Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06000

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05998 and H281DRAFT_05999 are separated by 158 nucleotidesH281DRAFT_05999 and H281DRAFT_06000 are separated by 87 nucleotidesH281DRAFT_06000 and H281DRAFT_06001 are separated by 95 nucleotidesH281DRAFT_06001 and H281DRAFT_06002 overlap by 4 nucleotides H281DRAFT_05998: H281DRAFT_05998 - hypothetical protein, at 744 to 1,064 _05998 H281DRAFT_05999: H281DRAFT_05999 - hypothetical protein, at 1,223 to 1,927 _05999 H281DRAFT_06000: H281DRAFT_06000 - transcriptional regulator, AraC family, at 2,015 to 2,806 _06000 H281DRAFT_06001: H281DRAFT_06001 - hypothetical protein, at 2,902 to 3,186 _06001 H281DRAFT_06002: H281DRAFT_06002 - NADPH:quinone reductase, at 3,183 to 4,136 _06002 Position (kb) 2 3Strain fitness (log2 ratio) -2 -1 0 1at 1.184 kb on + strandat 1.185 kb on - strandat 1.287 kb on - strandat 1.361 kb on + strand, within H281DRAFT_05999at 1.361 kb on + strand, within H281DRAFT_05999at 1.617 kb on + strand, within H281DRAFT_05999at 1.617 kb on + strand, within H281DRAFT_05999at 1.618 kb on - strand, within H281DRAFT_05999at 1.618 kb on - strandat 1.739 kb on - strand, within H281DRAFT_05999at 1.974 kb on - strandat 2.047 kb on - strandat 2.110 kb on - strand, within H281DRAFT_06000at 2.114 kb on + strand, within H281DRAFT_06000at 2.836 kb on + strandat 2.837 kb on - strandat 2.878 kb on + strandat 3.330 kb on + strand, within H281DRAFT_06002at 3.586 kb on + strand, within H281DRAFT_06002

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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1,184 + +0.4
1,185 - -0.0
1,287 - +0.4
1,361 + H281DRAFT_05999 0.20 +0.0
1,361 + H281DRAFT_05999 0.20 +0.3
1,617 + H281DRAFT_05999 0.56 -0.7
1,617 + H281DRAFT_05999 0.56 +0.3
1,618 - H281DRAFT_05999 0.56 -0.3
1,618 - -0.2
1,739 - H281DRAFT_05999 0.73 +1.2
1,974 - -0.2
2,047 - +0.4
2,110 - H281DRAFT_06000 0.12 +0.1
2,114 + H281DRAFT_06000 0.12 +0.8
2,836 + +1.2
2,837 - -0.6
2,878 + -1.8
3,330 + H281DRAFT_06002 0.15 +0.1
3,586 + H281DRAFT_06002 0.42 +0.6

Or see this region's nucleotide sequence