Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06227

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06226 and H281DRAFT_06227 are separated by 197 nucleotidesH281DRAFT_06227 and H281DRAFT_06228 are separated by 302 nucleotides H281DRAFT_06226: H281DRAFT_06226 - long-chain acyl-CoA synthetase, at 4,060 to 5,733 _06226 H281DRAFT_06227: H281DRAFT_06227 - Outer membrane protein (porin), at 5,931 to 7,106 _06227 H281DRAFT_06228: H281DRAFT_06228 - ubiquinone biosynthesis monooxygenase Coq7, at 7,409 to 8,047 _06228 Position (kb) 5 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4.993 kb on + strand, within H281DRAFT_06226at 4.993 kb on + strand, within H281DRAFT_06226at 4.993 kb on + strand, within H281DRAFT_06226at 5.025 kb on + strand, within H281DRAFT_06226at 5.025 kb on + strand, within H281DRAFT_06226at 5.115 kb on + strand, within H281DRAFT_06226at 5.115 kb on + strand, within H281DRAFT_06226at 5.116 kb on - strand, within H281DRAFT_06226at 5.116 kb on - strandat 5.134 kb on + strand, within H281DRAFT_06226at 5.134 kb on + strand, within H281DRAFT_06226at 5.134 kb on + strand, within H281DRAFT_06226at 5.134 kb on + strand, within H281DRAFT_06226at 5.135 kb on - strand, within H281DRAFT_06226at 5.135 kb on - strand, within H281DRAFT_06226at 5.191 kb on + strand, within H281DRAFT_06226at 5.191 kb on + strand, within H281DRAFT_06226at 5.192 kb on - strand, within H281DRAFT_06226at 5.192 kb on - strand, within H281DRAFT_06226at 5.192 kb on - strand, within H281DRAFT_06226at 5.194 kb on - strand, within H281DRAFT_06226at 5.464 kb on + strand, within H281DRAFT_06226at 5.486 kb on + strand, within H281DRAFT_06226at 5.486 kb on + strand, within H281DRAFT_06226at 5.486 kb on + strand, within H281DRAFT_06226at 5.487 kb on - strand, within H281DRAFT_06226at 5.559 kb on + strand, within H281DRAFT_06226at 5.630 kb on + strandat 5.638 kb on + strandat 5.638 kb on + strandat 5.639 kb on - strandat 5.676 kb on - strandat 5.745 kb on + strandat 5.745 kb on + strandat 5.746 kb on - strandat 5.746 kb on - strandat 5.750 kb on + strandat 5.751 kb on - strandat 5.751 kb on - strandat 5.751 kb on - strandat 5.877 kb on + strandat 5.923 kb on - strandat 5.929 kb on + strandat 5.929 kb on + strandat 5.929 kb on + strandat 5.929 kb on + strandat 5.930 kb on - strandat 5.932 kb on + strandat 5.932 kb on + strandat 6.030 kb on - strandat 6.045 kb on + strandat 6.045 kb on + strandat 6.046 kb on - strandat 6.067 kb on + strand, within H281DRAFT_06227at 6.067 kb on + strand, within H281DRAFT_06227at 6.068 kb on - strandat 6.068 kb on - strand, within H281DRAFT_06227at 6.068 kb on - strand, within H281DRAFT_06227at 6.082 kb on + strand, within H281DRAFT_06227at 6.082 kb on + strand, within H281DRAFT_06227at 6.083 kb on - strandat 6.093 kb on - strand, within H281DRAFT_06227at 6.093 kb on - strand, within H281DRAFT_06227at 6.109 kb on + strand, within H281DRAFT_06227at 6.109 kb on + strand, within H281DRAFT_06227at 6.136 kb on + strand, within H281DRAFT_06227at 