Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05875 and H281DRAFT_05876 are separated by 76 nucleotides H281DRAFT_05876 and H281DRAFT_05877 are separated by 83 nucleotides H281DRAFT_05877 and H281DRAFT_05878 overlap by 4 nucleotides
H281DRAFT_05875: H281DRAFT_05875 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 10,798 to 12,258
_05875
H281DRAFT_05876: H281DRAFT_05876 - transcriptional regulator, TetR family, at 12,335 to 12,955
_05876
H281DRAFT_05877: H281DRAFT_05877 - RND family efflux transporter, MFP subunit, at 13,039 to 14,154
_05877
H281DRAFT_05878: H281DRAFT_05878 - Multidrug efflux pump subunit AcrB, at 14,151 to 17,288
_05878
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 12.134 kb on - strand at 12.186 kb on - strand at 12.497 kb on + strand, within H281DRAFT_05876 at 12.497 kb on + strand, within H281DRAFT_05876 at 12.500 kb on - strand, within H281DRAFT_05876 at 12.503 kb on + strand, within H281DRAFT_05876 at 12.503 kb on + strand, within H281DRAFT_05876 at 12.503 kb on + strand, within H281DRAFT_05876 at 12.568 kb on - strand, within H281DRAFT_05876 at 12.622 kb on - strand at 12.686 kb on + strand, within H281DRAFT_05876 at 12.885 kb on - strand, within H281DRAFT_05876 at 13.454 kb on - strand, within H281DRAFT_05877 at 13.531 kb on - strand, within H281DRAFT_05877 at 13.810 kb on + strand, within H281DRAFT_05877 at 14.413 kb on - strand at 14.721 kb on + strand, within H281DRAFT_05878 at 14.721 kb on + strand, within H281DRAFT_05878
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C) remove 12,134 - -1.1 12,186 - -0.5 12,497 + H281DRAFT_05876 0.26 -2.0 12,497 + H281DRAFT_05876 0.26 -1.3 12,500 - H281DRAFT_05876 0.27 +1.2 12,503 + H281DRAFT_05876 0.27 -1.6 12,503 + H281DRAFT_05876 0.27 -0.9 12,503 + H281DRAFT_05876 0.27 -0.5 12,568 - H281DRAFT_05876 0.38 -1.5 12,622 - +0.8 12,686 + H281DRAFT_05876 0.57 -1.8 12,885 - H281DRAFT_05876 0.89 -3.7 13,454 - H281DRAFT_05877 0.37 -0.3 13,531 - H281DRAFT_05877 0.44 +1.3 13,810 + H281DRAFT_05877 0.69 +1.1 14,413 - +0.1 14,721 + H281DRAFT_05878 0.18 -0.6 14,721 + H281DRAFT_05878 0.18 +0.3
Or see this region's nucleotide sequence