Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05774

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05773 and H281DRAFT_05774 are separated by 231 nucleotidesH281DRAFT_05774 and H281DRAFT_05775 are separated by 40 nucleotidesH281DRAFT_05775 and H281DRAFT_05776 are separated by 58 nucleotides H281DRAFT_05773: H281DRAFT_05773 - flagellar hook-associated protein 3 FlgL, at 47,497 to 48,720 _05773 H281DRAFT_05774: H281DRAFT_05774 - flagellar biosynthetic protein FliR, at 48,952 to 49,734 _05774 H281DRAFT_05775: H281DRAFT_05775 - flagellar biosynthetic protein FliQ, at 49,775 to 50,044 _05775 H281DRAFT_05776: H281DRAFT_05776 - flagellar biosynthetic protein FliP, at 50,103 to 50,936 _05776 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1at 48.167 kb on - strand, within H281DRAFT_05773at 48.167 kb on - strand, within H281DRAFT_05773at 48.196 kb on + strand, within H281DRAFT_05773at 48.196 kb on + strand, within H281DRAFT_05773at 48.197 kb on - strand, within H281DRAFT_05773at 48.197 kb on - strand, within H281DRAFT_05773at 48.568 kb on - strand, within H281DRAFT_05773at 48.634 kb on + strandat 48.635 kb on - strandat 48.635 kb on - strandat 48.693 kb on + strandat 48.694 kb on - strandat 48.694 kb on - strandat 48.739 kb on - strandat 48.739 kb on - strandat 48.827 kb on + strandat 48.831 kb on - strandat 48.855 kb on + strandat 48.856 kb on - strandat 48.918 kb on + strandat 48.954 kb on - strandat 49.057 kb on - strand, within H281DRAFT_05774at 49.349 kb on + strand, within H281DRAFT_05774at 49.350 kb on - strand, within H281DRAFT_05774at 49.718 kb on + strandat 49.719 kb on - strandat 50.001 kb on + strand, within H281DRAFT_05775at 50.001 kb on + strand, within H281DRAFT_05775at 50.001 kb on + strand, within H281DRAFT_05775at 50.002 kb on - strand, within H281DRAFT_05775at 50.002 kb on - strand, within H281DRAFT_05775at 50.309 kb on + strandat 50.313 kb on - strand, within H281DRAFT_05776at 50.500 kb on + strand, within H281DRAFT_05776at 50.513 kb on - strand, within H281DRAFT_05776at 50.725 kb on + strand, within H281DRAFT_05776at 50.725 kb on + strand, within H281DRAFT_05776

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
remove
48,167 - H281DRAFT_05773 0.55 -1.1
48,167 - H281DRAFT_05773 0.55 +1.0
48,196 + H281DRAFT_05773 0.57 -0.9
48,196 + H281DRAFT_05773 0.57 -2.3
48,197 - H281DRAFT_05773 0.57 -0.8
48,197 - H281DRAFT_05773 0.57 -0.2
48,568 - H281DRAFT_05773 0.88 +0.6
48,634 + -0.8
48,635 - +0.0
48,635 - -0.3
48,693 + +0.2
48,694 - +0.6
48,694 - -0.7
48,739 - +0.6
48,739 - -0.4
48,827 + -0.2
48,831 - +0.8
48,855 + -0.3
48,856 - +0.8
48,918 + +0.2
48,954 - -0.3
49,057 - H281DRAFT_05774 0.13 +0.0
49,349 + H281DRAFT_05774 0.51 +0.2
49,350 - H281DRAFT_05774 0.51 +1.1
49,718 + +1.0
49,719 - +0.5
50,001 + H281DRAFT_05775 0.84 +1.1
50,001 + H281DRAFT_05775 0.84 +0.1
50,001 + H281DRAFT_05775 0.84 +0.6
50,002 - H281DRAFT_05775 0.84 +1.7
50,002 - H281DRAFT_05775 0.84 +0.7
50,309 + +1.3
50,313 - H281DRAFT_05776 0.25 +1.4
50,500 + H281DRAFT_05776 0.48 +0.7
50,513 - H281DRAFT_05776 0.49 +0.9
50,725 + H281DRAFT_05776 0.75 +1.1
50,725 + H281DRAFT_05776 0.75 +0.7

Or see this region's nucleotide sequence