Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05476

Experiment: 2-Deoxyadenosine 5-monophosphate 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_05475 and H281DRAFT_05476 overlap by 1 nucleotidesH281DRAFT_05476 and H281DRAFT_05477 are separated by 3 nucleotides H281DRAFT_05475: H281DRAFT_05475 - Choline dehydrogenase, at 55,833 to 57,488 _05475 H281DRAFT_05476: H281DRAFT_05476 - Short-chain dehydrogenase, at 57,488 to 58,498 _05476 H281DRAFT_05477: H281DRAFT_05477 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 58,502 to 60,277 _05477 Position (kb) 57 58 59Strain fitness (log2 ratio) -2 -1 0 1at 56.670 kb on + strand, within H281DRAFT_05475at 56.671 kb on - strand, within H281DRAFT_05475at 56.877 kb on + strand, within H281DRAFT_05475at 56.877 kb on + strand, within H281DRAFT_05475at 56.897 kb on - strand, within H281DRAFT_05475at 56.958 kb on + strand, within H281DRAFT_05475at 56.959 kb on - strand, within H281DRAFT_05475at 56.959 kb on - strand, within H281DRAFT_05475at 56.959 kb on - strand, within H281DRAFT_05475at 57.051 kb on + strand, within H281DRAFT_05475at 57.051 kb on + strand, within H281DRAFT_05475at 57.364 kb on + strandat 57.364 kb on + strandat 57.365 kb on - strandat 57.839 kb on + strand, within H281DRAFT_05476at 58.225 kb on - strand, within H281DRAFT_05476at 58.282 kb on + strand, within H281DRAFT_05476at 58.523 kb on + strandat 58.579 kb on - strandat 58.814 kb on - strand, within H281DRAFT_05477at 58.941 kb on + strand, within H281DRAFT_05477at 58.941 kb on + strand, within H281DRAFT_05477at 59.414 kb on + strand, within H281DRAFT_05477at 59.414 kb on + strand, within H281DRAFT_05477at 59.415 kb on - strand, within H281DRAFT_05477

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 5-monophosphate 5 mM (C)
remove
56,670 + H281DRAFT_05475 0.51 +0.4
56,671 - H281DRAFT_05475 0.51 -0.1
56,877 + H281DRAFT_05475 0.63 +0.2
56,877 + H281DRAFT_05475 0.63 +0.4
56,897 - H281DRAFT_05475 0.64 +1.2
56,958 + H281DRAFT_05475 0.68 -0.8
56,959 - H281DRAFT_05475 0.68 +0.7
56,959 - H281DRAFT_05475 0.68 +1.0
56,959 - H281DRAFT_05475 0.68 +0.1
57,051 + H281DRAFT_05475 0.74 -0.6
57,051 + H281DRAFT_05475 0.74 +0.6
57,364 + -0.6
57,364 + +0.0
57,365 - +0.1
57,839 + H281DRAFT_05476 0.35 -0.5
58,225 - H281DRAFT_05476 0.73 -0.6
58,282 + H281DRAFT_05476 0.79 -1.0
58,523 + +0.2
58,579 - +0.7
58,814 - H281DRAFT_05477 0.18 +0.0
58,941 + H281DRAFT_05477 0.25 +1.2
58,941 + H281DRAFT_05477 0.25 +0.8
59,414 + H281DRAFT_05477 0.51 -2.2
59,414 + H281DRAFT_05477 0.51 +1.0
59,415 - H281DRAFT_05477 0.51 +0.6

Or see this region's nucleotide sequence