Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06142

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06141 and H281DRAFT_06142 are separated by 58 nucleotidesH281DRAFT_06142 and H281DRAFT_06143 are separated by 308 nucleotides H281DRAFT_06141: H281DRAFT_06141 - hypothetical protein, at 32,614 to 32,907 _06141 H281DRAFT_06142: H281DRAFT_06142 - hypothetical protein, at 32,966 to 33,337 _06142 H281DRAFT_06143: H281DRAFT_06143 - hypothetical protein, at 33,646 to 34,392 _06143 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2at 31.975 kb on - strandat 32.012 kb on + strandat 32.041 kb on + strandat 32.083 kb on + strandat 32.083 kb on + strandat 32.131 kb on + strandat 32.200 kb on - strandat 32.254 kb on - strandat 32.254 kb on - strandat 32.257 kb on - strandat 32.325 kb on - strandat 32.333 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.372 kb on + strandat 32.373 kb on - strandat 32.373 kb on - strandat 32.373 kb on - strandat 32.373 kb on - strandat 32.421 kb on + strandat 32.458 kb on + strandat 32.459 kb on - strandat 32.498 kb on + strandat 32.531 kb on - strandat 32.579 kb on + strandat 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.666 kb on + strand, within H281DRAFT_06141at 32.712 kb on - strand, within H281DRAFT_06141at 32.712 kb on - strand, within H281DRAFT_06141at 32.846 kb on + strand, within H281DRAFT_06141at 32.847 kb on - strand, within H281DRAFT_06141at 32.847 kb on - strand, within H281DRAFT_06141at 32.942 kb on + strandat 32.942 kb on + strandat 32.943 kb on - strandat 32.970 kb on + strandat 32.971 kb on - strandat 32.971 kb on - strandat 33.006 kb on - strand, within H281DRAFT_06142at 33.183 kb on + strand, within H281DRAFT_06142at 33.183 kb on + strand, within H281DRAFT_06142at 33.183 kb on + strand, within H281DRAFT_06142at 33.183 kb on + strand, within H281DRAFT_06142at 33.183 kb on + strand, within H281DRAFT_06142at 33.184 kb on - strand, within H281DRAFT_06142at 33.184 kb on - strand, within H281DRAFT_06142at 33.184 kb on - strand, within H281DRAFT_06142at 33.216 kb on + strandat 33.216 kb on + strand, within H281DRAFT_06142at 33.216 kb on + strand, within H281DRAFT_06142at 33.305 kb on + strandat 33.305 kb on + strandat 33.320 kb on + strandat 33.341 kb on - strandat 33.359 kb on + strandat 33.359 kb on + strandat 33.359 kb on + strandat 33.360 kb on - strandat 33.368 kb on - strandat 33.368 kb on - strandat 33.511 kb on + strandat 33.511 kb on + strandat 33.536 kb on - strandat 33.652 kb on + strandat 33.652 kb on + strandat 33.887 kb on + strand, within H281DRAFT_06143at 33.888 kb on - strand, within H281DRAFT_06143at 34.072 kb on + strand, within H281DRAFT_06143at 34.181 kb on - strand, within H281DRAFT_06143at 34.181 kb on - strand, within H281DRAFT_06143

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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31,975 - +0.3
32,012 + -0.3
32,041 + +0.4
32,083 + +0.2
32,083 + +0.4
32,131 + +1.4
32,200 - +0.0
32,254 - +0.4
32,254 - +0.2
32,257 - +0.8
32,325 - +0.7
32,333 + +0.4
32,372 + -0.2
32,372 + -0.1
32,372 + -0.7
32,372 + -0.6
32,372 + -0.1
32,372 + -0.7
32,372 + +0.3
32,372 + -0.0
32,372 + +0.5
32,372 + -0.6
32,373 - -0.5
32,373 - -1.7
32,373 - +0.3
32,373 - -0.3
32,421 + +0.0
32,458 + +1.4
32,459 - +1.8
32,498 + -1.9
32,531 - -0.1
32,579 + -0.7
32,666 + H281DRAFT_06141 0.18 -0.5
32,666 + H281DRAFT_06141 0.18 +0.9
32,666 + H281DRAFT_06141 0.18 +1.0
32,666 + H281DRAFT_06141 0.18 -0.0
32,666 + H281DRAFT_06141 0.18 -0.3
32,666 + H281DRAFT_06141 0.18 +1.3
32,712 - H281DRAFT_06141 0.33 -1.7
32,712 - H281DRAFT_06141 0.33 +0.4
32,846 + H281DRAFT_06141 0.79 +0.8
32,847 - H281DRAFT_06141 0.79 -0.2
32,847 - H281DRAFT_06141 0.79 +0.7
32,942 + -0.5
32,942 + -0.6
32,943 - +0.3
32,970 + +0.6
32,971 - +0.2
32,971 - -0.2
33,006 - H281DRAFT_06142 0.11 -0.1
33,183 + H281DRAFT_06142 0.58 +0.2
33,183 + H281DRAFT_06142 0.58 +0.6
33,183 + H281DRAFT_06142 0.58 +0.0
33,183 + H281DRAFT_06142 0.58 -0.8
33,183 + H281DRAFT_06142 0.58 +0.8
33,184 - H281DRAFT_06142 0.59 +0.2
33,184 - H281DRAFT_06142 0.59 +0.7
33,184 - H281DRAFT_06142 0.59 +0.5
33,216 + +0.9
33,216 + H281DRAFT_06142 0.67 +0.3
33,216 + H281DRAFT_06142 0.67 +1.0
33,305 + +0.1
33,305 + +0.7
33,320 + -0.4
33,341 - +0.2
33,359 + +0.5
33,359 + +0.6
33,359 + -1.2
33,360 - +0.8
33,368 - -0.0
33,368 - +0.8
33,511 + +0.0
33,511 + +0.4
33,536 - +0.5
33,652 + +0.3
33,652 + +0.4
33,887 + H281DRAFT_06143 0.32 +0.3
33,888 - H281DRAFT_06143 0.32 -0.7
34,072 + H281DRAFT_06143 0.57 +1.0
34,181 - H281DRAFT_06143 0.72 +1.4
34,181 - H281DRAFT_06143 0.72 +1.7

Or see this region's nucleotide sequence