Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06006

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06005 and H281DRAFT_06006 are separated by 279 nucleotidesH281DRAFT_06006 and H281DRAFT_06007 are separated by 105 nucleotides H281DRAFT_06005: H281DRAFT_06005 - methyltransferase, FkbM family, at 6,078 to 6,788 _06005 H281DRAFT_06006: H281DRAFT_06006 - MEKHLA domain-containing protein, at 7,068 to 7,523 _06006 H281DRAFT_06007: H281DRAFT_06007 - amino acid ABC transporter substrate-binding protein, PAAT family, at 7,629 to 8,360 _06007 Position (kb) 7 8Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6.079 kb on + strandat 6.079 kb on + strandat 6.108 kb on - strandat 6.112 kb on - strandat 6.152 kb on + strand, within H281DRAFT_06005at 6.173 kb on - strand, within H281DRAFT_06005at 6.212 kb on + strand, within H281DRAFT_06005at 6.247 kb on + strand, within H281DRAFT_06005at 6.389 kb on + strand, within H281DRAFT_06005at 6.390 kb on - strand, within H281DRAFT_06005at 6.390 kb on - strand, within H281DRAFT_06005at 6.446 kb on - strand, within H281DRAFT_06005at 6.446 kb on - strand, within H281DRAFT_06005at 6.461 kb on - strand, within H281DRAFT_06005at 6.590 kb on - strand, within H281DRAFT_06005at 6.599 kb on - strand, within H281DRAFT_06005at 6.599 kb on - strand, within H281DRAFT_06005at 6.602 kb on + strand, within H281DRAFT_06005at 6.602 kb on + strand, within H281DRAFT_06005at 6.644 kb on - strand, within H281DRAFT_06005at 6.644 kb on - strand, within H281DRAFT_06005at 6.673 kb on - strand, within H281DRAFT_06005at 6.712 kb on + strand, within H281DRAFT_06005at 6.712 kb on + strand, within H281DRAFT_06005at 6.712 kb on + strand, within H281DRAFT_06005at 6.713 kb on - strand, within H281DRAFT_06005at 6.713 kb on - strand, within H281DRAFT_06005at 6.776 kb on + strandat 6.829 kb on + strandat 6.859 kb on + strandat 6.859 kb on + strandat 6.927 kb on + strandat 7.036 kb on + strandat 7.060 kb on + strandat 7.060 kb on + strandat 7.060 kb on + strandat 7.060 kb on + strandat 7.345 kb on + strand, within H281DRAFT_06006at 7.346 kb on - strand, within H281DRAFT_06006at 7.346 kb on - strand, within H281DRAFT_06006at 7.436 kb on + strand, within H281DRAFT_06006at 7.437 kb on - strand, within H281DRAFT_06006at 7.457 kb on + strand, within H281DRAFT_06006at 7.474 kb on + strand, within H281DRAFT_06006at 7.478 kb on + strandat 7.478 kb on + strandat 7.479 kb on - strandat 7.479 kb on - strandat 7.479 kb on - strandat 7.479 kb on - strandat 7.528 kb on + strandat 7.529 kb on - strandat 7.627 kb on + strandat 7.628 kb on - strandat 7.714 kb on + strand, within H281DRAFT_06007at 7.714 kb on + strand, within H281DRAFT_06007at 7.892 kb on - strand, within H281DRAFT_06007at 7.892 kb on - strand, within H281DRAFT_06007at 7.923 kb on + strand, within H281DRAFT_06007at 8.053 kb on + strand, within H281DRAFT_06007at 8.053 kb on + strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.054 kb on - strand, within H281DRAFT_06007at 8.193 kb on + strand, within H281DRAFT_06007at 8.193 kb on + strand, within H281DRAFT_06007at 8.194 kb on - strand, within H281DRAFT_06007at 8.220 kb on - strand, within H281DRAFT_06007at 8.402 kb on + strandat 8.403 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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6,079 + +0.8
6,079 + +0.5
6,108 - +0.9
6,112 - +0.9
6,152 + H281DRAFT_06005 0.10 -0.9
6,173 - H281DRAFT_06005 0.13 +0.2
6,212 + H281DRAFT_06005 0.19 -0.3
6,247 + H281DRAFT_06005 0.24 +2.8
6,389 + H281DRAFT_06005 0.44 -0.7
6,390 - H281DRAFT_06005 0.44 +0.4
6,390 - H281DRAFT_06005 0.44 -0.1
6,446 - H281DRAFT_06005 0.52 +0.7
6,446 - H281DRAFT_06005 0.52 +0.4
6,461 - H281DRAFT_06005 0.54 -0.8
6,590 - H281DRAFT_06005 0.72 -0.4
6,599 - H281DRAFT_06005 0.73 +0.0
6,599 - H281DRAFT_06005 0.73 -0.7
6,602 + H281DRAFT_06005 0.74 +0.2
6,602 + H281DRAFT_06005 0.74 +0.3
6,644 - H281DRAFT_06005 0.80 -2.1
6,644 - H281DRAFT_06005 0.80 -0.7
6,673 - H281DRAFT_06005 0.84 +0.3
6,712 + H281DRAFT_06005 0.89 +0.2
6,712 + H281DRAFT_06005 0.89 -0.4
6,712 + H281DRAFT_06005 0.89 -0.6
6,713 - H281DRAFT_06005 0.89 +0.6
6,713 - H281DRAFT_06005 0.89 +0.2
6,776 + -0.2
6,829 + -0.8
6,859 + -0.1
6,859 + -0.3
6,927 + +0.1
7,036 + +0.9
7,060 + +1.8
7,060 + -0.4
7,060 + +0.4
7,060 + +0.2
7,345 + H281DRAFT_06006 0.61 +0.4
7,346 - H281DRAFT_06006 0.61 +0.5
7,346 - H281DRAFT_06006 0.61 -0.3
7,436 + H281DRAFT_06006 0.81 +0.1
7,437 - H281DRAFT_06006 0.81 -0.3
7,457 + H281DRAFT_06006 0.85 +1.0
7,474 + H281DRAFT_06006 0.89 -0.4
7,478 + -0.2
7,478 + -2.2
7,479 - +1.2
7,479 - +0.1
7,479 - -0.2
7,479 - +0.5
7,528 + -0.6
7,529 - +0.7
7,627 + -0.0
7,628 - -0.2
7,714 + H281DRAFT_06007 0.12 +0.6
7,714 + H281DRAFT_06007 0.12 -0.8
7,892 - H281DRAFT_06007 0.36 +0.4
7,892 - H281DRAFT_06007 0.36 -1.2
7,923 + H281DRAFT_06007 0.40 -0.1
8,053 + H281DRAFT_06007 0.58 +0.4
8,053 + H281DRAFT_06007 0.58 +0.2
8,054 - H281DRAFT_06007 0.58 -1.3
8,054 - H281DRAFT_06007 0.58 +0.5
8,054 - H281DRAFT_06007 0.58 +0.1
8,054 - H281DRAFT_06007 0.58 +0.4
8,193 + H281DRAFT_06007 0.77 +0.2
8,193 + H281DRAFT_06007 0.77 +0.4
8,194 - H281DRAFT_06007 0.77 +0.3
8,220 - H281DRAFT_06007 0.81 +0.3
8,402 + -0.5
8,403 - -0.2

Or see this region's nucleotide sequence