6.178 kb on + strand, within H281DRAFT_06227at 6.178 kb on + strand, within H281DRAFT_06227at 6.178 kb on + strand, within H281DRAFT_06227at 6.179 kb on - strand, within H281DRAFT_06227at 6.179 kb on - strand, within H281DRAFT_06227at 6.184 kb on + strand, within H281DRAFT_06227at 6.184 kb on + strand, within H281DRAFT_06227at 6.184 kb on + strand, within H281DRAFT_06227at 6.185 kb on - strand, within H281DRAFT_06227at 6.185 kb on - strand, within H281DRAFT_06227at 6.185 kb on - strand, within H281DRAFT_06227at 6.220 kb on + strand, within H281DRAFT_06227at 6.221 kb on - strand, within H281DRAFT_06227at 6.252 kb on - strand, within H281DRAFT_06227at 6.319 kb on + strand, within H281DRAFT_06227at 6.352 kb on + strand, within H281DRAFT_06227at 6.352 kb on + strand, within H281DRAFT_06227at 6.353 kb on - strand, within H281DRAFT_06227at 6.353 kb on - strand, within H281DRAFT_06227at 6.380 kb on - strand, within H281DRAFT_06227at 6.380 kb on - strand, within H281DRAFT_06227at 6.397 kb on + strand, within H281DRAFT_06227at 6.397 kb on + strand, within H281DRAFT_06227at 6.398 kb on - strand, within H281DRAFT_06227at 6.406 kb on + strand, within H281DRAFT_06227at 6.406 kb on + strand, within H281DRAFT_06227at 6.406 kb on + strand, within H281DRAFT_06227at 6.407 kb on - strand, within H281DRAFT_06227at 6.438 kb on - strand, within H281DRAFT_06227at 6.486 kb on - strand, within H281DRAFT_06227at 6.486 kb on - strand, within H281DRAFT_06227at 6.486 kb on - strand, within H281DRAFT_06227at 6.500 kb on - strand, within H281DRAFT_06227at 6.533 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.567 kb on - strand, within H281DRAFT_06227at 6.595 kb on + strand, within H281DRAFT_06227at 6.596 kb on - strand, within H281DRAFT_06227at 6.596 kb on - strand, within H281DRAFT_06227at 6.622 kb on + strand, within H281DRAFT_06227at 6.623 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.638 kb on - strand, within H281DRAFT_06227at 6.656 kb on + strand, within H281DRAFT_06227at 6.662 kb on - strand, within H281DRAFT_06227at 6.706 kb on + strand, within H281DRAFT_06227at 6.707 kb on - strand, within H281DRAFT_06227at 6.745 kb on + strand, within H281DRAFT_06227at 6.746 kb on - strand, within H281DRAFT_06227at 6.763 kb on + strand, within H281DRAFT_06227at 6.763 kb on + strand, within H281DRAFT_06227at 6.811 kb on + strand, within H281DRAFT_06227at 6.811 kb on + strand, within H281DRAFT_06227at 6.811 kb on + strand, within H281DRAFT_06227at 6.811 kb on + strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.812 kb on - strand, within H281DRAFT_06227at 6.951 kb on - strand, within H281DRAFT_06227at 6.951 kb on - strand, within H281DRAFT_06227at 6.951 kb on - strand, within H281DRAFT_06227at 6.970 kb on + strand, within H281DRAFT_06227at 6.970 kb on + strand, within H281DRAFT_06227at 6.971 kb on - strand, within H281DRAFT_06227at 6.971 kb on - strand, within H281DRAFT_06227at 7.022 kb on + strandat 7.096 kb on + strandat 7.126 kb on - strandat 7.139 kb on - strandat 7.149 kb on + strandat 7.150 kb on - strandat 7.150 kb on - strandat 7.153 kb on + strandat 7.153 kb on + strandat 7.153 kb on + strandat 7.153 kb on + strandat 7.153 kb on + strandat 7.153 kb on + strandat 7.154 kb on - strandat 7.154 kb on - strandat 7.154 kb on - strandat 7.154 kb on - strandat 7.157 kb on + strandat 7.158 kb on - strandat 7.201 kb on + strandat 7.201 kb on + strandat 7.201 kb on + strandat 7.202 kb on - strandat 7.202 kb on - strandat 7.202 kb on - strandat 7.206 kb on + strandat 7.219 kb on - strandat 7.219 kb on - strandat 7.282 kb on - strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.046 kb on - strandat 8.046 kb on - strandat 8.046 kb on - strandat 8.046 kb on - strandat 8.046 kb on - strandat 8.046 kb on - strandat 8.046 kb on - strandat 8.090 kb on + strandat 8.095 kb on + strandat 8.095 kb on + strandat 8.095 kb on + strandat 8.096 kb on - strandat 8.096 kb on - strandat 8.096 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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4,993 + H281DRAFT_06226 0.56 +0.6
4,993 + H281DRAFT_06226 0.56 -0.0
4,993 + H281DRAFT_06226 0.56 +0.9
5,025 + H281DRAFT_06226 0.58 +1.0
5,025 + H281DRAFT_06226 0.58 -0.9
5,115 + H281DRAFT_06226 0.63 -0.1
5,115 + H281DRAFT_06226 0.63 -0.9
5,116 - H281DRAFT_06226 0.63 -0.2
5,116 - +1.0
5,134 + H281DRAFT_06226 0.64 -1.4
5,134 + H281DRAFT_06226 0.64 -1.5
5,134 + H281DRAFT_06226 0.64 +0.1
5,134 + H281DRAFT_06226 0.64 +0.2
5,135 - H281DRAFT_06226 0.64 -0.5
5,135 - H281DRAFT_06226 0.64 -0.2
5,191 + H281DRAFT_06226 0.68 -0.6
5,191 + H281DRAFT_06226 0.68 +0.5
5,192 - H281DRAFT_06226 0.68 -0.6
5,192 - H281DRAFT_06226 0.68 +1.1
5,192 - H281DRAFT_06226 0.68 +0.2
5,194 - H281DRAFT_06226 0.68 -0.2
5,464 + H281DRAFT_06226 0.84 +1.0
5,486 + H281DRAFT_06226 0.85 -0.6
5,486 + H281DRAFT_06226 0.85 -0.4
5,486 + H281DRAFT_06226 0.85 -0.3
5,487 - H281DRAFT_06226 0.85 -0.0
5,559 + H281DRAFT_06226 0.90 +0.4
5,630 + +0.4
5,638 + +0.1
5,638 + +0.3
5,639 - -0.5
5,676 - +0.2
5,745 + +0.2
5,745 + +0.8
5,746 - -0.1
5,746 - -2.1
5,750 + -0.2
5,751 - +0.2
5,751 - +0.3
5,751 - +0.4
5,877 + +0.2
5,923 - +0.3
5,929 + +3.3
5,929 + +0.7
5,929 + -0.2
5,929 + +0.1
5,930 - -0.3
5,932 + -0.5
5,932 + +0.8
6,030 - +0.3
6,045 + -0.6
6,045 + -0.4
6,046 - -0.3
6,067 + H281DRAFT_06227 0.12 +1.0
6,067 + H281DRAFT_06227 0.12 +0.3
6,068 - +0.4
6,068 - H281DRAFT_06227 0.12 -0.8
6,068 - H281DRAFT_06227 0.12 -0.4
6,082 + H281DRAFT_06227 0.13 +0.5
6,082 + H281DRAFT_06227 0.13 +1.3
6,083 - +1.0
6,093 - H281DRAFT_06227 0.14 -0.8
6,093 - H281DRAFT_06227 0.14 +0.8
6,109 + H281DRAFT_06227 0.15 -2.2
6,109 + H281DRAFT_06227 0.15 -1.9
6,136 + H281DRAFT_06227 0.17 -2.7
6,178 + H281DRAFT_06227 0.21 +0.5
6,178 + H281DRAFT_06227 0.21 -0.4
6,178 + H281DRAFT_06227 0.21 +0.1
6,179 - H281DRAFT_06227 0.21 -0.2
6,179 - H281DRAFT_06227 0.21 -0.5
6,184 + H281DRAFT_06227 0.22 -0.6
6,184 + H281DRAFT_06227 0.22 -1.8
6,184 + H281DRAFT_06227 0.22 -1.1
6,185 - H281DRAFT_06227 0.22 -1.1
6,185 - H281DRAFT_06227 0.22 +0.1
