Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05643

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05641 and H281DRAFT_05642 overlap by 4 nucleotidesH281DRAFT_05642 and H281DRAFT_05643 are separated by 88 nucleotidesH281DRAFT_05643 and H281DRAFT_05644 are separated by 11 nucleotides H281DRAFT_05641: H281DRAFT_05641 - phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein, at 65,365 to 66,186 _05641 H281DRAFT_05642: H281DRAFT_05642 - phospholipid/cholesterol/gamma-HCH transport system permease protein, at 66,183 to 66,962 _05642 H281DRAFT_05643: H281DRAFT_05643 - phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein, at 67,051 to 67,581 _05643 H281DRAFT_05644: H281DRAFT_05644 - phospholipid-binding lipoprotein MlaA, at 67,593 to 68,648 _05644 Position (kb) 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1at 66.094 kb on - strand, within H281DRAFT_05641at 66.334 kb on + strand, within H281DRAFT_05642at 66.335 kb on - strand, within H281DRAFT_05642at 66.339 kb on - strand, within H281DRAFT_05642at 66.339 kb on - strand, within H281DRAFT_05642at 66.343 kb on - strand, within H281DRAFT_05642at 66.408 kb on + strand, within H281DRAFT_05642at 66.409 kb on - strand, within H281DRAFT_05642at 66.694 kb on - strand, within H281DRAFT_05642at 66.847 kb on - strand, within H281DRAFT_05642at 66.903 kb on + strandat 66.960 kb on + strandat 67.016 kb on + strandat 67.223 kb on + strand, within H281DRAFT_05643at 67.283 kb on - strand, within H281DRAFT_05643at 67.283 kb on - strand, within H281DRAFT_05643at 67.318 kb on + strand, within H281DRAFT_05643at 67.335 kb on + strand, within H281DRAFT_05643at 67.336 kb on - strand, within H281DRAFT_05643at 67.336 kb on - strand, within H281DRAFT_05643at 67.336 kb on - strand, within H281DRAFT_05643at 67.336 kb on - strand, within H281DRAFT_05643at 67.378 kb on + strand, within H281DRAFT_05643at 67.379 kb on - strand, within H281DRAFT_05643at 67.379 kb on - strand, within H281DRAFT_05643at 67.379 kb on - strand, within H281DRAFT_05643at 67.416 kb on + strand, within H281DRAFT_05643at 67.417 kb on - strand, within H281DRAFT_05643at 67.487 kb on - strand, within H281DRAFT_05643at 67.489 kb on - strand, within H281DRAFT_05643at 67.489 kb on - strand, within H281DRAFT_05643at 67.579 kb on + strandat 67.592 kb on - strandat 67.674 kb on - strandat 67.785 kb on + strand, within H281DRAFT_05644at 67.789 kb on + strand, within H281DRAFT_05644at 67.789 kb on + strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.790 kb on - strand, within H281DRAFT_05644at 67.826 kb on + strand, within H281DRAFT_05644at 67.826 kb on + strand, within H281DRAFT_05644at 67.827 kb on - strand, within H281DRAFT_05644at 67.854 kb on + strand, within H281DRAFT_05644at 67.854 kb on + strand, within H281DRAFT_05644at 67.854 