Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06023

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06022 and H281DRAFT_06023 are separated by 88 nucleotidesH281DRAFT_06023 and H281DRAFT_06024 are separated by 39 nucleotides H281DRAFT_06022: H281DRAFT_06022 - DNA polymerase I, at 26,253 to 28,994 _06022 H281DRAFT_06023: H281DRAFT_06023 - hypothetical protein, at 29,083 to 29,739 _06023 H281DRAFT_06024: H281DRAFT_06024 - transcriptional regulator, LysR family, at 29,779 to 30,711 _06024 Position (kb) 29 30Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 28.995 kb on + strandat 29.094 kb on + strandat 29.095 kb on - strandat 29.155 kb on + strand, within H281DRAFT_06023at 29.155 kb on + strand, within H281DRAFT_06023at 29.188 kb on + strand, within H281DRAFT_06023at 29.192 kb on - strand, within H281DRAFT_06023at 29.192 kb on - strandat 29.407 kb on - strand, within H281DRAFT_06023at 29.481 kb on - strand, within H281DRAFT_06023at 29.481 kb on - strand, within H281DRAFT_06023at 29.481 kb on - strand, within H281DRAFT_06023at 29.672 kb on - strand, within H281DRAFT_06023at 29.731 kb on + strandat 29.732 kb on - strandat 29.738 kb on - strandat 29.738 kb on - strandat 30.025 kb on + strand, within H281DRAFT_06024at 30.026 kb on - strand, within H281DRAFT_06024at 30.026 kb on - strand, within H281DRAFT_06024at 30.026 kb on - strand, within H281DRAFT_06024at 30.048 kb on - strand, within H281DRAFT_06024at 30.048 kb on - strand, within H281DRAFT_06024at 30.048 kb on - strand, within H281DRAFT_06024at 30.452 kb on - strand, within H281DRAFT_06024at 30.507 kb on - strand, within H281DRAFT_06024at 30.723 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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28,995 + +1.4
29,094 + -0.1
29,095 - -1.4
29,155 + H281DRAFT_06023 0.11 -4.1
29,155 + H281DRAFT_06023 0.11 -2.6
29,188 + H281DRAFT_06023 0.16 -3.9
29,192 - H281DRAFT_06023 0.17 -2.4
29,192 - +1.8
29,407 - H281DRAFT_06023 0.49 +0.2
29,481 - H281DRAFT_06023 0.61 -1.3
29,481 - H281DRAFT_06023 0.61 -2.8
29,481 - H281DRAFT_06023 0.61 -0.9
29,672 - H281DRAFT_06023 0.90 -0.3
29,731 + -0.4
29,732 - +0.2
29,738 - +0.5
29,738 - +0.7
30,025 + H281DRAFT_06024 0.26 +0.5
30,026 - H281DRAFT_06024 0.26 -0.7
30,026 - H281DRAFT_06024 0.26 +1.9
30,026 - H281DRAFT_06024 0.26 +0.4
30,048 - H281DRAFT_06024 0.29 +0.9
30,048 - H281DRAFT_06024 0.29 +0.9
30,048 - H281DRAFT_06024 0.29 +1.0
30,452 - H281DRAFT_06024 0.72 +0.8
30,507 - H281DRAFT_06024 0.78 +0.5
30,723 + +0.3

Or see this region's nucleotide sequence