6,185 - H281DRAFT_06227 0.22 -0.5
6,220 + H281DRAFT_06227 0.25 -1.3
6,221 - H281DRAFT_06227 0.25 -0.5
6,252 - H281DRAFT_06227 0.27 -1.1
6,319 + H281DRAFT_06227 0.33 +0.4
6,352 + H281DRAFT_06227 0.36 -0.1
6,352 + H281DRAFT_06227 0.36 +0.5
6,353 - H281DRAFT_06227 0.36 -0.4
6,353 - H281DRAFT_06227 0.36 -0.7
6,380 - H281DRAFT_06227 0.38 +1.3
6,380 - H281DRAFT_06227 0.38 +1.3
6,397 + H281DRAFT_06227 0.40 +0.8
6,397 + H281DRAFT_06227 0.40 -0.3
6,398 - H281DRAFT_06227 0.40 +1.5
6,406 + H281DRAFT_06227 0.40 -1.3
6,406 + H281DRAFT_06227 0.40 -1.1
6,406 + H281DRAFT_06227 0.40 -0.5
6,407 - H281DRAFT_06227 0.40 +0.1
6,438 - H281DRAFT_06227 0.43 +0.2
6,486 - H281DRAFT_06227 0.47 +0.2
6,486 - H281DRAFT_06227 0.47 -2.2
6,486 - H281DRAFT_06227 0.47 -0.0
6,500 - H281DRAFT_06227 0.48 -2.2
6,533 - H281DRAFT_06227 0.51 -1.6
6,567 - H281DRAFT_06227 0.54 +0.2
6,567 - H281DRAFT_06227 0.54 +2.0
6,567 - H281DRAFT_06227 0.54 -0.2
6,567 - H281DRAFT_06227 0.54 +0.1
6,567 - H281DRAFT_06227 0.54 -0.1
6,567 - H281DRAFT_06227 0.54 +0.0
6,595 + H281DRAFT_06227 0.56 +0.0
6,596 - H281DRAFT_06227 0.57 -0.1
6,596 - H281DRAFT_06227 0.57 -0.3
6,622 + H281DRAFT_06227 0.59 +0.4
6,623 - H281DRAFT_06227 0.59 -1.8
6,638 - H281DRAFT_06227 0.60 +0.5
6,638 - H281DRAFT_06227 0.60 +0.4
6,638 - H281DRAFT_06227 0.60 +0.3
6,638 - H281DRAFT_06227 0.60 +0.3
6,638 - H281DRAFT_06227 0.60 +0.2
6,656 + H281DRAFT_06227 0.62 -1.3
6,662 - H281DRAFT_06227 0.62 -0.8
6,706 + H281DRAFT_06227 0.66 +0.1
6,707 - H281DRAFT_06227 0.66 -2.7
6,745 + H281DRAFT_06227 0.69 -0.9
6,746 - H281DRAFT_06227 0.69 -0.4
6,763 + H281DRAFT_06227 0.71 -0.8
6,763 + H281DRAFT_06227 0.71 -0.3
6,811 + H281DRAFT_06227 0.75 -0.1
6,811 + H281DRAFT_06227 0.75 -0.1
6,811 + H281DRAFT_06227 0.75 +0.8
6,811 + H281DRAFT_06227 0.75 -0.7
6,812 - H281DRAFT_06227 0.75 +0.3
6,812 - H281DRAFT_06227 0.75 +0.1
6,812 - H281DRAFT_06227 0.75 +0.4
6,812 - H281DRAFT_06227 0.75 -0.3
6,812 - H281DRAFT_06227 0.75 -1.2
6,812 - H281DRAFT_06227 0.75 +0.2
6,812 - H281DRAFT_06227 0.75 -0.1
6,951 - H281DRAFT_06227 0.87 -0.1
6,951 - H281DRAFT_06227 0.87 +0.1
6,951 - H281DRAFT_06227 0.87 +0.2
6,970 + H281DRAFT_06227 0.88 -0.3
6,970 + H281DRAFT_06227 0.88 -0.4
6,971 - H281DRAFT_06227 0.88 -0.3
6,971 - H281DRAFT_06227 0.88 +0.2
7,022 + -1.4
7,096 + -1.6
7,126 - +0.1
7,139 - +0.5
7,149 + +0.3
7,150 - +0.2
7,150 - +1.8
7,153 + -1.4
7,153 + -2.1
7,153 + -0.1
7,153 + +0.8
7,153 + -0.7
7,153 + -0.8
7,154 - +0.3
7,154 - +0.2
7,154 - -0.4
7,154 - +0.4
7,157 + +0.1
7,158 - +0.2
7,201 + -0.0
7,201 + -1.0
7,201 + -0.0
7,202 - -0.0
7,202 - -0.9
7,202 - +0.3
7,206 + +1.0
7,219 - +1.7
7,219 - -0.8
7,282 - +0.4
8,045 + +0.1
8,045 + +0.6
8,045 + +0.9
8,045 + -1.0
8,045 + -0.3
8,045 + +0.7
8,045 + +0.2
8,045 + -0.9
8,045 + -0.8
8,045 + +0.3
8,045 + -0.5
8,046 - -0.2
8,046 - -0.7
8,046 - -0.6
8,046 - -0.8
8,046 - +1.0
8,046 - +0.5
8,046 - -0.5
8,090 + -1.4
8,095 + -1.9
8,095 + +0.1
8,095 + -1.1
8,096 - +0.9
8,096 - -0.6
8,096 - -1.4

Or see this region's nucleotide sequence