kb on + strand, within H281DRAFT_05644at 67.854 kb on + strand, within H281DRAFT_05644at 67.855 kb on - strand, within H281DRAFT_05644at 67.855 kb on - strand, within H281DRAFT_05644at 68.103 kb on + strand, within H281DRAFT_05644at 68.103 kb on + strand, within H281DRAFT_05644at 68.103 kb on + strand, within H281DRAFT_05644at 68.103 kb on + strand, within H281DRAFT_05644at 68.104 kb on - strand, within H281DRAFT_05644at 68.104 kb on - strand, within H281DRAFT_05644at 68.106 kb on + strand, within H281DRAFT_05644at 68.106 kb on + strand, within H281DRAFT_05644at 68.106 kb on + strandat 68.107 kb on - strand, within H281DRAFT_05644at 68.107 kb on - strand, within H281DRAFT_05644at 68.107 kb on - strand, within H281DRAFT_05644at 68.107 kb on - strand, within H281DRAFT_05644at 68.107 kb on - strand, within H281DRAFT_05644at 68.107 kb on - strand, within H281DRAFT_05644at 68.120 kb on + strand, within H281DRAFT_05644at 68.120 kb on + strand, within H281DRAFT_05644at 68.120 kb on + strand, within H281DRAFT_05644at 68.120 kb on + strand, within H281DRAFT_05644at 68.121 kb on - strand, within H281DRAFT_05644at 68.124 kb on + strand, within H281DRAFT_05644at 68.124 kb on + strand, within H281DRAFT_05644at 68.124 kb on + strand, within H281DRAFT_05644at 68.124 kb on + strand, within H281DRAFT_05644at 68.124 kb on + strand, within H281DRAFT_05644at 68.124 kb on + strand, within H281DRAFT_05644at 68.125 kb on - strand, within H281DRAFT_05644at 68.125 kb on - strand, within H281DRAFT_05644at 68.125 kb on - strand, within H281DRAFT_05644at 68.125 kb on - strand, within H281DRAFT_05644at 68.157 kb on + strand, within H281DRAFT_05644at 68.178 kb on - strand, within H281DRAFT_05644at 68.178 kb on - strand, within H281DRAFT_05644at 68.195 kb on + strand, within H281DRAFT_05644at 68.235 kb on + strand, within H281DRAFT_05644at 68.236 kb on - strand, within H281DRAFT_05644at 68.274 kb on + strand, within H281DRAFT_05644at 68.316 kb on + strand, within H281DRAFT_05644at 68.316 kb on + strand, within H281DRAFT_05644at 68.316 kb on + strand, within H281DRAFT_05644at 68.317 kb on - strand, within H281DRAFT_05644at 68.343 kb on + strand, within H281DRAFT_05644at 68.343 kb on + strand, within H281DRAFT_05644

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
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66,094 - H281DRAFT_05641 0.89 -1.4
66,334 + H281DRAFT_05642 0.19 -0.7
66,335 - H281DRAFT_05642 0.19 -0.2
66,339 - H281DRAFT_05642 0.20 -0.3
66,339 - H281DRAFT_05642 0.20 -1.5
66,343 - H281DRAFT_05642 0.21 -0.6
66,408 + H281DRAFT_05642 0.29 -1.8
66,409 - H281DRAFT_05642 0.29 -2.0
66,694 - H281DRAFT_05642 0.66 -1.1
66,847 - H281DRAFT_05642 0.85 -0.2
66,903 + -2.5
66,960 + -0.4
67,016 + +0.3
67,223 + H281DRAFT_05643 0.32 -0.7
67,283 - H281DRAFT_05643 0.44 -1.6
