.6
52,682 + H281DRAFT_06271 0.35 -0.0
52,682 + H281DRAFT_06271 0.35 +1.1
52,682 + H281DRAFT_06271 0.35 -0.3
52,682 + H281DRAFT_06271 0.35 +0.6
52,683 - H281DRAFT_06271 0.35 -1.0
52,683 - H281DRAFT_06271 0.35 -0.8
52,683 - H281DRAFT_06271 0.35 -1.3
52,847 + H281DRAFT_06271 0.52 +1.5
52,848 - H281DRAFT_06271 0.52 -0.4
52,848 - H281DRAFT_06271 0.52 -0.8
53,298 + +0.8
53,298 + +0.3
53,340 + +1.1
53,340 + -0.4
53,341 - -0.1
53,341 - +0.7
53,341 - -0.1
53,537 - H281DRAFT_06272 0.70 +0.2
53,831 - H281DRAFT_06273 0.34 +0.4
53,833 + H281DRAFT_06273 0.34 +0.3
54,200 - -0.2

Or see this region's nucleotide sequence