67,283 - H281DRAFT_05643 0.44 -0.6
67,318 + H281DRAFT_05643 0.50 -1.6
67,335 + H281DRAFT_05643 0.53 +0.0
67,336 - H281DRAFT_05643 0.54 -1.3
67,336 - H281DRAFT_05643 0.54 +0.0
67,336 - H281DRAFT_05643 0.54 +0.4
67,336 - H281DRAFT_05643 0.54 -1.3
67,378 + H281DRAFT_05643 0.62 -0.8
67,379 - H281DRAFT_05643 0.62 -0.7
67,379 - H281DRAFT_05643 0.62 -1.9
67,379 - H281DRAFT_05643 0.62 +0.4
67,416 + H281DRAFT_05643 0.69 -1.0
67,417 - H281DRAFT_05643 0.69 -0.5
67,487 - H281DRAFT_05643 0.82 -0.9
67,489 - H281DRAFT_05643 0.82 -0.6
67,489 - H281DRAFT_05643 0.82 -0.6
67,579 + -1.0
67,592 - +0.8
67,674 - +0.3
67,785 + H281DRAFT_05644 0.18 -0.2
67,789 + H281DRAFT_05644 0.19 -0.3
67,789 + H281DRAFT_05644 0.19 -0.2
67,790 - H281DRAFT_05644 0.19 -0.7
67,790 - H281DRAFT_05644 0.19 +1.2
67,790 - H281DRAFT_05644 0.19 +0.3
67,790 - H281DRAFT_05644 0.19 -0.3
67,790 - H281DRAFT_05644 0.19 +0.6
67,790 - H281DRAFT_05644 0.19 -1.6
67,790 - H281DRAFT_05644 0.19 -0.1
67,826 + H281DRAFT_05644 0.22 -0.6
67,826 + H281DRAFT_05644 0.22 +1.4
67,827 - H281DRAFT_05644 0.22 -0.4
67,854 + H281DRAFT_05644 0.25 -0.6
67,854 + H281DRAFT_05644 0.25 +0.2
67,854 + H281DRAFT_05644 0.25 +0.4
67,854 + H281DRAFT_05644 0.25 +0.0
67,855 - H281DRAFT_05644 0.25 +0.3
67,855 - H281DRAFT_05644 0.25 -0.8
68,103 + H281DRAFT_05644 0.48 +0.3
68,103 + H281DRAFT_05644 0.48 -1.1
68,103 + H281DRAFT_05644 0.48 +0.5
68,103 + H281DRAFT_05644 0.48 -0.2
68,104 - H281DRAFT_05644 0.48 +0.7
68,104 - H281DRAFT_05644 0.48 +0.5
68,106 + H281DRAFT_05644 0.49 +0.4
68,106 + H281DRAFT_05644 0.49 +0.2
68,106 + +1.6
68,107 - H281DRAFT_05644 0.49 -0.2
68,107 - H281DRAFT_05644 0.49 -0.4
68,107 - H281DRAFT_05644 0.49 +1.0
68,107 - H281DRAFT_05644 0.49 -0.3
68,107 - H281DRAFT_05644 0.49 +1.4
68,107 - H281DRAFT_05644 0.49 -0.8
68,120 + H281DRAFT_05644 0.50 +0.2
68,120 + H281DRAFT_05644 0.50 +0.7
68,120 + H281DRAFT_05644 0.50 +0.2
68,120 + H281DRAFT_05644 0.50 +0.2
68,121 - H281DRAFT_05644 0.50 +1.6
68,124 + H281DRAFT_05644 0.50 -1.6
68,124 + H281DRAFT_05644 0.50 +0.3
68,124 + H281DRAFT_05644 0.50 -0.7
68,124 + H281DRAFT_05644 0.50 +0.0
68,124 + H281DRAFT_05644 0.50 +0.7
68,124 + H281DRAFT_05644 0.50 +0.2
68,125 - H281DRAFT_05644 0.50 +0.1
68,125 - H281DRAFT_05644 0.50 -3.5
68,125 - H281DRAFT_05644 0.50 +0.6
68,125 - H281DRAFT_05644 0.50 +0.6
68,157 + H281DRAFT_05644 0.53 -1.5
68,178 - H281DRAFT_05644 0.55 -0.6
68,178 - H281DRAFT_05644 0.55 -0.5
68,195 + H281DRAFT_05644 0.57 +0.6
68,235 + H281DRAFT_05644 0.61 +0.3
68,236 - H281DRAFT_05644 0.61 +1.2
68,274 + H281DRAFT_05644 0.64 +0.6
68,316 + H281DRAFT_05644 0.68 +1.6
68,316 + H281DRAFT_05644 0.68 +0.0
68,316 + H281DRAFT_05644 0.68 -0.4
68,317 - H281DRAFT_05644 0.69 +0.0
68,343 + H281DRAFT_05644 0.71 +0.0
68,343 + H281DRAFT_05644 0.71 +0.3

Or see this region's nucleotide sequence